mRNA_L-digitata_M_contig100295.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig100295.1.1 vs. uniprot
Match: A0A520NMX0_9PROT (SDR family oxidoreductase n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NMX0_9PROT) HSP 1 Score: 400 bits (1029), Expect = 4.610e-139 Identity = 194/246 (78.86%), Postives = 213/246 (86.59%), Query Frame = 1
Query: 1 LDQAVAEIDGECIAAPGDVSSPDDAKRIVDDALAAFGRLDILVNNAGLGPERFRDTDRSNAKMIWEIDLADWRLYLDVNTTGHFVMTQAVMPHLLGQDWGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVDGTGVTCNVLIPGGPADTRMISATGVYENRDKLIRPDVMVPPLLHLVSDDGGAINNRRFRAALWDTHLDPAENLANCGDPIAWPQLGGKTIRPDNDPRGTKNTGVEND 738
LD+AV +I CI DVSSPD A+RIV++ L+AFG L ILVNNAGLGPERFRDTDRSNAKMIWEID DW+L+LDVNTTGHFVMT+A MPHLL QDWGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVDGTGVTCNVLIPGGPADTRMISA+G+Y NRD+LI+PDVMVPPLL L+S+ +NNRRFRAALWD D N+A CGDPIAWPQLGG+ IRPD DPRG+ NTG END
Sbjct: 43 LDEAVKKIGDGCIGIAADVSSPDKAQRIVNETLSAFGGLHILVNNAGLGPERFRDTDRSNAKMIWEIDFTDWQLFLDVNTTGHFVMTKAAMPHLLAQDWGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVDGTGVTCNVLIPGGPADTRMISASGIYANRDRLIQPDVMVPPLLQLLSEGASKVNNRRFRAALWDLEADADSNMAACGDPIAWPQLGGQAIRPDGDPRGSGNTGSEND 288
BLAST of mRNA_L-digitata_M_contig100295.1.1 vs. uniprot
Match: A0A2S6Q5E6_9PROT (3-oxoacyl-[acyl-carrier-protein] reductase 1 n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6Q5E6_9PROT) HSP 1 Score: 396 bits (1018), Expect = 2.180e-137 Identity = 191/245 (77.96%), Postives = 212/245 (86.53%), Query Frame = 1
Query: 1 LDQAVAEIDGECIAAPGDVSSPDDAKRIVDDALAAFGRLDILVNNAGLGPERFRDTDRSNAKMIWEIDLADWRLYLDVNTTGHFVMTQAVMPHLLGQDWGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVDGTGVTCNVLIPGGPADTRMISATGVYENRDKLIRPDVMVPPLLHLVSDDGGAINNRRFRAALWDTHLDPAENLANCGDPIAWPQLGGKTIRPDNDPRGTKNTGVEN 735
L+ A+ EI CI DVS +DAKRIVD L AFG L IL+NNAGLGPERFRDTDRSNAKMIWEID +DW+L+LDVNTTGHFVMT+AV+PHLL QDWGRI+NVTTSLDTMTN+TNGAYGPSKAGAEALATMIAGGV+GTGVTCNVLIPGGPADTRMISATGVY NR+ LI+PDVMVPPLL+L+SD+G +NNRRFRAALWD D NL NCGDPIAWPQLGG+ IRPD DPRG +N+G EN
Sbjct: 43 LENAIGEIGDACIGVAADVSKQNDAKRIVDATLEAFGGLHILLNNAGLGPERFRDTDRSNAKMIWEIDFSDWQLFLDVNTTGHFVMTKAVIPHLLLQDWGRIINVTTSLDTMTNFTNGAYGPSKAGAEALATMIAGGVEGTGVTCNVLIPGGPADTRMISATGVYANREMLIQPDVMVPPLLYLLSDEGAVVNNRRFRAALWDVGADGKSNLDNCGDPIAWPQLGGQAIRPDGDPRGNRNSGSEN 287
BLAST of mRNA_L-digitata_M_contig100295.1.1 vs. uniprot
Match: A0A2D8G7M2_9PROT (Short-chain dehydrogenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G7M2_9PROT) HSP 1 Score: 390 bits (1001), Expect = 1.000e-134 Identity = 189/244 (77.46%), Postives = 209/244 (85.66%), Query Frame = 1
Query: 1 LDQAVAEIDGECIAAPGDVSSPDDAKRIVDDALAAFGRLDILVNNAGLGPERFRDTDRSNAKMIWEIDLADWRLYLDVNTTGHFVMTQAVMPHLLGQDWGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVDGTGVTCNVLIPGGPADTRMISATGVYENRDKLIRPDVMVPPLLHLVSDDGGAINNRRFRAALWDTHLDPAENLANCGDPIAWPQLGGKTIRPDNDPRGTKNTGVE 732
LD AV I CI GDVS P++A+ IVD+ +AFG L ILVNNAGLGPERFRDTDRSNAKMIWEID DW+L+LDVNTTGHFVMT+AVMP LL Q WGRI+NVTTSLDTMTN+TNGAYGPSKAGAEALATMIAGGV+GTG+TCNVLIPGGPADTRMISATGVY +RDKLI+P+VMVPPLLHL+S+DG ++NNRRFRAALWD LD NL GDPIAWPQLGGK IRP DPRG +NTG E
Sbjct: 48 LDXAVKSIGKGCIGIAGDVSRPEEARMIVDETNSAFGXLHILVNNAGLGPERFRDTDRSNAKMIWEIDXTDWQLFLDVNTTGHFVMTKAVMPKLLSQXWGRIINVTTSLDTMTNFTNGAYGPSKAGAEALATMIAGGVEGTGITCNVLIPGGPADTRMISATGVYADRDKLIQPEVMVPPLLHLLSEDGSSVNNRRFRAALWDPELDANTNLKKSGDPIAWPQLGGKAIRPQGDPRGNRNTGSE 291
BLAST of mRNA_L-digitata_M_contig100295.1.1 vs. uniprot
Match: A0A2D8PQR5_9PROT (Short-chain dehydrogenase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PQR5_9PROT) HSP 1 Score: 388 bits (996), Expect = 4.860e-134 Identity = 189/245 (77.14%), Postives = 210/245 (85.71%), Query Frame = 1
Query: 1 LDQAVAEIDGECIAAPGDVSSPDDAKRIVDDALAAFGRLDILVNNAGLGPERFRDTDRSNAKMIWEIDLADWRLYLDVNTTGHFVMTQAVMPHLLGQDWGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVDGTGVTCNVLIPGGPADTRMISATGVYENRDKLIRPDVMVPPLLHLVSDDGGAINNRRFRAALWDTHLDPAENLANCGDPIAWPQLGGKTIRPDNDPRGTKNTGVEN 735
LD+AVAEI G+C+ DVS P + RIV++ FG + ILVNNAGLGP+RFR+TDRSNAKMIWEID +DW+L+LDVNTTGHFVMTQAVMPH+L Q WGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGV+GTGVTCNVLIPGGPADTRMISA+GVY NRD LI+PDVM PPLLHLVS++GGA+NNRRFRAALWD D A N+ GDPIAWPQLGG+ IRP DPRG NTG EN
Sbjct: 43 LDEAVAEIGGDCVGIAADVSKPVEGLRIVEETRKVFGGIHILVNNAGLGPQRFRNTDRSNAKMIWEIDFSDWQLFLDVNTTGHFVMTQAVMPHMLEQGWGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVEGTGVTCNVLIPGGPADTRMISASGVYANRDLLIQPDVMNPPLLHLVSEEGGAVNNRRFRAALWDPANDAAVNMEASGDPIAWPQLGGQAIRPKGDPRGNVNTGREN 287
BLAST of mRNA_L-digitata_M_contig100295.1.1 vs. uniprot
Match: A0A2W1AXW3_9CHLR (3-oxoacyl-[acyl-carrier protein] reductase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W1AXW3_9CHLR) HSP 1 Score: 197 bits (500), Expect = 5.850e-59 Identity = 101/214 (47.20%), Postives = 130/214 (60.75%), Query Frame = 1
Query: 52 DVSSPDDAKRIVDDALAAFGRLDILVNNAGLGPERFRDTDRSNAKMIWEIDLADWRLYLDVNTTGHFVMTQAVMPHLLGQDWGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVDGTGVTCNVLIPGGPADTRMISATGVYENRDKLIRPDVMVPPLLHLVSDDGGAINNRRFRAALWDTHLDPAENLANCGDPIAWPQLGGKTIRP 693
D++ + A+R+V D +A FG L I+VNNAG+GPE R N WE+D++ WR + VN T F+M A + H+ Q WGRI+NVTTSLDTM YGP KA EA ++A ++GTGVT NVLIPGGP +TRM G + R++LI+PDVM P++ L SD RRF A WD + P E A +P AWPQLGG I P
Sbjct: 62 DLTKEETAERLVADTIAQFGGLHIVVNNAGIGPETIRADHFINPVKFWEMDISHWRRGIAVNGTAQFLMALASVKHMTAQGWGRIINVTTSLDTMLRPGFSIYGPGKAANEAFVAIMAQELEGTGVTANVLIPGGPVNTRMFPPIGNIK-REELIQPDVMAVPIVWLASDASAGWTGRRFIAGFWDATIPPEEAAAKASNPAAWPQLGGNAIMP 274
BLAST of mRNA_L-digitata_M_contig100295.1.1 vs. uniprot
Match: A0A2D8PQR3_9PROT (Short-chain dehydrogenase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PQR3_9PROT) HSP 1 Score: 194 bits (493), Expect = 8.620e-58 Identity = 105/215 (48.84%), Postives = 133/215 (61.86%), Query Frame = 1
Query: 52 DVSSPDDAKRIVDDALAAFGRLDILVNNAGLGPERFRDTDRSNAKMIWEIDLADWRLYLDVNTTGHFVMTQAVMPHLLGQDWGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVDGTGVTCNVLIPGGPADTRMI-SATGVYENRDKLIRPDVMVPPLLHLVSDDGGAINNRRFRAALWDTHLDPAENLANCGDPIAWPQLGGKTIRP 693
DV+ D A+ + + FG DIL+N+A +GP+ F D ++ WE+D+ W L VN G +M+ PHLL + WGRI+NVTTSLDTM GAYGPSKA EA ++A +DGTGVT NVLIPGGPA+TRMI ATG +R++L++P M P+ L S D INN RF AALWD L P E +A G PIAW Q+G RP
Sbjct: 67 DVTDRDRAEAAIQTTIDTFGGFDILINDAAMGPQFFTDNFTADTPKFWEVDIDLWHRVLTVNAHGPQLMSTVSAPHLLDRGWGRIINVTTSLDTMYLKGCGAYGPSKAALEANTRIMAQDLDGTGVTANVLIPGGPANTRMIPEATGF--DREELVQPGAMQAPICWLCSTDADDINNMRFIAALWDETLPPQERIAAAGAPIAWAQIGSIAKRP 279
BLAST of mRNA_L-digitata_M_contig100295.1.1 vs. uniprot
Match: A0A520NMV9_9PROT (SDR family oxidoreductase n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NMV9_9PROT) HSP 1 Score: 192 bits (488), Expect = 4.870e-57 Identity = 106/236 (44.92%), Postives = 143/236 (60.59%), Query Frame = 1
Query: 1 LDQAVAEID-----GECIAAPGDVSSPDDAKRIVDDALAAFGRLDILVNNAGLGPERFRDTDRSNAKMIWEIDLADWRLYLDVNTTGHFVMTQAVMPHLLGQDWGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVDGTGVTCNVLIPGGPADTRMISATGVYENRDKLIRPDVMVPPLLHLVSDDGGAINNRRFRAALWDTHLDPAENLANCGDPIAWPQLGGKTIRP 693
L AVA+++ G +A P DV+ + ++ ++D + AFG DIL+N+A +GP+ F D ++ WE D+ W L VN G +M PHL+ + WGRI+NVTTSLDTM GAYGPSKA EA ++A +DGTGVT NVLIPGGPA+TRMI ++ RD+L++P+VM P+ L S D I+N RF AA+WD L E +A G P AW Q+G RP
Sbjct: 45 LAAAVADVETAGGQGCALAIPADVTDTEKSQVVIDCTIDAFGGFDILINDAAMGPQFFTDNFVAHTPKFWEHDVDLWHRVLTVNAYGPQLMATVAAPHLVDRGWGRIINVTTSLDTMYLRGCGAYGPSKAALEANTRIMAQDLDGTGVTANVLIPGGPANTRMIPEAMGFD-RDELVQPEVMQAPMNWLCSTDADDISNMRFIAAMWDESLPREERIAAAGAPTAWAQIGSVAKRP 279
BLAST of mRNA_L-digitata_M_contig100295.1.1 vs. uniprot
Match: A0A1Z9IWD8_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TMED167 TaxID=1986863 RepID=A0A1Z9IWD8_9PROT) HSP 1 Score: 190 bits (483), Expect = 3.080e-56 Identity = 97/207 (46.86%), Postives = 131/207 (63.29%), Query Frame = 1
Query: 52 DVSSPDDAKRIVDDALAAFGRLDILVNNAGLGPERFRDTDRSNAKMIWEIDLADWRLYLDVNTTGHFVMTQAVMPHLLGQDWGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVDGTGVTCNVLIPGGPADTRMISATGVYENRDKLIRPDVMVPPLLHLVSDDGGAINNRRFRAALWDTHLDPAENLANCGDPIAWPQL 672
D+S DD K VD + FG +D LVNNAGLG R N IW++D A+WR ++VNT G F+MT+ +PH++ + GR++NVTT+ TM GAYGPSKAG E++ +++ ++ TGVT NV++PGGPADT I G+ ++R L+RPDVMVPP+ L SD +N RF AA WD L P E +A PIAW +L
Sbjct: 67 DISDEDDTKSFVDQVCSTFGHIDGLVNNAGLGCAAVRPDFLVNPIPIWKLDPAEWRRVVEVNTIGTFLMTRWAVPHMVARGSGRLLNVTTTFQTMLAPAFGAYGPSKAGIESMTSILVDELEDTGVTVNVVVPGGPADTEQIPE-GMVKDRGDLLRPDVMVPPIRWLCSDAASKVNGLRFSAAEWDDELPPEEAIAQSTKPIAWREL 272
BLAST of mRNA_L-digitata_M_contig100295.1.1 vs. uniprot
Match: A0A2W1B1X1_9CHLR (3-oxoacyl-[acyl-carrier protein] reductase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W1B1X1_9CHLR) HSP 1 Score: 188 bits (478), Expect = 4.250e-56 Identity = 100/214 (46.73%), Postives = 130/214 (60.75%), Query Frame = 1
Query: 52 DVSSPDDAKRIVDDALAAFGRLDILVNNAGLGPERFRDTDRSNAKMIWEIDLADWRLYLDVNTTGHFVMTQAVMPHLLGQDWGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVDGTGVTCNVLIPGGPADTRMISATGVYENRDKLIRPDVMVPPLLHLVSDDGGAINNRRFRAALWDTHLDPAENLANCGDPIAWPQLGGKTIRP 693
DV+SP+DA+R+V L+ FG L +L+NNAG + + W + A W + VN +G F MT+A MPHLL Q WGRI+ VTTSLDTM + YGPSKAG EAL +A ++GTGVT NVL+PGGP +T ++ ++ R KLI+PDVM+ P++ L S+ IN RRF A WD L AE + P AWPQL K I P
Sbjct: 31 DVTSPEDAERVVATTLSEFGGLHVLINNAGTNQLNV-GASSTTFEPFWTVTPAGWARVVAVNFSGPFYMTRAAMPHLLEQKWGRIIGVTTSLDTMIRVSMSPYGPSKAGHEALVATMAQDMEGTGVTANVLVPGGPVNTNLLPPDTHFD-RQKLIQPDVMMIPVIWLASEQSDGINGRRFIAYEWDESLPLAERMEKASAPAAWPQLESKAIYP 242
BLAST of mRNA_L-digitata_M_contig100295.1.1 vs. uniprot
Match: A0A225MLB1_9BURK (Short-chain dehydrogenase n=1 Tax=Candidimonas nitroreducens TaxID=683354 RepID=A0A225MLB1_9BURK) HSP 1 Score: 187 bits (476), Expect = 3.010e-55 Identity = 100/231 (43.29%), Postives = 130/231 (56.28%), Query Frame = 1
Query: 1 LDQAVAEIDGECIAAPGDVSSPDDAKRIVDDALAAFGRLDILVNNAGLGPERFRDTDRSNAKMIWEIDLADWRLYLDVNTTGHFVMTQAVMPHLLGQDWGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVDGTGVTCNVLIPGGPADTRMISATGVYENRDKLIRPDVMVPPLLHLVSDDGGAINNRRFRAALWDTHLDPAENLANCGDPIAWPQLGGKTIRP 693
L QA+ + +A PGD+ D +VD A+A FG + +VNNAG G R WE+D A W+ +D+NT F+M +AV PHL+ Q WGRIVNVTTSLDTM YGPSKA EA + + GVTCN L+PGG +T A + R LI+PD M+PP+ L+S+DGGA RF A LWD L P+E CG P AW +G +++ P
Sbjct: 51 LAQAITAAGDKALAVPGDICDIDVCHSVVDRAIAHFGAVHGVVNNAGRGMTAIRADYLDRPVPFWEVDPALWQSLMDLNTKAPFLMARAVAPHLVAQKWGRIVNVTTSLDTMYRAAYTPYGPSKAWLEAATVGWSRDLASHGVTCNALLPGGAVNTAFFDAHAPLD-RSTLIQPDAMIPPICWLLSEDGGATTGYRFVARLWDASLPPSEAAMKCGSPAAWQSMGAQSLWP 280 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100295.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig100295.1.1 >prot_L-digitata_M_contig100295.1.1 ID=prot_L-digitata_M_contig100295.1.1|Name=mRNA_L-digitata_M_contig100295.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=247bp LDQAVAEIDGECIAAPGDVSSPDDAKRIVDDALAAFGRLDILVNNAGLGPback to top mRNA from alignment at L-digitata_M_contig100295:1..741+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig100295.1.1 ID=mRNA_L-digitata_M_contig100295.1.1|Name=mRNA_L-digitata_M_contig100295.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=741bp|location=Sequence derived from alignment at L-digitata_M_contig100295:1..741+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig100295:1..741+ >mRNA_L-digitata_M_contig100295.1.1 ID=mRNA_L-digitata_M_contig100295.1.1|Name=mRNA_L-digitata_M_contig100295.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=741bp|location=Sequence derived from alignment at L-digitata_M_contig100295:1..741+ (Laminaria digitata LdigPH10_18mv male)back to top |