mRNA_L-digitata_M_contig100327.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100327.1.1
Unique NamemRNA_L-digitata_M_contig100327.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100327.1.1 vs. uniprot
Match: A0A6H5LR46_9PHAE (Sec15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LR46_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.550e-16
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 ALKDFEAKKSSEISRVCHRHYSEFIDSVEDLMKMKVDMISLRDQV 135
            ALK+FEAKK SEISRVCHRHYSEFIDSVEDLMKMK +M+ L+DQV
Sbjct:   70 ALKEFEAKKGSEISRVCHRHYSEFIDSVEDLMKMKAEMVGLKDQV 114
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100327.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LR46_9PHAE1.550e-1684.44Sec15 domain-containing protein n=2 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100327contigL-digitata_M_contig100327:106..261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog192875.XP_004364698.1
Preferred nameEXOC6
PFAMsSec15
Model size156
Max annot lvl33154|Opisthokonta
KEGG koko:K19985
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000131,GO:0000145,GO:0000902,GO:0000904,GO:0001505,GO:0001667,GO:0002064,GO:0002065,GO:0002066,GO:0002262,GO:0002376,GO:0002520,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005628,GO:0005737,GO:0005768,GO:0005829,GO:0005886,GO:0005933,GO:0005934,GO:0005935,GO:0005937,GO:0005938,GO:0006810,GO:0006836,GO:0006886,GO:0006887,GO:0006892,GO:0006893,GO:0006903,GO:0006904,GO:0006928,GO:0006935,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007399,GO:0007409,GO:0007411,GO:0007423,GO:0008104,GO:0008150,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009628,GO:0009653,GO:0009888,GO:0009987,GO:0010631,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016079,GO:0016080,GO:0016081,GO:0016192,GO:0016197,GO:0016477,GO:0017016,GO:0017137,GO:0017156,GO:0019899,GO:0019953,GO:0022008,GO:0022406,GO:0022412,GO:0022414,GO:0022416,GO:0023052,GO:0023061,GO:0030030,GO:0030097,GO:0030099,GO:0030154,GO:0030182,GO:0030218,GO:0030424,GO:0030427,GO:0030707,GO:0030855,GO:0031175,GO:0031267,GO:0031410,GO:0031982,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032940,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033267,GO:0034101,GO:0034613,GO:0040011,GO:0042221,GO:0042330,GO:0042331,GO:0042592,GO:0042763,GO:0042764,GO:0042886,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043332,GO:0043679,GO:0044306,GO:0044424,GO:0044444,GO:0044448,GO:0044456,GO:0044463,GO:0044464,GO:0044703,GO:0045055,GO:0045184,GO:0045202,GO:0046903,GO:0046907,GO:0048193,GO:0048278,GO:0048468,GO:0048477,GO:0048489,GO:0048513,GO:0048534,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0048872,GO:0050896,GO:0051020,GO:0051179,GO:0051234,GO:0051286,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051674,GO:0051704,GO:0055037,GO:0060429,GO:0061564,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090130,GO:0090132,GO:0090522,GO:0097458,GO:0097479,GO:0097480,GO:0097485,GO:0097708,GO:0098793,GO:0098876,GO:0098916,GO:0099003,GO:0099022,GO:0099023,GO:0099504,GO:0099536,GO:0099537,GO:0099568,GO:0099643,GO:0120025,GO:0120036,GO:0120038,GO:0120039,GO:0140029,GO:0140056,GO:0150034,GO:1990778
Exons1
Evalue7.95e-05
EggNOG OGsKOG2176@1|root,KOG2176@2759|Eukaryota,38C01@33154|Opisthokonta
Descriptionvesicle docking involved in exocytosis
Cds size156
COG categoryU
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406606.1137958-CDS-L-digitata_M_contig100327:105..2611682406606.1137958-CDS-L-digitata_M_contig100327:105..261Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100327 106..261 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100327.1.1prot_L-digitata_M_contig100327.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100327 106..261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100327.1.1

>prot_L-digitata_M_contig100327.1.1 ID=prot_L-digitata_M_contig100327.1.1|Name=mRNA_L-digitata_M_contig100327.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=52bp
ALKDFEAKKSSEISRVCHRHYSEFIDSVEDLMKMKVDMISLRDQVRVNGV
SD
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mRNA from alignment at L-digitata_M_contig100327:106..261-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100327.1.1 ID=mRNA_L-digitata_M_contig100327.1.1|Name=mRNA_L-digitata_M_contig100327.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=156bp|location=Sequence derived from alignment at L-digitata_M_contig100327:106..261- (Laminaria digitata LdigPH10_18mv male)
GCGCTGAAAGACTTCGAGGCGAAGAAGAGCAGCGAGATCTCACGCGTGTG
CCACAGGCACTACTCTGAGTTCATAGACAGCGTGGAAGACTTGATGAAGA
TGAAGGTAGACATGATCAGCCTCAGAGATCAGGTGAGAGTGAATGGGGTC
AGTGAT
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Coding sequence (CDS) from alignment at L-digitata_M_contig100327:106..261-

>mRNA_L-digitata_M_contig100327.1.1 ID=mRNA_L-digitata_M_contig100327.1.1|Name=mRNA_L-digitata_M_contig100327.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=156bp|location=Sequence derived from alignment at L-digitata_M_contig100327:106..261- (Laminaria digitata LdigPH10_18mv male)
GCGCTGAAAGACTTCGAGGCGAAGAAGAGCAGCGAGATCTCACGCGTGTG
CCACAGGCACTACTCTGAGTTCATAGACAGCGTGGAAGACTTGATGAAGA
TGAAGGTAGACATGATCAGCCTCAGAGATCAGGTGAGAGTGAATGGGGTC
AGTGAT
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