mRNA_L-digitata_M_contig10032.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig10032.1.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI) HSP 1 Score: 218 bits (554), Expect = 1.310e-62 Identity = 107/162 (66.05%), Postives = 127/162 (78.40%), Query Frame = 1
Query: 16 NPLLRPPETVMDVGVVQAISWWEGIKKSGERTSNKLKMVLVGLAGAGKTTVVRHITGQSPPESS--TVGIEITECRKPDGFGSLEVSIWDFAGQADYYASHQIFLTKGSLFLLVVDLHALFVEAPSVVEKYGDPRGRVYRWLEMLHLRVPGAAVVLVGTHTD 495
NP RPP TV++ G +A+ WWE +K+ GE SNKLKMVLVGLAGAGKTT+VRH+TG+S P+ S TVGIEIT KP L+VS+WDFAGQADYY+SHQ+FLTKG+LFLLVVDLHA E S V+ + DPR R+Y WLEMLH+RVPGAAV LVG+H D
Sbjct: 248 NPWSRPPSTVLESGFERALGWWEDVKRFGEGKSNKLKMVLVGLAGAGKTTIVRHMTGRSVPKRSDRTVGIEITTDWKPGDEVPLQVSVWDFAGQADYYSSHQLFLTKGALFLLVVDLHAFSKEIGSGVDNFTDPRRRIYWWLEMLHMRVPGAAVALVGSHVD 409
BLAST of mRNA_L-digitata_M_contig10032.1.1 vs. uniprot
Match: D8LK68_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK68_ECTSI) HSP 1 Score: 186 bits (473), Expect = 1.250e-51 Identity = 95/165 (57.58%), Postives = 119/165 (72.12%), Query Frame = 1
Query: 1 LNVTENPLLRPPETVMDVGVVQAISWWEGIKKSGERTSNKLKMVLVGLAGAGKTTVVRHITGQSPPESSTVGIEITECRKPDGFGSLEVSIWDFAGQADYYASHQIFLTKGSLFLLVVDLHALFVEAPSVVEKYGDPRGRVYRWLEMLHLRVPGAAVVLVGTHTD 495
++V NP +RPP + G+V A WW+GI + GE TS+KLKMVLVGLA AGKTT+VRH TG P + T+G+E++E KP+ L VS+WDF+GQ+DY+ASHQIFLT+G+LFLLVVDL L + S DPRG +YRWL +LH RVPGA V LVGTH D
Sbjct: 388 VSVNGNPWVRPPRAFLARGLVSAGRWWDGIARFGEGTSSKLKMVLVGLAEAGKTTIVRHFTGGDPADKRTIGVELSEW-KPNKNLPLAVSLWDFSGQSDYHASHQIFLTEGALFLLVVDLFELGRDEKSA--GIPDPRGAIYRWLVILHERVPGAVVALVGTHGD 549
BLAST of mRNA_L-digitata_M_contig10032.1.1 vs. uniprot
Match: A0A6H5K9A9_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9A9_9PHAE) HSP 1 Score: 129 bits (323), Expect = 1.770e-31 Identity = 77/178 (43.26%), Postives = 103/178 (57.87%), Query Frame = 1
Query: 1 LNVTENPLLRPPETVMDVGVVQAISWWEGIKKSGERTSNKLKMVLVGLAGAGKTTVVRHIT----GQSP-PESSTVGIEITECRKPDGFGS--------LEVSIWDFAGQADYYASHQIFLTKGSLFLLVVDLHALFVEAPSVVEKYGDPRGRVYRWLEMLHLRVPGAAVVLVGTHTD 495
++ NP PP VM G+ A + + G SN+LK+VLVGL GAGKT++ + G P PE TVG+EI + G S L+VS+WDFAGQ YY +HQ+FLT+G+LF+LVVD+ A + E S P V +WL++L RVPGA ++LVGTHTD
Sbjct: 21 VDTDNNPWKEPPADVMKRGMAYAAVFLRDLDDYGRAWSNRLKVVLVGLGGAGKTSIATRLEDRLGGCCPNPEERTVGVEIRNIKLGPGATSEGSGPNVELDVSLWDFAGQRAYYDTHQMFLTQGALFVLVVDMFA-YAEGHS-------PEDAVEQWLDILQARVPGAVLLLVGTHTD 190
BLAST of mRNA_L-digitata_M_contig10032.1.1 vs. uniprot
Match: A0A6H5JSN1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN1_9PHAE) HSP 1 Score: 126 bits (317), Expect = 1.130e-30 Identity = 70/174 (40.23%), Postives = 103/174 (59.20%), Query Frame = 1
Query: 16 NPLLRPPETVMDVGVVQAISWWEGIKKSGERTSNKLKMVLVGLAGAGKTTVVRHITGQSPPE------SSTVGIEITECR--------KPDGFGSLEVSIWDFAGQADYYASHQIFLTKGSLFLLVVDLHALFVEAPSVVEKYGDPRGRVYRWLEMLHLRVPGAAVVLVGTHTD 495
NP PP V+ VG+ A S+ + ++ G +SN+LK+VLVGL AGKT+V + G +P + TVG+EI + R + G L+V +WDFAGQ YY +HQ+FLT G+LF+LVVD+ A + S + + +WL++L RVPG+ V+L+GTH+D
Sbjct: 13 NPWTEPPADVLQVGLAYAASFLKDLEDFGRTSSNRLKVVLVGLGNAGKTSVAVRLEGLAPSKPLPSAKERTVGVEIRDIRLGSGPANARSGGNAELDVKLWDFAGQRAYYDTHQMFLTPGALFVLVVDMFAYSEDGHSREDA-------LEQWLDILQARVPGSVVLLMGTHSD 179
BLAST of mRNA_L-digitata_M_contig10032.1.1 vs. uniprot
Match: A0A6H5JPJ1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ1_9PHAE) HSP 1 Score: 123 bits (308), Expect = 1.880e-29 Identity = 73/175 (41.71%), Postives = 104/175 (59.43%), Query Frame = 1
Query: 13 ENPLLRPPETVMDVGVVQAISWWEGIKKSGERTSNKLKMVLVGLAGAGKTTVVRHITG--QSPP----ESSTVGIEITECRK---PDGFGS-----LEVSIWDFAGQADYYASHQIFLTKGSLFLLVVDLHALFVEAPSVVEKYGDPRGRVYRWLEMLHLRVPGAAVVLVGTHTD 495
ENP PP V+++G+ A + + + G +SN+LK+VLVGL AGKT+V + G S P E TVG+EI + + P GS L+V +WDFAGQ YY +HQ+FLT G+LF+LVVD+ A + S + + +WL++L RVPG+ V+LVGTH+D
Sbjct: 184 ENPWTEPPADVLELGMAYAARFLKDLNDFGRTSSNRLKVVLVGLGNAGKTSVAVRLEGLASSKPLPTAEERTVGVEIRDIQLAPGPANGGSRGNAELDVKLWDFAGQRAYYDTHQMFLTPGALFVLVVDIFAYSEDGHSREDA-------LEQWLDILQARVPGSVVLLVGTHSD 351
BLAST of mRNA_L-digitata_M_contig10032.1.1 vs. uniprot
Match: D7FU35_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU35_ECTSI) HSP 1 Score: 122 bits (305), Expect = 4.780e-29 Identity = 75/173 (43.35%), Postives = 101/173 (58.38%), Query Frame = 1
Query: 16 NPLLRPPETVMDVGVVQAISWWEGIKKSGERTSNKLKMVLVGLAGAGKTTVVRHIT---GQS--PPESSTVGIEITECRK---PDGFGS-----LEVSIWDFAGQADYYASHQIFLTKGSLFLLVVDLHALFVEAPSVVEKYGDPRGRVYRWLEMLHLRVPGAAVVLVGTHTD 495
NP PP VM+ G+ A + + G SN+LK+VLVGL AGKT++ + G S PE TVG+EI + + P GS L+VS+WDFAGQ YY +HQ+FLT G+LF+LVVD+ + E S + + +WLE+L RVPG+ V+LVGTHTD
Sbjct: 321 NPWKEPPAEVMNKGMAHAAVFLRDLDDYGRAWSNRLKVVLVGLGEAGKTSIATRLEDRLGSSCPKPEERTVGVEIRDIKLGPGPTNEGSGPNVELDVSLWDFAGQRAYYDTHQMFLTPGALFVLVVDMFT-YTEGQSREDA-------LEQWLEILQARVPGSVVLLVGTHTD 485
BLAST of mRNA_L-digitata_M_contig10032.1.1 vs. uniprot
Match: A0A6H5L2L4_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L4_9PHAE) HSP 1 Score: 121 bits (303), Expect = 8.640e-29 Identity = 70/174 (40.23%), Postives = 98/174 (56.32%), Query Frame = 1
Query: 13 ENPLLRPPETVMDVGVVQAISWWEGIKKSGERTSNKLKMVLVGLAGAGKTTVVRHITGQ-----SPPESSTVGIEITECR-----KPDGFG---SLEVSIWDFAGQADYYASHQIFLTKGSLFLLVVDLHALFVEAPSVVEKYGDPRGRVYRWLEMLHLRVPGAAVVLVGTHTD 495
ENP PP VM+ G+ + + + G N+LK+VLVGL AGKT++ + G+ PE TVG+EI + + +G G L+VS+WDFAGQ YY +HQ+FLT G+LF+LVVD+ V + +WLE+L RVPG+ ++LVGTHTD
Sbjct: 65 ENPWKEPPAKVMEKGMAHTAVFLKDLDDYGRAWYNRLKVVLVGLGEAGKTSIATRLEGRLGSSCPKPEERTVGVEIRDIKLGPGPTNEGIGPNDELDVSLWDFAGQRAYYDTHQMFLTPGALFVLVVDMFTYEVGQSK--------EDALEQWLEILQARVPGSIMLLVGTHTD 230
BLAST of mRNA_L-digitata_M_contig10032.1.1 vs. uniprot
Match: D7FUH6_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH6_ECTSI) HSP 1 Score: 112 bits (280), Expect = 1.090e-25 Identity = 73/162 (45.06%), Postives = 94/162 (58.02%), Query Frame = 1
Query: 28 RPPETVMDVGVVQAISWWEGIKKSGE-RTSNKLKMVLVGLAGAGKTTVVRHITGQS-----PPESSTVGIEITECRKPDGFGSLEVSIWDFAGQADYYASHQIFLTKGSLFLLVVDLHALFVEAPSVVEKYGDPRGRVYRWLEMLHLRVPGAAVVLVGTHTD 495
PP V+ G Q IS++EG+ +SG LK+VLVG AGKTT+ R + PP + V + I P+ ++EV IWDFAG DYY++HQ+FLT GSL +LVVDLH FV PS GD VY WL+ L RVPG+ V++V TH D
Sbjct: 151 NPPWQVIQGGWYQVISFYEGLAQSGGVAVVPSLKVVLVGAVHAGKTTLTRGLLDGKLAKVPPPRTRGVDVHINPWT-PNFDPAVEVVIWDFAGHDDYYSTHQLFLTSGSLHVLVVDLHK-FVCDPSST---GDT---VYVWLDSLLCRVPGSVVLVVATHAD 304
BLAST of mRNA_L-digitata_M_contig10032.1.1 vs. uniprot
Match: A0A6H5L6I0_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6I0_9PHAE) HSP 1 Score: 108 bits (270), Expect = 2.290e-24 Identity = 70/162 (43.21%), Postives = 93/162 (57.41%), Query Frame = 1
Query: 28 RPPETVMDVGVVQAISWWEGIKKSGE-RTSNKLKMVLVGLAGAGKTTVVRHITGQS-----PPESSTVGIEITECRKPDGFGSLEVSIWDFAGQADYYASHQIFLTKGSLFLLVVDLHALFVEAPSVVEKYGDPRGRVYRWLEMLHLRVPGAAVVLVGTHTD 495
+PP V+ G Q IS++EG+ +SG LK+V VG AGKTT+ R + PP + V + + P+ +EV IWDFAG DYY++HQ+FLT GSL +LVVDLH FV PS GD VY WL+ L RVPG+ V++V T+ D
Sbjct: 46 KPPWQVIQGGWYQVISFYEGLAQSGAVAVVPSLKVVFVGAVHAGKTTLTRGLLDGKLAKLPPPRTRGVDVHVNPWT-PNFDPPVEVVIWDFAGHDDYYSTHQLFLTSGSLHVLVVDLHK-FVCDPSST---GDT---VYVWLDSLLCRVPGSVVLVVATYAD 199
BLAST of mRNA_L-digitata_M_contig10032.1.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 2.130e-19 Identity = 63/172 (36.63%), Postives = 93/172 (54.07%), Query Frame = 1
Query: 16 NPLLRPPETVMDVGVVQAISWWEGI---KKSGERTSNK--LKMVLVGLAGAGKTTVVRHI-------TGQSPPESSTVGIEITECRKPDGFGSLEVSIWDFAGQADYYASHQIFLTKGSLFLLVVDLHALFVEAPSVVEKYGDPRGRVYRWLEMLHLRVPGAAVVLVGTHTD 495
NP + PPE V++ G+ + + KK+G ++ LK+VLVG A AGKT+++ I T +P ++STVG+E+ C+ D +V +D AGQ DY HQ FLT+ +L+LLVVD+ + V + + RWL L+LR PG+ VVLV D
Sbjct: 31 NPWIMPPEGVVEAGLTAVKRYLVDVREAKKAGADVTSLQLLKVVLVGSASAGKTSLMHSIIAGRGSPTEGTPAQASTVGMELRPCQLQD----TKVEFFDCAGQVDYAGMHQTFLTRRALYLLVVDI----TKYHGVDDLDKAIHDDIMRWLYYLYLRAPGSTVVLVANKCD 194 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10032.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig10032.1.1 >prot_L-digitata_M_contig10032.1.1 ID=prot_L-digitata_M_contig10032.1.1|Name=mRNA_L-digitata_M_contig10032.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=165bp LNVTENPLLRPPETVMDVGVVQAISWWEGIKKSGERTSNKLKMVLVGLAGback to top mRNA from alignment at L-digitata_M_contig10032:6927..7421+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig10032.1.1 ID=mRNA_L-digitata_M_contig10032.1.1|Name=mRNA_L-digitata_M_contig10032.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=495bp|location=Sequence derived from alignment at L-digitata_M_contig10032:6927..7421+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig10032:6927..7421+ >mRNA_L-digitata_M_contig10032.1.1 ID=mRNA_L-digitata_M_contig10032.1.1|Name=mRNA_L-digitata_M_contig10032.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=495bp|location=Sequence derived from alignment at L-digitata_M_contig10032:6927..7421+ (Laminaria digitata LdigPH10_18mv male)back to top |