mRNA_L-digitata_M_contig10029.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig10029.1.1 vs. uniprot
Match: D7FLH8_ECTSI (FAM184 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLH8_ECTSI) HSP 1 Score: 189 bits (480), Expect = 3.200e-53 Identity = 103/128 (80.47%), Postives = 116/128 (90.62%), Query Frame = 1
Query: 1 RRQQMATEAREAALVSKHATEFSHAVGRQRDDLREAETSFLEKEQDLSARIDALQQEQKRLEHRYDNRPSREEDISRIRRLENDAIERESLVARAREEMAFFKRELLNREENYNKKFNANPVVGVMQV 384
R Q++AT AREA LVSKHATE SHAVGRQRD+LREA++ F EKE+DLS RIDALQQEQ+RLE+RY+NRPSREED+ RIR+LE DAIE ++ ARAREEMAFFKRELLNREENYNKKFNANPVVGVMQV
Sbjct: 965 RNQRLATAAREATLVSKHATELSHAVGRQRDELREAQSRFGEKERDLSNRIDALQQEQRRLENRYENRPSREEDVKRIRQLEVDAIESRNVAARAREEMAFFKRELLNREENYNKKFNANPVVGVMQV 1092
BLAST of mRNA_L-digitata_M_contig10029.1.1 vs. uniprot
Match: A0A6H5KR93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR93_9PHAE) HSP 1 Score: 139 bits (349), Expect = 1.430e-35 Identity = 86/132 (65.15%), Postives = 99/132 (75.00%), Query Frame = 1
Query: 1 RRQQMATEAREAALVSKHATEFSHAVGRQRDDLREAETSFLEKEQDLSARIDALQQEQKRLE----HRYDNRPSREEDISRIRRLENDAIERESLVARAREEMAFFKRELLNREENYNKKFNANPVVGVMQV 384
R Q++AT AREAALVSKHATE SHAVGRQRD+LR L+ + +A + K L + Y+NRPSREED+ RIR+LE DAIE ++ ARAREEMAFFKRELLNREENYNKKFNANPVVGVMQV
Sbjct: 1003 RNQRLATAAREAALVSKHATELSHAVGRQRDELRHF-IDLLDLAKPFAAISFIVIFTAKGLHTIKLNSYENRPSREEDVKRIRQLEADAIESRNVAARAREEMAFFKRELLNREENYNKKFNANPVVGVMQV 1133
BLAST of mRNA_L-digitata_M_contig10029.1.1 vs. uniprot
Match: A0A7S2RG16_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RG16_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 5.900e-22 Identity = 63/126 (50.00%), Postives = 81/126 (64.29%), Query Frame = 1
Query: 7 QQMATEAREAALVSKHATEFSHAVGRQRDDLREAETSFLEKEQDLSARIDALQQEQKRLEHRYDNRPSREEDISRIRRLENDAIERESLVARAREEMAFFKRELLNREENYNKKFNANPVVGVMQV 384
QQ +E REA L S HATE + RQ + +E Q+L ++D LQ E L HR++ R SR ED++RI L N +E + LV + +EEM +FKRELLNREEN+NKKFNA+P VGVMQV
Sbjct: 232 QQARSEEREAHLRSTHATECE-TLRRQHEYDKEG------MRQELQGKLDMLQSEFNELFHRWETRESRPEDLARIEELTNQMVEMDKLVKKTQEEMVYFKRELLNREENFNKKFNAHPNVGVMQV 350
BLAST of mRNA_L-digitata_M_contig10029.1.1 vs. uniprot
Match: A0A835ZEA9_9STRA (B30.2/SPRY domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEA9_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 3.690e-16 Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = 1
Query: 160 LQQEQKRLEHRYDNRPSREEDISRIRRLENDAIERESLVARAREEMAFFKRELLNREENYNKKFNANPVVGVMQV 384
L++E + E R+ +RPSR ED++RI LE + ER++ RA EE A+FKRELLNREE YN+KFNANPVVGVMQV
Sbjct: 943 LRRELAQSEARFVDRPSRAEDVARIEALEGEVRERDARARRALEETAYFKRELLNREEMYNRKFNANPVVGVMQV 1017
BLAST of mRNA_L-digitata_M_contig10029.1.1 vs. uniprot
Match: A0A7S1WKI1_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WKI1_ALECA) HSP 1 Score: 77.8 bits (190), Expect = 9.770e-15 Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 1
Query: 37 ALVSKHATEFSHAVGRQRDDLREAETSFLEKEQDLSARIDALQQEQKRLEHRYDNRPSREEDISRIRRLENDAIERESLVARAREEMAFFKRELLNREENYNKKFNANPVVGVM 378
+L +H E + Q + E F Q A+++ LQ+ + L+ YD+RPSREED++ I L+ + E+ ++V + EEM F+K EL+NRE+NYNK F A P+VGVM
Sbjct: 116 SLKEQHKAELERLLEAQLQETEEMREQFDRARQMQDAQLELLQKRVQELQELYDSRPSREEDLALIATLQAEVEEKTAMVKKLTEEMQFYKLELVNREQNYNKVFGAAPMVGVM 229
BLAST of mRNA_L-digitata_M_contig10029.1.1 vs. uniprot
Match: A0A7S0SRQ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SRQ1_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 1.080e-14 Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 1
Query: 193 YDNRPSREEDISRIRRLENDAIERESLVARAREEMAFFKRELLNREENYNKKFNANPVVGVMQV 384
Y+NR SR EDI +I L N E+ ++ + +EM ++KREL+NRE+N+N KFNANPVVGVMQV
Sbjct: 1 YNNRESRNEDIEKINYLTNQVNEKNIMINKINDEMIYYKRELINREDNFNHKFNANPVVGVMQV 64
BLAST of mRNA_L-digitata_M_contig10029.1.1 vs. uniprot
Match: A0A1R2BZ94_9CILI (FAM184 domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BZ94_9CILI) HSP 1 Score: 77.8 bits (190), Expect = 3.810e-14 Identity = 47/119 (39.50%), Postives = 70/119 (58.82%), Query Frame = 1
Query: 22 EAREAALVSKHATEFSHAVGRQRDDLREAETSFLEKEQDLSARIDALQQEQKRLEHRYDNRPSREEDISRIRRLENDAIERESLVARAREEMAFFKRELLNREENYNKKFNANPVVGVM 378
E RE L SK +E H + + + + F + + R LQ+ + L+ YDNRPSREEDI+ I+ L+ + ++ + +A E+M F+K EL+NREENYNK F A+P VGV+
Sbjct: 928 EKREGELRSKFKSERDHLLKEHLELTTQLQKEFQSTTEMMEERFQQLQKRYEDLQDMYDNRPSREEDIALIKHLQEELQTKDEALKKAFEDMKFYKLELINREENYNKVFGASPNVGVL 1046
BLAST of mRNA_L-digitata_M_contig10029.1.1 vs. uniprot
Match: A0A7S3G9D3_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G9D3_9EUKA) HSP 1 Score: 74.3 bits (181), Expect = 2.860e-13 Identity = 40/87 (45.98%), Postives = 59/87 (67.82%), Query Frame = 1
Query: 118 FLEKEQDLSARIDALQQEQKRLEHRYDNRPSREEDISRIRRLENDAIERESLVARAREEMAFFKRELLNREENYNKKFNANPVVGVM 378
F+ E+ + + L+Q+ LE RY+NR SR+ED+++I+ L +RE+ V R +EEM +FK EL+NREEN+N +F PVVGVM
Sbjct: 180 FIAAEERMKEKNALLEQQYAELEVRYNNRESRQEDLAKIKELAEQVAKREAEVDRMKEEMKYFKLELINREENFNARFGRQPVVGVM 266
BLAST of mRNA_L-digitata_M_contig10029.1.1 vs. uniprot
Match: A0A7S3MQG8_9CILI (Hypothetical protein (Fragment) n=1 Tax=Fabrea salina TaxID=342563 RepID=A0A7S3MQG8_9CILI) HSP 1 Score: 74.3 bits (181), Expect = 5.580e-13 Identity = 44/117 (37.61%), Postives = 68/117 (58.12%), Query Frame = 1
Query: 28 REAALVSKHATEFSHAVGRQRDDLREAETSFLEKEQDLSARIDALQQEQKRLEHRYDNRPSREEDISRIRRLENDAIERESLVARAREEMAFFKRELLNREENYNKKFNANPVVGVM 378
RE L +K E + + + + + F + + R L+++ + L+ Y NRPSREED+ I+ L+ + +E + +A E+M FFK EL+NREENYNK F A+PVVGV+
Sbjct: 339 RETELKNKFKAERDNLINEHLEATSQLQQDFQNTTEMMEERYLQLEKKHEELQELYYNRPSREEDLELIKHLQEELNTKEEALKKAFEDMKFFKLELINREENYNKVFGASPVVGVL 455
BLAST of mRNA_L-digitata_M_contig10029.1.1 vs. uniprot
Match: K3WCF3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCF3_GLOUD) HSP 1 Score: 70.5 bits (171), Expect = 1.680e-12 Identity = 40/67 (59.70%), Postives = 46/67 (68.66%), Query Frame = 1
Query: 184 EHRYDNRPSREEDISRIRRLENDAIERESLVARAREEMAFFKRELLNREENYNKKFNANPVVGVMQV 384
E RY R SR ED+SRI LE +ERE+LV + +EM +FKRELLNREE YNK F P VGVM V
Sbjct: 41 EDRYARRESRLEDVSRIADLERAVVEREALVKQTLDEMVYFKRELLNREEMYNKTFARTPNVGVMNV 107 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10029.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig10029.1.1 >prot_L-digitata_M_contig10029.1.1 ID=prot_L-digitata_M_contig10029.1.1|Name=mRNA_L-digitata_M_contig10029.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=124bp MATEAREAALVSKHATEFSHAVGRQRDDLREAETSFLEKEQDLSARIDALback to top mRNA from alignment at L-digitata_M_contig10029:5057..8299+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig10029.1.1 ID=mRNA_L-digitata_M_contig10029.1.1|Name=mRNA_L-digitata_M_contig10029.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=3243bp|location=Sequence derived from alignment at L-digitata_M_contig10029:5057..8299+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig10029:5057..8299+ >mRNA_L-digitata_M_contig10029.1.1 ID=mRNA_L-digitata_M_contig10029.1.1|Name=mRNA_L-digitata_M_contig10029.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=372bp|location=Sequence derived from alignment at L-digitata_M_contig10029:5057..8299+ (Laminaria digitata LdigPH10_18mv male)back to top |