mRNA_L-digitata_M_contig100301.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100301.1.1
Unique NamemRNA_L-digitata_M_contig100301.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100301.1.1 vs. uniprot
Match: A0A7X7QG36_9BACT (MMPL family transporter n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7X7QG36_9BACT)

HSP 1 Score: 67.4 bits (163), Expect = 2.710e-10
Identity = 41/107 (38.32%), Postives = 55/107 (51.40%), Query Frame = 1 
Query:  109 LVAATLGISTSRTALVSEDSPYWKRYMDFA*EFGIPEDLVVVVRADEPEQVRAFTDAVAKRLAGQPEQVKAVFHRVDLSIFEERAPLFLDDSVLEILDALSDTRAVA 429
            L A  LG  TSR  L+S DS + +R++D+  EFG  ED+VVVV  D  EQ+    D V   L        AV H+++     E+   +LD   L  +D L   RAVA
Sbjct:   46 LTATQLGFRTSRAELLSPDSEFNRRWLDYTAEFGDKEDVVVVVEGDSREQITPVLDDVYHSLKKSGGMFAAVMHKIEAPRLREKGLYYLDTEELRQIDGL--LRAVA 150
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BLAST of mRNA_L-digitata_M_contig100301.1.1 vs. uniprot
Match: A0A3M1TUW7_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1TUW7_9DELT)

HSP 1 Score: 64.3 bits (155), Expect = 3.240e-9
Identity = 46/114 (40.35%), Postives = 68/114 (59.65%), Query Frame = 1 
Query:   37 IAGICTRHPRRVLWAAILITLPALLVAATLGISTSRTALVSEDSPYWKRYMDFA*E-FGIPEDLVVVVRADEP-EQVRAFTDAVAKRLAGQPEQVKAVFHRVDLSIFEERAPLF 372
            +A + T HPRRVL AA+L+TL +  +AA L +  S    + ED+P  +R +++A E FG  + L VV+R  +  E++ A  D  A+ L+     V  VFH VDLS F +RA L+
Sbjct:   10 LARLTTHHPRRVLAAAVLLTLASAYLAAGLQLELSIGKQLPEDAPE-RRLLEYANENFGGMDLLFVVIRGTKDRERLAAAADRAAEALSKIEGYVAQVFHSVDLSFFRDRALLY 122
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BLAST of mRNA_L-digitata_M_contig100301.1.1 vs. uniprot
Match: UPI00195014C0 (MMPL family transporter n=1 Tax=Archangium violaceum TaxID=83451 RepID=UPI00195014C0)

HSP 1 Score: 52.8 bits (125), Expect = 3.330e-5
Identity = 40/114 (35.09%), Postives = 60/114 (52.63%), Query Frame = 1 
Query:   58 HPRRVLWAAILITLPALLVAATLGISTSRTALVSEDSPYWKRYMDFA*EFGIPEDLVVVVRADEPEQVRAFTDAVAKRLAGQPEQVKAVFHRVDLSIFEERAPLFLDDSVLEIL 399
             P RV+ A  L+ L   L+A  L    S   L+ +++P  +     A + G    LVV  +  +PE +RAF+DA+AK+L   PE V+ V H  D++ F+ER  L L    L+ L
Sbjct:   20 RPWRVVLAFTLLALGGALLAGRLEFRGSFVELLPKEAPEVQDLTRVAQKAGGDGYLVVRAQGVKPEALRAFSDALAKKLETLPE-VRYVEHHFDVAFFQERGLLLLPTEKLQAL 132
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BLAST of mRNA_L-digitata_M_contig100301.1.1 vs. uniprot
Match: E3I641_RHOVT (Hopanoid biosynthesis associated RND transporter like protein HpnN n=5 Tax=Rhodomicrobium TaxID=1068 RepID=E3I641_RHOVT)

HSP 1 Score: 51.6 bits (122), Expect = 8.440e-5
Identity = 45/133 (33.83%), Postives = 66/133 (49.62%), Query Frame = 1 
Query:   34 KIAGICTRHPRRVLWAAILITL-PALLVAATLGISTSRTALVSEDSPYWKRYMDFA*EFGIPEDLVV-VVRADEPEQVRAFTDAVAKRLAGQPEQVKAVFHRVDLSIFEERAPLFLDDSVLEILDALSD-TRA 423
            K   IC+RHP RVL AA+++T+      AA   I+T  + L+S + P+ +R + FA  F   E  +V VV    PE        +A RL  +   + +V        F++   LFL +S  E+ DAL   TRA
Sbjct:    8 KTVDICSRHPWRVLAAALVLTIISGYYFAAHFAINTDISKLISTELPWRQREVAFAKAFPKVESAIVAVVDGPTPELADQAAQRLAHRLLEEKTLISSVQQLTGGPFFQKNGFLFLSES--ELKDALGQLTRA 138
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100301.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7X7QG36_9BACT2.710e-1038.32MMPL family transporter n=1 Tax=Pirellulaceae bact... [more]
A0A3M1TUW7_9DELT3.240e-940.35Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
UPI00195014C03.330e-535.09MMPL family transporter n=1 Tax=Archangium violace... [more]
E3I641_RHOVT8.440e-533.83Hopanoid biosynthesis associated RND transporter l... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100301contigL-digitata_M_contig100301:199..630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size432
Hectar predicted targeting categorysignal peptide
Exons1
Cds size186
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406605.8206053-UTR-L-digitata_M_contig100301:198..2131682406605.8206053-UTR-L-digitata_M_contig100301:198..213Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig100301 199..213 +
1682406605.8482811-UTR-L-digitata_M_contig100301:399..6301682406605.8482811-UTR-L-digitata_M_contig100301:399..630Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig100301 400..630 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406605.8323493-CDS-L-digitata_M_contig100301:213..3991682406605.8323493-CDS-L-digitata_M_contig100301:213..399Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100301 214..399 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100301.1.1prot_L-digitata_M_contig100301.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100301 214..399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100301.1.1

>prot_L-digitata_M_contig100301.1.1 ID=prot_L-digitata_M_contig100301.1.1|Name=mRNA_L-digitata_M_contig100301.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=62bp
MAALLPKIAGICTRHPRRVLWAAILITLPALLVAATLGISTSRTALVSED
SPYWKRYMDFA*
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mRNA from alignment at L-digitata_M_contig100301:199..630+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100301.1.1 ID=mRNA_L-digitata_M_contig100301.1.1|Name=mRNA_L-digitata_M_contig100301.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=432bp|location=Sequence derived from alignment at L-digitata_M_contig100301:199..630+ (Laminaria digitata LdigPH10_18mv male)
GGTGCACTCGCCCAAATGGCGGCCCTATTGCCCAAGATAGCGGGGATCTG
CACCCGTCATCCTCGCCGAGTCCTATGGGCTGCGATCCTCATCACGCTGC
CCGCGTTGCTCGTCGCGGCCACGCTGGGCATCTCCACGTCGCGCACCGCG
CTGGTGAGCGAGGACAGCCCCTATTGGAAGCGCTACATGGACTTCGCCTG
AGAGTTCGGGATCCCCGAAGATCTTGTGGTGGTGGTCCGGGCCGACGAGC
CCGAGCAGGTCCGTGCCTTCACGGACGCCGTCGCGAAGCGCCTCGCCGGC
CAGCCGGAGCAGGTCAAGGCGGTCTTTCATCGCGTGGACCTGTCGATCTT
TGAGGAGCGCGCGCCGCTCTTCCTGGATGACTCCGTGCTCGAGATCCTCG
ACGCCCTATCTGATACCCGCGCCGTGGCTCAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100301:199..630+

>mRNA_L-digitata_M_contig100301.1.1 ID=mRNA_L-digitata_M_contig100301.1.1|Name=mRNA_L-digitata_M_contig100301.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=186bp|location=Sequence derived from alignment at L-digitata_M_contig100301:199..630+ (Laminaria digitata LdigPH10_18mv male)
ATGGCGGCCCTATTGCCCAAGATAGCGGGGATCTGCACCCGTCATCCTCG
CCGAGTCCTATGGGCTGCGATCCTCATCACGCTGCCCGCGTTGCTCGTCG
CGGCCACGCTGGGCATCTCCACGTCGCGCACCGCGCTGGTGAGCGAGGAC
AGCCCCTATTGGAAGCGCTACATGGACTTCGCCTGA
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