mRNA_L-digitata_M_contig10032.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10032.1.1
Unique NamemRNA_L-digitata_M_contig10032.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig10032.1.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 1.310e-62
Identity = 107/162 (66.05%), Postives = 127/162 (78.40%), Query Frame = 1
Query:   16 NPLLRPPETVMDVGVVQAISWWEGIKKSGERTSNKLKMVLVGLAGAGKTTVVRHITGQSPPESS--TVGIEITECRKPDGFGSLEVSIWDFAGQADYYASHQIFLTKGSLFLLVVDLHALFVEAPSVVEKYGDPRGRVYRWLEMLHLRVPGAAVVLVGTHTD 495
            NP  RPP TV++ G  +A+ WWE +K+ GE  SNKLKMVLVGLAGAGKTT+VRH+TG+S P+ S  TVGIEIT   KP     L+VS+WDFAGQADYY+SHQ+FLTKG+LFLLVVDLHA   E  S V+ + DPR R+Y WLEMLH+RVPGAAV LVG+H D
Sbjct:  248 NPWSRPPSTVLESGFERALGWWEDVKRFGEGKSNKLKMVLVGLAGAGKTTIVRHMTGRSVPKRSDRTVGIEITTDWKPGDEVPLQVSVWDFAGQADYYSSHQLFLTKGALFLLVVDLHAFSKEIGSGVDNFTDPRRRIYWWLEMLHMRVPGAAVALVGSHVD 409          
BLAST of mRNA_L-digitata_M_contig10032.1.1 vs. uniprot
Match: D8LK68_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK68_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 1.250e-51
Identity = 95/165 (57.58%), Postives = 119/165 (72.12%), Query Frame = 1
Query:    1 LNVTENPLLRPPETVMDVGVVQAISWWEGIKKSGERTSNKLKMVLVGLAGAGKTTVVRHITGQSPPESSTVGIEITECRKPDGFGSLEVSIWDFAGQADYYASHQIFLTKGSLFLLVVDLHALFVEAPSVVEKYGDPRGRVYRWLEMLHLRVPGAAVVLVGTHTD 495
            ++V  NP +RPP   +  G+V A  WW+GI + GE TS+KLKMVLVGLA AGKTT+VRH TG  P +  T+G+E++E  KP+    L VS+WDF+GQ+DY+ASHQIFLT+G+LFLLVVDL  L  +  S      DPRG +YRWL +LH RVPGA V LVGTH D
Sbjct:  388 VSVNGNPWVRPPRAFLARGLVSAGRWWDGIARFGEGTSSKLKMVLVGLAEAGKTTIVRHFTGGDPADKRTIGVELSEW-KPNKNLPLAVSLWDFSGQSDYHASHQIFLTEGALFLLVVDLFELGRDEKSA--GIPDPRGAIYRWLVILHERVPGAVVALVGTHGD 549          
BLAST of mRNA_L-digitata_M_contig10032.1.1 vs. uniprot
Match: A0A6H5K9A9_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9A9_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.770e-31
Identity = 77/178 (43.26%), Postives = 103/178 (57.87%), Query Frame = 1
Query:    1 LNVTENPLLRPPETVMDVGVVQAISWWEGIKKSGERTSNKLKMVLVGLAGAGKTTVVRHIT----GQSP-PESSTVGIEITECRKPDGFGS--------LEVSIWDFAGQADYYASHQIFLTKGSLFLLVVDLHALFVEAPSVVEKYGDPRGRVYRWLEMLHLRVPGAAVVLVGTHTD 495
            ++   NP   PP  VM  G+  A  +   +   G   SN+LK+VLVGL GAGKT++   +     G  P PE  TVG+EI   +   G  S        L+VS+WDFAGQ  YY +HQ+FLT+G+LF+LVVD+ A + E  S       P   V +WL++L  RVPGA ++LVGTHTD
Sbjct:   21 VDTDNNPWKEPPADVMKRGMAYAAVFLRDLDDYGRAWSNRLKVVLVGLGGAGKTSIATRLEDRLGGCCPNPEERTVGVEIRNIKLGPGATSEGSGPNVELDVSLWDFAGQRAYYDTHQMFLTQGALFVLVVDMFA-YAEGHS-------PEDAVEQWLDILQARVPGAVLLLVGTHTD 190          
BLAST of mRNA_L-digitata_M_contig10032.1.1 vs. uniprot
Match: A0A6H5JSN1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN1_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.130e-30
Identity = 70/174 (40.23%), Postives = 103/174 (59.20%), Query Frame = 1
Query:   16 NPLLRPPETVMDVGVVQAISWWEGIKKSGERTSNKLKMVLVGLAGAGKTTVVRHITGQSPPE------SSTVGIEITECR--------KPDGFGSLEVSIWDFAGQADYYASHQIFLTKGSLFLLVVDLHALFVEAPSVVEKYGDPRGRVYRWLEMLHLRVPGAAVVLVGTHTD 495
            NP   PP  V+ VG+  A S+ + ++  G  +SN+LK+VLVGL  AGKT+V   + G +P +        TVG+EI + R        +  G   L+V +WDFAGQ  YY +HQ+FLT G+LF+LVVD+ A   +  S  +        + +WL++L  RVPG+ V+L+GTH+D
Sbjct:   13 NPWTEPPADVLQVGLAYAASFLKDLEDFGRTSSNRLKVVLVGLGNAGKTSVAVRLEGLAPSKPLPSAKERTVGVEIRDIRLGSGPANARSGGNAELDVKLWDFAGQRAYYDTHQMFLTPGALFVLVVDMFAYSEDGHSREDA-------LEQWLDILQARVPGSVVLLMGTHSD 179          
BLAST of mRNA_L-digitata_M_contig10032.1.1 vs. uniprot
Match: A0A6H5JPJ1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ1_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.880e-29
Identity = 73/175 (41.71%), Postives = 104/175 (59.43%), Query Frame = 1
Query:   13 ENPLLRPPETVMDVGVVQAISWWEGIKKSGERTSNKLKMVLVGLAGAGKTTVVRHITG--QSPP----ESSTVGIEITECRK---PDGFGS-----LEVSIWDFAGQADYYASHQIFLTKGSLFLLVVDLHALFVEAPSVVEKYGDPRGRVYRWLEMLHLRVPGAAVVLVGTHTD 495
            ENP   PP  V+++G+  A  + + +   G  +SN+LK+VLVGL  AGKT+V   + G   S P    E  TVG+EI + +    P   GS     L+V +WDFAGQ  YY +HQ+FLT G+LF+LVVD+ A   +  S  +        + +WL++L  RVPG+ V+LVGTH+D
Sbjct:  184 ENPWTEPPADVLELGMAYAARFLKDLNDFGRTSSNRLKVVLVGLGNAGKTSVAVRLEGLASSKPLPTAEERTVGVEIRDIQLAPGPANGGSRGNAELDVKLWDFAGQRAYYDTHQMFLTPGALFVLVVDIFAYSEDGHSREDA-------LEQWLDILQARVPGSVVLLVGTHSD 351          
BLAST of mRNA_L-digitata_M_contig10032.1.1 vs. uniprot
Match: D7FU35_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU35_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 4.780e-29
Identity = 75/173 (43.35%), Postives = 101/173 (58.38%), Query Frame = 1
Query:   16 NPLLRPPETVMDVGVVQAISWWEGIKKSGERTSNKLKMVLVGLAGAGKTTVVRHIT---GQS--PPESSTVGIEITECRK---PDGFGS-----LEVSIWDFAGQADYYASHQIFLTKGSLFLLVVDLHALFVEAPSVVEKYGDPRGRVYRWLEMLHLRVPGAAVVLVGTHTD 495
            NP   PP  VM+ G+  A  +   +   G   SN+LK+VLVGL  AGKT++   +    G S   PE  TVG+EI + +    P   GS     L+VS+WDFAGQ  YY +HQ+FLT G+LF+LVVD+   + E  S  +        + +WLE+L  RVPG+ V+LVGTHTD
Sbjct:  321 NPWKEPPAEVMNKGMAHAAVFLRDLDDYGRAWSNRLKVVLVGLGEAGKTSIATRLEDRLGSSCPKPEERTVGVEIRDIKLGPGPTNEGSGPNVELDVSLWDFAGQRAYYDTHQMFLTPGALFVLVVDMFT-YTEGQSREDA-------LEQWLEILQARVPGSVVLLVGTHTD 485          
BLAST of mRNA_L-digitata_M_contig10032.1.1 vs. uniprot
Match: A0A6H5L2L4_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L4_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 8.640e-29
Identity = 70/174 (40.23%), Postives = 98/174 (56.32%), Query Frame = 1
Query:   13 ENPLLRPPETVMDVGVVQAISWWEGIKKSGERTSNKLKMVLVGLAGAGKTTVVRHITGQ-----SPPESSTVGIEITECR-----KPDGFG---SLEVSIWDFAGQADYYASHQIFLTKGSLFLLVVDLHALFVEAPSVVEKYGDPRGRVYRWLEMLHLRVPGAAVVLVGTHTD 495
            ENP   PP  VM+ G+     + + +   G    N+LK+VLVGL  AGKT++   + G+       PE  TVG+EI + +       +G G    L+VS+WDFAGQ  YY +HQ+FLT G+LF+LVVD+    V               + +WLE+L  RVPG+ ++LVGTHTD
Sbjct:   65 ENPWKEPPAKVMEKGMAHTAVFLKDLDDYGRAWYNRLKVVLVGLGEAGKTSIATRLEGRLGSSCPKPEERTVGVEIRDIKLGPGPTNEGIGPNDELDVSLWDFAGQRAYYDTHQMFLTPGALFVLVVDMFTYEVGQSK--------EDALEQWLEILQARVPGSIMLLVGTHTD 230          
BLAST of mRNA_L-digitata_M_contig10032.1.1 vs. uniprot
Match: D7FUH6_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH6_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 1.090e-25
Identity = 73/162 (45.06%), Postives = 94/162 (58.02%), Query Frame = 1
Query:   28 RPPETVMDVGVVQAISWWEGIKKSGE-RTSNKLKMVLVGLAGAGKTTVVRHITGQS-----PPESSTVGIEITECRKPDGFGSLEVSIWDFAGQADYYASHQIFLTKGSLFLLVVDLHALFVEAPSVVEKYGDPRGRVYRWLEMLHLRVPGAAVVLVGTHTD 495
             PP  V+  G  Q IS++EG+ +SG       LK+VLVG   AGKTT+ R +         PP +  V + I     P+   ++EV IWDFAG  DYY++HQ+FLT GSL +LVVDLH  FV  PS     GD    VY WL+ L  RVPG+ V++V TH D
Sbjct:  151 NPPWQVIQGGWYQVISFYEGLAQSGGVAVVPSLKVVLVGAVHAGKTTLTRGLLDGKLAKVPPPRTRGVDVHINPWT-PNFDPAVEVVIWDFAGHDDYYSTHQLFLTSGSLHVLVVDLHK-FVCDPSST---GDT---VYVWLDSLLCRVPGSVVLVVATHAD 304          
BLAST of mRNA_L-digitata_M_contig10032.1.1 vs. uniprot
Match: A0A6H5L6I0_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6I0_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.290e-24
Identity = 70/162 (43.21%), Postives = 93/162 (57.41%), Query Frame = 1
Query:   28 RPPETVMDVGVVQAISWWEGIKKSGE-RTSNKLKMVLVGLAGAGKTTVVRHITGQS-----PPESSTVGIEITECRKPDGFGSLEVSIWDFAGQADYYASHQIFLTKGSLFLLVVDLHALFVEAPSVVEKYGDPRGRVYRWLEMLHLRVPGAAVVLVGTHTD 495
            +PP  V+  G  Q IS++EG+ +SG       LK+V VG   AGKTT+ R +         PP +  V + +     P+    +EV IWDFAG  DYY++HQ+FLT GSL +LVVDLH  FV  PS     GD    VY WL+ L  RVPG+ V++V T+ D
Sbjct:   46 KPPWQVIQGGWYQVISFYEGLAQSGAVAVVPSLKVVFVGAVHAGKTTLTRGLLDGKLAKLPPPRTRGVDVHVNPWT-PNFDPPVEVVIWDFAGHDDYYSTHQLFLTSGSLHVLVVDLHK-FVCDPSST---GDT---VYVWLDSLLCRVPGSVVLVVATYAD 199          
BLAST of mRNA_L-digitata_M_contig10032.1.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.130e-19
Identity = 63/172 (36.63%), Postives = 93/172 (54.07%), Query Frame = 1
Query:   16 NPLLRPPETVMDVGVVQAISWWEGI---KKSGERTSNK--LKMVLVGLAGAGKTTVVRHI-------TGQSPPESSTVGIEITECRKPDGFGSLEVSIWDFAGQADYYASHQIFLTKGSLFLLVVDLHALFVEAPSVVEKYGDPRGRVYRWLEMLHLRVPGAAVVLVGTHTD 495
            NP + PPE V++ G+     +   +   KK+G   ++   LK+VLVG A AGKT+++  I       T  +P ++STVG+E+  C+  D     +V  +D AGQ DY   HQ FLT+ +L+LLVVD+     +   V +        + RWL  L+LR PG+ VVLV    D
Sbjct:   31 NPWIMPPEGVVEAGLTAVKRYLVDVREAKKAGADVTSLQLLKVVLVGSASAGKTSLMHSIIAGRGSPTEGTPAQASTVGMELRPCQLQD----TKVEFFDCAGQVDYAGMHQTFLTRRALYLLVVDI----TKYHGVDDLDKAIHDDIMRWLYYLYLRAPGSTVVLVANKCD 194          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10032.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKS5_ECTSI1.310e-6266.05LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D8LK68_ECTSI1.250e-5157.58LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5K9A9_9PHAE1.770e-3143.26Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JSN1_9PHAE1.130e-3040.23Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JPJ1_9PHAE1.880e-2941.71Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FU35_ECTSI4.780e-2943.35LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5L2L4_9PHAE8.640e-2940.23Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FUH6_ECTSI1.090e-2545.06LRR-GTPase of the ROCO family, incomplete sequence... [more]
A0A6H5L6I0_9PHAE2.290e-2443.21Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K8T1_9PHAE2.130e-1936.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10032contigL-digitata_M_contig10032:6927..7421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LK68
PFAMsLRRNT_2,LRR_6,LRR_8,Roc
Model size495
Max annot lvl2759|Eukaryota
KEGG rclassRC00043,RC00070,RC00090,RC00992,RC02896
KEGG koko:K03800,ko:K16666
KEGG ReactionR07770,R07771,R11143
KEGG Pathwayko00785,ko01100,map00785,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.06e-52
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota
EC6.3.1.20
Descriptionregulation of response to stimulus
Cds size495
COG categoryU
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406606.0887337-CDS-L-digitata_M_contig10032:6926..74211682406606.0887337-CDS-L-digitata_M_contig10032:6926..7421Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10032 6927..7421 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10032.1.1prot_L-digitata_M_contig10032.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10032 6927..7421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10032.1.1

>prot_L-digitata_M_contig10032.1.1 ID=prot_L-digitata_M_contig10032.1.1|Name=mRNA_L-digitata_M_contig10032.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=165bp
LNVTENPLLRPPETVMDVGVVQAISWWEGIKKSGERTSNKLKMVLVGLAG
AGKTTVVRHITGQSPPESSTVGIEITECRKPDGFGSLEVSIWDFAGQADY
YASHQIFLTKGSLFLLVVDLHALFVEAPSVVEKYGDPRGRVYRWLEMLHL
RVPGAAVVLVGTHTD
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mRNA from alignment at L-digitata_M_contig10032:6927..7421+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10032.1.1 ID=mRNA_L-digitata_M_contig10032.1.1|Name=mRNA_L-digitata_M_contig10032.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=495bp|location=Sequence derived from alignment at L-digitata_M_contig10032:6927..7421+ (Laminaria digitata LdigPH10_18mv male)
CTGAACGTCACCGAAAACCCATTGCTGCGACCGCCCGAAACCGTCATGGA TGTGGGCGTTGTCCAGGCAATTTCGTGGTGGGAAGGCATCAAGAAGTCTG GTGAGAGAACCTCCAACAAGCTGAAGATGGTACTCGTAGGCCTTGCCGGA GCGGGAAAAACCACCGTGGTACGGCATATCACCGGCCAATCTCCCCCGGA GAGTAGCACGGTGGGCATCGAGATCACCGAATGCAGGAAGCCCGATGGCT TTGGTTCGCTGGAGGTCAGTATATGGGATTTCGCCGGCCAGGCTGACTAC TACGCGTCACATCAGATCTTCCTCACGAAAGGCTCTCTCTTCCTACTGGT GGTGGACCTCCATGCCCTCTTCGTGGAGGCTCCGAGTGTTGTCGAGAAGT ATGGGGATCCGCGTGGTCGCGTGTACCGATGGTTGGAGATGCTGCACCTG CGTGTGCCGGGAGCAGCGGTGGTTCTGGTGGGAACCCACACTGAT
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Coding sequence (CDS) from alignment at L-digitata_M_contig10032:6927..7421+

>mRNA_L-digitata_M_contig10032.1.1 ID=mRNA_L-digitata_M_contig10032.1.1|Name=mRNA_L-digitata_M_contig10032.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=495bp|location=Sequence derived from alignment at L-digitata_M_contig10032:6927..7421+ (Laminaria digitata LdigPH10_18mv male)
CTGAACGTCACCGAAAACCCATTGCTGCGACCGCCCGAAACCGTCATGGA
TGTGGGCGTTGTCCAGGCAATTTCGTGGTGGGAAGGCATCAAGAAGTCTG
GTGAGAGAACCTCCAACAAGCTGAAGATGGTACTCGTAGGCCTTGCCGGA
GCGGGAAAAACCACCGTGGTACGGCATATCACCGGCCAATCTCCCCCGGA
GAGTAGCACGGTGGGCATCGAGATCACCGAATGCAGGAAGCCCGATGGCT
TTGGTTCGCTGGAGGTCAGTATATGGGATTTCGCCGGCCAGGCTGACTAC
TACGCGTCACATCAGATCTTCCTCACGAAAGGCTCTCTCTTCCTACTGGT
GGTGGACCTCCATGCCCTCTTCGTGGAGGCTCCGAGTGTTGTCGAGAAGT
ATGGGGATCCGCGTGGTCGCGTGTACCGATGGTTGGAGATGCTGCACCTG
CGTGTGCCGGGAGCAGCGGTGGTTCTGGTGGGAACCCACACTGAT
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