mRNA_L-digitata_M_contig100295.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100295.1.1
Unique NamemRNA_L-digitata_M_contig100295.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100295.1.1 vs. uniprot
Match: A0A520NMX0_9PROT (SDR family oxidoreductase n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NMX0_9PROT)

HSP 1 Score: 400 bits (1029), Expect = 4.610e-139
Identity = 194/246 (78.86%), Postives = 213/246 (86.59%), Query Frame = 1
Query:    1 LDQAVAEIDGECIAAPGDVSSPDDAKRIVDDALAAFGRLDILVNNAGLGPERFRDTDRSNAKMIWEIDLADWRLYLDVNTTGHFVMTQAVMPHLLGQDWGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVDGTGVTCNVLIPGGPADTRMISATGVYENRDKLIRPDVMVPPLLHLVSDDGGAINNRRFRAALWDTHLDPAENLANCGDPIAWPQLGGKTIRPDNDPRGTKNTGVEND 738
            LD+AV +I   CI    DVSSPD A+RIV++ L+AFG L ILVNNAGLGPERFRDTDRSNAKMIWEID  DW+L+LDVNTTGHFVMT+A MPHLL QDWGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVDGTGVTCNVLIPGGPADTRMISA+G+Y NRD+LI+PDVMVPPLL L+S+    +NNRRFRAALWD   D   N+A CGDPIAWPQLGG+ IRPD DPRG+ NTG END
Sbjct:   43 LDEAVKKIGDGCIGIAADVSSPDKAQRIVNETLSAFGGLHILVNNAGLGPERFRDTDRSNAKMIWEIDFTDWQLFLDVNTTGHFVMTKAAMPHLLAQDWGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVDGTGVTCNVLIPGGPADTRMISASGIYANRDRLIQPDVMVPPLLQLLSEGASKVNNRRFRAALWDLEADADSNMAACGDPIAWPQLGGQAIRPDGDPRGSGNTGSEND 288          
BLAST of mRNA_L-digitata_M_contig100295.1.1 vs. uniprot
Match: A0A2S6Q5E6_9PROT (3-oxoacyl-[acyl-carrier-protein] reductase 1 n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6Q5E6_9PROT)

HSP 1 Score: 396 bits (1018), Expect = 2.180e-137
Identity = 191/245 (77.96%), Postives = 212/245 (86.53%), Query Frame = 1
Query:    1 LDQAVAEIDGECIAAPGDVSSPDDAKRIVDDALAAFGRLDILVNNAGLGPERFRDTDRSNAKMIWEIDLADWRLYLDVNTTGHFVMTQAVMPHLLGQDWGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVDGTGVTCNVLIPGGPADTRMISATGVYENRDKLIRPDVMVPPLLHLVSDDGGAINNRRFRAALWDTHLDPAENLANCGDPIAWPQLGGKTIRPDNDPRGTKNTGVEN 735
            L+ A+ EI   CI    DVS  +DAKRIVD  L AFG L IL+NNAGLGPERFRDTDRSNAKMIWEID +DW+L+LDVNTTGHFVMT+AV+PHLL QDWGRI+NVTTSLDTMTN+TNGAYGPSKAGAEALATMIAGGV+GTGVTCNVLIPGGPADTRMISATGVY NR+ LI+PDVMVPPLL+L+SD+G  +NNRRFRAALWD   D   NL NCGDPIAWPQLGG+ IRPD DPRG +N+G EN
Sbjct:   43 LENAIGEIGDACIGVAADVSKQNDAKRIVDATLEAFGGLHILLNNAGLGPERFRDTDRSNAKMIWEIDFSDWQLFLDVNTTGHFVMTKAVIPHLLLQDWGRIINVTTSLDTMTNFTNGAYGPSKAGAEALATMIAGGVEGTGVTCNVLIPGGPADTRMISATGVYANREMLIQPDVMVPPLLYLLSDEGAVVNNRRFRAALWDVGADGKSNLDNCGDPIAWPQLGGQAIRPDGDPRGNRNSGSEN 287          
BLAST of mRNA_L-digitata_M_contig100295.1.1 vs. uniprot
Match: A0A2D8G7M2_9PROT (Short-chain dehydrogenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G7M2_9PROT)

HSP 1 Score: 390 bits (1001), Expect = 1.000e-134
Identity = 189/244 (77.46%), Postives = 209/244 (85.66%), Query Frame = 1
Query:    1 LDQAVAEIDGECIAAPGDVSSPDDAKRIVDDALAAFGRLDILVNNAGLGPERFRDTDRSNAKMIWEIDLADWRLYLDVNTTGHFVMTQAVMPHLLGQDWGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVDGTGVTCNVLIPGGPADTRMISATGVYENRDKLIRPDVMVPPLLHLVSDDGGAINNRRFRAALWDTHLDPAENLANCGDPIAWPQLGGKTIRPDNDPRGTKNTGVE 732
            LD AV  I   CI   GDVS P++A+ IVD+  +AFG L ILVNNAGLGPERFRDTDRSNAKMIWEID  DW+L+LDVNTTGHFVMT+AVMP LL Q WGRI+NVTTSLDTMTN+TNGAYGPSKAGAEALATMIAGGV+GTG+TCNVLIPGGPADTRMISATGVY +RDKLI+P+VMVPPLLHL+S+DG ++NNRRFRAALWD  LD   NL   GDPIAWPQLGGK IRP  DPRG +NTG E
Sbjct:   48 LDXAVKSIGKGCIGIAGDVSRPEEARMIVDETNSAFGXLHILVNNAGLGPERFRDTDRSNAKMIWEIDXTDWQLFLDVNTTGHFVMTKAVMPKLLSQXWGRIINVTTSLDTMTNFTNGAYGPSKAGAEALATMIAGGVEGTGITCNVLIPGGPADTRMISATGVYADRDKLIQPEVMVPPLLHLLSEDGSSVNNRRFRAALWDPELDANTNLKKSGDPIAWPQLGGKAIRPQGDPRGNRNTGSE 291          
BLAST of mRNA_L-digitata_M_contig100295.1.1 vs. uniprot
Match: A0A2D8PQR5_9PROT (Short-chain dehydrogenase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PQR5_9PROT)

HSP 1 Score: 388 bits (996), Expect = 4.860e-134
Identity = 189/245 (77.14%), Postives = 210/245 (85.71%), Query Frame = 1
Query:    1 LDQAVAEIDGECIAAPGDVSSPDDAKRIVDDALAAFGRLDILVNNAGLGPERFRDTDRSNAKMIWEIDLADWRLYLDVNTTGHFVMTQAVMPHLLGQDWGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVDGTGVTCNVLIPGGPADTRMISATGVYENRDKLIRPDVMVPPLLHLVSDDGGAINNRRFRAALWDTHLDPAENLANCGDPIAWPQLGGKTIRPDNDPRGTKNTGVEN 735
            LD+AVAEI G+C+    DVS P +  RIV++    FG + ILVNNAGLGP+RFR+TDRSNAKMIWEID +DW+L+LDVNTTGHFVMTQAVMPH+L Q WGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGV+GTGVTCNVLIPGGPADTRMISA+GVY NRD LI+PDVM PPLLHLVS++GGA+NNRRFRAALWD   D A N+   GDPIAWPQLGG+ IRP  DPRG  NTG EN
Sbjct:   43 LDEAVAEIGGDCVGIAADVSKPVEGLRIVEETRKVFGGIHILVNNAGLGPQRFRNTDRSNAKMIWEIDFSDWQLFLDVNTTGHFVMTQAVMPHMLEQGWGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVEGTGVTCNVLIPGGPADTRMISASGVYANRDLLIQPDVMNPPLLHLVSEEGGAVNNRRFRAALWDPANDAAVNMEASGDPIAWPQLGGQAIRPKGDPRGNVNTGREN 287          
BLAST of mRNA_L-digitata_M_contig100295.1.1 vs. uniprot
Match: A0A2W1AXW3_9CHLR (3-oxoacyl-[acyl-carrier protein] reductase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W1AXW3_9CHLR)

HSP 1 Score: 197 bits (500), Expect = 5.850e-59
Identity = 101/214 (47.20%), Postives = 130/214 (60.75%), Query Frame = 1
Query:   52 DVSSPDDAKRIVDDALAAFGRLDILVNNAGLGPERFRDTDRSNAKMIWEIDLADWRLYLDVNTTGHFVMTQAVMPHLLGQDWGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVDGTGVTCNVLIPGGPADTRMISATGVYENRDKLIRPDVMVPPLLHLVSDDGGAINNRRFRAALWDTHLDPAENLANCGDPIAWPQLGGKTIRP 693
            D++  + A+R+V D +A FG L I+VNNAG+GPE  R     N    WE+D++ WR  + VN T  F+M  A + H+  Q WGRI+NVTTSLDTM       YGP KA  EA   ++A  ++GTGVT NVLIPGGP +TRM    G  + R++LI+PDVM  P++ L SD       RRF A  WD  + P E  A   +P AWPQLGG  I P
Sbjct:   62 DLTKEETAERLVADTIAQFGGLHIVVNNAGIGPETIRADHFINPVKFWEMDISHWRRGIAVNGTAQFLMALASVKHMTAQGWGRIINVTTSLDTMLRPGFSIYGPGKAANEAFVAIMAQELEGTGVTANVLIPGGPVNTRMFPPIGNIK-REELIQPDVMAVPIVWLASDASAGWTGRRFIAGFWDATIPPEEAAAKASNPAAWPQLGGNAIMP 274          
BLAST of mRNA_L-digitata_M_contig100295.1.1 vs. uniprot
Match: A0A2D8PQR3_9PROT (Short-chain dehydrogenase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PQR3_9PROT)

HSP 1 Score: 194 bits (493), Expect = 8.620e-58
Identity = 105/215 (48.84%), Postives = 133/215 (61.86%), Query Frame = 1
Query:   52 DVSSPDDAKRIVDDALAAFGRLDILVNNAGLGPERFRDTDRSNAKMIWEIDLADWRLYLDVNTTGHFVMTQAVMPHLLGQDWGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVDGTGVTCNVLIPGGPADTRMI-SATGVYENRDKLIRPDVMVPPLLHLVSDDGGAINNRRFRAALWDTHLDPAENLANCGDPIAWPQLGGKTIRP 693
            DV+  D A+  +   +  FG  DIL+N+A +GP+ F D   ++    WE+D+  W   L VN  G  +M+    PHLL + WGRI+NVTTSLDTM     GAYGPSKA  EA   ++A  +DGTGVT NVLIPGGPA+TRMI  ATG   +R++L++P  M  P+  L S D   INN RF AALWD  L P E +A  G PIAW Q+G    RP
Sbjct:   67 DVTDRDRAEAAIQTTIDTFGGFDILINDAAMGPQFFTDNFTADTPKFWEVDIDLWHRVLTVNAHGPQLMSTVSAPHLLDRGWGRIINVTTSLDTMYLKGCGAYGPSKAALEANTRIMAQDLDGTGVTANVLIPGGPANTRMIPEATGF--DREELVQPGAMQAPICWLCSTDADDINNMRFIAALWDETLPPQERIAAAGAPIAWAQIGSIAKRP 279          
BLAST of mRNA_L-digitata_M_contig100295.1.1 vs. uniprot
Match: A0A520NMV9_9PROT (SDR family oxidoreductase n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NMV9_9PROT)

HSP 1 Score: 192 bits (488), Expect = 4.870e-57
Identity = 106/236 (44.92%), Postives = 143/236 (60.59%), Query Frame = 1
Query:    1 LDQAVAEID-----GECIAAPGDVSSPDDAKRIVDDALAAFGRLDILVNNAGLGPERFRDTDRSNAKMIWEIDLADWRLYLDVNTTGHFVMTQAVMPHLLGQDWGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVDGTGVTCNVLIPGGPADTRMISATGVYENRDKLIRPDVMVPPLLHLVSDDGGAINNRRFRAALWDTHLDPAENLANCGDPIAWPQLGGKTIRP 693
            L  AVA+++     G  +A P DV+  + ++ ++D  + AFG  DIL+N+A +GP+ F D   ++    WE D+  W   L VN  G  +M     PHL+ + WGRI+NVTTSLDTM     GAYGPSKA  EA   ++A  +DGTGVT NVLIPGGPA+TRMI     ++ RD+L++P+VM  P+  L S D   I+N RF AA+WD  L   E +A  G P AW Q+G    RP
Sbjct:   45 LAAAVADVETAGGQGCALAIPADVTDTEKSQVVIDCTIDAFGGFDILINDAAMGPQFFTDNFVAHTPKFWEHDVDLWHRVLTVNAYGPQLMATVAAPHLVDRGWGRIINVTTSLDTMYLRGCGAYGPSKAALEANTRIMAQDLDGTGVTANVLIPGGPANTRMIPEAMGFD-RDELVQPEVMQAPMNWLCSTDADDISNMRFIAAMWDESLPREERIAAAGAPTAWAQIGSVAKRP 279          
BLAST of mRNA_L-digitata_M_contig100295.1.1 vs. uniprot
Match: A0A1Z9IWD8_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TMED167 TaxID=1986863 RepID=A0A1Z9IWD8_9PROT)

HSP 1 Score: 190 bits (483), Expect = 3.080e-56
Identity = 97/207 (46.86%), Postives = 131/207 (63.29%), Query Frame = 1
Query:   52 DVSSPDDAKRIVDDALAAFGRLDILVNNAGLGPERFRDTDRSNAKMIWEIDLADWRLYLDVNTTGHFVMTQAVMPHLLGQDWGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVDGTGVTCNVLIPGGPADTRMISATGVYENRDKLIRPDVMVPPLLHLVSDDGGAINNRRFRAALWDTHLDPAENLANCGDPIAWPQL 672
            D+S  DD K  VD   + FG +D LVNNAGLG    R     N   IW++D A+WR  ++VNT G F+MT+  +PH++ +  GR++NVTT+  TM     GAYGPSKAG E++ +++   ++ TGVT NV++PGGPADT  I   G+ ++R  L+RPDVMVPP+  L SD    +N  RF AA WD  L P E +A    PIAW +L
Sbjct:   67 DISDEDDTKSFVDQVCSTFGHIDGLVNNAGLGCAAVRPDFLVNPIPIWKLDPAEWRRVVEVNTIGTFLMTRWAVPHMVARGSGRLLNVTTTFQTMLAPAFGAYGPSKAGIESMTSILVDELEDTGVTVNVVVPGGPADTEQIPE-GMVKDRGDLLRPDVMVPPIRWLCSDAASKVNGLRFSAAEWDDELPPEEAIAQSTKPIAWREL 272          
BLAST of mRNA_L-digitata_M_contig100295.1.1 vs. uniprot
Match: A0A2W1B1X1_9CHLR (3-oxoacyl-[acyl-carrier protein] reductase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W1B1X1_9CHLR)

HSP 1 Score: 188 bits (478), Expect = 4.250e-56
Identity = 100/214 (46.73%), Postives = 130/214 (60.75%), Query Frame = 1
Query:   52 DVSSPDDAKRIVDDALAAFGRLDILVNNAGLGPERFRDTDRSNAKMIWEIDLADWRLYLDVNTTGHFVMTQAVMPHLLGQDWGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVDGTGVTCNVLIPGGPADTRMISATGVYENRDKLIRPDVMVPPLLHLVSDDGGAINNRRFRAALWDTHLDPAENLANCGDPIAWPQLGGKTIRP 693
            DV+SP+DA+R+V   L+ FG L +L+NNAG           +  +  W +  A W   + VN +G F MT+A MPHLL Q WGRI+ VTTSLDTM   +   YGPSKAG EAL   +A  ++GTGVT NVL+PGGP +T ++     ++ R KLI+PDVM+ P++ L S+    IN RRF A  WD  L  AE +     P AWPQL  K I P
Sbjct:   31 DVTSPEDAERVVATTLSEFGGLHVLINNAGTNQLNV-GASSTTFEPFWTVTPAGWARVVAVNFSGPFYMTRAAMPHLLEQKWGRIIGVTTSLDTMIRVSMSPYGPSKAGHEALVATMAQDMEGTGVTANVLVPGGPVNTNLLPPDTHFD-RQKLIQPDVMMIPVIWLASEQSDGINGRRFIAYEWDESLPLAERMEKASAPAAWPQLESKAIYP 242          
BLAST of mRNA_L-digitata_M_contig100295.1.1 vs. uniprot
Match: A0A225MLB1_9BURK (Short-chain dehydrogenase n=1 Tax=Candidimonas nitroreducens TaxID=683354 RepID=A0A225MLB1_9BURK)

HSP 1 Score: 187 bits (476), Expect = 3.010e-55
Identity = 100/231 (43.29%), Postives = 130/231 (56.28%), Query Frame = 1
Query:    1 LDQAVAEIDGECIAAPGDVSSPDDAKRIVDDALAAFGRLDILVNNAGLGPERFRDTDRSNAKMIWEIDLADWRLYLDVNTTGHFVMTQAVMPHLLGQDWGRIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVDGTGVTCNVLIPGGPADTRMISATGVYENRDKLIRPDVMVPPLLHLVSDDGGAINNRRFRAALWDTHLDPAENLANCGDPIAWPQLGGKTIRP 693
            L QA+     + +A PGD+   D    +VD A+A FG +  +VNNAG G    R          WE+D A W+  +D+NT   F+M +AV PHL+ Q WGRIVNVTTSLDTM       YGPSKA  EA     +  +   GVTCN L+PGG  +T    A    + R  LI+PD M+PP+  L+S+DGGA    RF A LWD  L P+E    CG P AW  +G +++ P
Sbjct:   51 LAQAITAAGDKALAVPGDICDIDVCHSVVDRAIAHFGAVHGVVNNAGRGMTAIRADYLDRPVPFWEVDPALWQSLMDLNTKAPFLMARAVAPHLVAQKWGRIVNVTTSLDTMYRAAYTPYGPSKAWLEAATVGWSRDLASHGVTCNALLPGGAVNTAFFDAHAPLD-RSTLIQPDAMIPPICWLLSEDGGATTGYRFVARLWDASLPPSEAAMKCGSPAAWQSMGAQSLWP 280          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100295.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A520NMX0_9PROT4.610e-13978.86SDR family oxidoreductase n=2 Tax=Rhodospirillacea... [more]
A0A2S6Q5E6_9PROT2.180e-13777.963-oxoacyl-[acyl-carrier-protein] reductase 1 n=1 T... [more]
A0A2D8G7M2_9PROT1.000e-13477.46Short-chain dehydrogenase n=1 Tax=Alphaproteobacte... [more]
A0A2D8PQR5_9PROT4.860e-13477.14Short-chain dehydrogenase n=1 Tax=Rhodospirillacea... [more]
A0A2W1AXW3_9CHLR5.850e-5947.203-oxoacyl-[acyl-carrier protein] reductase n=1 Tax... [more]
A0A2D8PQR3_9PROT8.620e-5848.84Short-chain dehydrogenase n=1 Tax=Rhodospirillacea... [more]
A0A520NMV9_9PROT4.870e-5744.92SDR family oxidoreductase n=2 Tax=Rhodospirillacea... [more]
A0A1Z9IWD8_9PROT3.080e-5646.86Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A2W1B1X1_9CHLR4.250e-5646.733-oxoacyl-[acyl-carrier protein] reductase n=1 Tax... [more]
A0A225MLB1_9BURK3.010e-5543.29Short-chain dehydrogenase n=1 Tax=Candidimonas nit... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100295contigL-digitata_M_contig100295:1..741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog264198.Reut_C6315
PFAMsadh_short
Model size741
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC00029,RC00117
KEGG koko:K00059
KEGG ReactionR04533,R04534,R04536,R04543,R04566,R04953,R04964,R07759,R07763,R10116,R10120,R11671
KEGG Pathwayko00061,ko00333,ko00780,ko01040,ko01100,ko01130,ko01212,map00061,map00333,map00780,map01040,map01100,map01130,map01212
KEGG ModuleM00083,M00572
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.38e-50
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,1RI2A@1224|Proteobacteria,2W77Q@28216|Betaproteobacteria,1KE10@119060|Burkholderiaceae
EC1.1.1.100
DescriptionEnoyl-(Acyl carrier protein) reductase
Cds size741
COG categoryIQ
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406605.7017176-CDS-L-digitata_M_contig100295:0..7411682406605.7017176-CDS-L-digitata_M_contig100295:0..741Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100295 1..741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100295.1.1prot_L-digitata_M_contig100295.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100295 1..741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100295.1.1

>prot_L-digitata_M_contig100295.1.1 ID=prot_L-digitata_M_contig100295.1.1|Name=mRNA_L-digitata_M_contig100295.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=247bp
LDQAVAEIDGECIAAPGDVSSPDDAKRIVDDALAAFGRLDILVNNAGLGP
ERFRDTDRSNAKMIWEIDLADWRLYLDVNTTGHFVMTQAVMPHLLGQDWG
RIVNVTTSLDTMTNYTNGAYGPSKAGAEALATMIAGGVDGTGVTCNVLIP
GGPADTRMISATGVYENRDKLIRPDVMVPPLLHLVSDDGGAINNRRFRAA
LWDTHLDPAENLANCGDPIAWPQLGGKTIRPDNDPRGTKNTGVEND*
back to top

mRNA from alignment at L-digitata_M_contig100295:1..741+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100295.1.1 ID=mRNA_L-digitata_M_contig100295.1.1|Name=mRNA_L-digitata_M_contig100295.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=741bp|location=Sequence derived from alignment at L-digitata_M_contig100295:1..741+ (Laminaria digitata LdigPH10_18mv male)
CTCGATCAGGCCGTCGCCGAGATCGACGGTGAATGCATTGCCGCGCCTGG CGATGTCTCCAGCCCGGACGACGCAAAAAGGATCGTGGACGATGCGTTGG CCGCTTTTGGCCGCCTGGATATCCTGGTCAATAACGCGGGGCTGGGGCCC GAACGCTTCCGCGACACGGATCGCTCCAACGCAAAGATGATCTGGGAAAT CGATCTGGCGGACTGGCGGCTTTATCTCGACGTCAATACGACCGGTCATT TCGTGATGACCCAGGCGGTGATGCCGCATCTTCTGGGACAGGACTGGGGG CGCATCGTCAACGTCACCACCAGCCTCGATACGATGACCAACTACACAAA CGGCGCCTACGGGCCTTCAAAGGCGGGCGCCGAGGCTCTGGCCACAATGA TCGCGGGCGGCGTTGACGGCACGGGTGTGACCTGCAACGTGCTTATCCCG GGCGGCCCGGCCGATACGCGGATGATCTCGGCAACCGGCGTCTACGAGAA CCGCGACAAGCTGATCCGGCCGGATGTCATGGTGCCGCCCCTGCTGCACC TCGTGTCCGACGACGGCGGCGCGATCAACAACCGGCGTTTCCGCGCCGCC TTGTGGGATACCCACCTTGATCCTGCCGAGAATTTGGCAAACTGCGGCGA TCCGATCGCCTGGCCCCAACTCGGCGGCAAGACCATCCGCCCGGATAACG ATCCGCGCGGCACCAAAAACACAGGGGTCGAAAATGACTGA
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig100295:1..741+

>mRNA_L-digitata_M_contig100295.1.1 ID=mRNA_L-digitata_M_contig100295.1.1|Name=mRNA_L-digitata_M_contig100295.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=741bp|location=Sequence derived from alignment at L-digitata_M_contig100295:1..741+ (Laminaria digitata LdigPH10_18mv male)
CTCGATCAGGCCGTCGCCGAGATCGACGGTGAATGCATTGCCGCGCCTGG
CGATGTCTCCAGCCCGGACGACGCAAAAAGGATCGTGGACGATGCGTTGG
CCGCTTTTGGCCGCCTGGATATCCTGGTCAATAACGCGGGGCTGGGGCCC
GAACGCTTCCGCGACACGGATCGCTCCAACGCAAAGATGATCTGGGAAAT
CGATCTGGCGGACTGGCGGCTTTATCTCGACGTCAATACGACCGGTCATT
TCGTGATGACCCAGGCGGTGATGCCGCATCTTCTGGGACAGGACTGGGGG
CGCATCGTCAACGTCACCACCAGCCTCGATACGATGACCAACTACACAAA
CGGCGCCTACGGGCCTTCAAAGGCGGGCGCCGAGGCTCTGGCCACAATGA
TCGCGGGCGGCGTTGACGGCACGGGTGTGACCTGCAACGTGCTTATCCCG
GGCGGCCCGGCCGATACGCGGATGATCTCGGCAACCGGCGTCTACGAGAA
CCGCGACAAGCTGATCCGGCCGGATGTCATGGTGCCGCCCCTGCTGCACC
TCGTGTCCGACGACGGCGGCGCGATCAACAACCGGCGTTTCCGCGCCGCC
TTGTGGGATACCCACCTTGATCCTGCCGAGAATTTGGCAAACTGCGGCGA
TCCGATCGCCTGGCCCCAACTCGGCGGCAAGACCATCCGCCCGGATAACG
ATCCGCGCGGCACCAAAAACACAGGGGTCGAAAATGACTGA
back to top