mRNA_L-digitata_M_contig100284.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
|
Overview
Homology
BLAST of mRNA_L-digitata_M_contig100284.1.1 vs. uniprot
Match: A0A2D9CBT4_9BACT (Uncharacterized protein n=3 Tax=Phycisphaerae TaxID=666505 RepID=A0A2D9CBT4_9BACT) HSP 1 Score: 511 bits (1316), Expect = 1.000e-179 Identity = 238/310 (76.77%), Postives = 275/310 (88.71%), Query Frame = 1
Query: 1 VFRYLRMALPMPQNASYGVLAAFIAFWLVTKRSSYFRRMPQLATALWIFSFLVLISTFVLPDLQPINDRFHEQHPNNAMGLFMLPISIFGFMLCPYLDVTFHHARQQLDTRARGRIGFTLGFGLMFALMIVLTTRYAPMVLDAMNGQMTNPTQTKWIGAVLLAHILFQWAFTVQVHLDQVKPLPIEKVPPYRMLIGIALGAGMVGFFAQNLPRFAGLEGGEIVYRSFLGAYGLVFPTYVLYRIVMARNGRKPLSIGAMWGAIIVATPMFWMGFMQGESVWLAPGIAIVLLVAGIGVINRTQGVAGRSASK 930
+F+YLRM L M QNASYGVLAAFIAFWLVTKRSSYF+RMPQLAT LWIFS LVL++TFV PDL P+N RFHE HP++AMGLF+LPIS FGF+LCPYLDVTFHHARQQL ++ RGRIGF++GFGLMFALMIVLTTRYAPM++DA+NGQ NPTQT WIGAVLLAHILFQW FTVQVHLD+VK +PI+ VPPY MLIG+AL AG++GFFA NLP AGL GGEIVYR F+GAYGLVFPTYVLYR V+ARNG KP+S+ A+WGAI++ATPMFW+GFMQGESVWLAPG+ IVL++A IG++NR QGV G A +
Sbjct: 103 IFQYLRMGLYMSQNASYGVLAAFIAFWLVTKRSSYFKRMPQLATVLWIFSALVLVATFVTPDLGPVNQRFHEAHPSSAMGLFLLPISTFGFLLCPYLDVTFHHARQQLGSKQRGRIGFSVGFGLMFALMIVLTTRYAPMLVDALNGQQANPTQTAWIGAVLLAHILFQWVFTVQVHLDRVKAMPIKSVPPYNMLIGVALLAGLIGFFATNLPTIAGLSGGEIVYRCFIGAYGLVFPTYVLYRAVLARNGTKPMSMFAVWGAIVLATPMFWLGFMQGESVWLAPGMGIVLMIAAIGLVNRKQGVTGSVAGQ 412
BLAST of mRNA_L-digitata_M_contig100284.1.1 vs. uniprot
Match: A0A7Z9PZT3_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PZT3_9BACT) HSP 1 Score: 268 bits (686), Expect = 9.150e-87 Identity = 124/163 (76.07%), Postives = 145/163 (88.96%), Query Frame = 1
Query: 1 VFRYLRMALPMPQNASYGVLAAFIAFWLVTKRSSYFRRMPQLATALWIFSFLVLISTFVLPDLQPINDRFHEQHPNNAMGLFMLPISIFGFMLCPYLDVTFHHARQQLDTRARGRIGFTLGFGLMFALMIVLTTRYAPMVLDAM-NGQMTNPTQTKWIGAVLL 486
VF YLRMALPM QNASYG++AAFIAFWLVTKRS YF+RMPQL+ LW+ SFLVL+STFV PDL PI+DRFH+ HP+NAMGLF++P+S FGF+LCPYLD+TFHHARQQLDT+ RGRIGFT+GF +MFA MIVLTTRYAPM++DA+ NG + N TQT WIGAVLL
Sbjct: 68 VFEYLRMALPMTQNASYGLIAAFIAFWLVTKRSGYFKRMPQLSVVLWVLSFLVLVSTFVTPDLGPISDRFHDSHPSNAMGLFLIPLSTFGFLLCPYLDITFHHARQQLDTKQRGRIGFTIGFVIMFASMIVLTTRYAPMIIDALDNGTVANATQTPWIGAVLL 230
BLAST of mRNA_L-digitata_M_contig100284.1.1 vs. uniprot
Match: A0A4P6PIS2_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium S94 TaxID=2488809 RepID=A0A4P6PIS2_9BACT) HSP 1 Score: 223 bits (569), Expect = 6.220e-67 Identity = 122/293 (41.64%), Postives = 172/293 (58.70%), Query Frame = 1
Query: 1 VFRYLRMALPMPQNASYGVLAAFIAFWLVTKRSSYFRRMPQLATALWIFSFLVLISTFVLPDLQPINDRFHEQHPNNAMGLFMLPISIFGFMLCPYLDVTFHHARQQLDTRARGRIGFTLGFGLMFALMIVLTTRYAPMVLDAMNGQMTNPTQTKWIGAVLLAHILFQWAFTVQVHLDQVKPLPIEKVPPYRMLIGIALGAGMVGFFAQNLPRFAGLEGGEIVYRSFLGAYGLVFPTYVLYRIVMARNGRKPLSIGAMWGAIIVATPMFWMGFMQGESVWLAPGIAIVLLVAG 879
+FR L L +P G F AF L+ + + + + A L S VL+ TF LQ N + +A MLP+ FGF+LCPYLDVTFHHARQ+L+T ++GR+GFT+GF L F MI LTTRYA + ++G+ + + +L HI+ QW FTV VHLD+++ LP + + + + AGM+G F LP + GL GEIVYR F+ AYGL+FP Y+LYR+++ + S MW A++ +P FWMGF++ +SVWL PG+A LL+AG
Sbjct: 98 LFRLLFRGLEIPGIWIAGGFGVFGAFVLLIGWALFRGSVQKSALVLLALSLTVLLGTFFSSGLQSANATLVQSAKPSAEPFRMLPVMFFGFLLCPYLDVTFHHARQKLETASKGRLGFTIGFVLFFPFMIFLTTRYAGIFNTVIDGERIIFPLSPLLAIGILLHIICQWFFTVTVHLDRIRTLPGIGARKKGLAV-LLIPAGMIGAFVPELPMYQGLTAGEIVYRLFMSAYGLIFPAYMLYRVIVRKKAAA--SPWVMWIAMLCTSPFFWMGFIERQSVWLLPGLA--LLIAG 385
BLAST of mRNA_L-digitata_M_contig100284.1.1 vs. uniprot
Match: A0A3M2CUJ2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2CUJ2_9BACT) HSP 1 Score: 189 bits (479), Expect = 1.050e-53 Identity = 115/301 (38.21%), Postives = 159/301 (52.82%), Query Frame = 1
Query: 10 YLRMALPMPQNASYGVLAAFIAFWLVTKRSSYFRRMPQLATALWIFSFLVLISTFVLPD-LQPINDRFHEQHPNNAMGLFMLPISIFGFMLCPYLDVTFHHARQQLDTRARGRIGFTLGFGLMFALMIVLTTRYAPMVLDAMNGQMTNPTQTKWIGAVLLAHILFQWAFTVQVHLDQVKPL---PIEKVPPYRML----IGIA------LGAGMVGFFAQNLPRFAGLEGGEIVYRSFLGAYGLVFPTYVLYRIVMARNGRKPLSIGAMW-GAIIVATPMFWMGFMQGESVWLAPGIAIVL 867
+LR P+P G LA +A+ + R P+ A LW+ VL+S P L P + + L+++P+ +FGFMLCPYLD+TF AR+ D GR+ F GF ++F +MI LT Y VL + G+ PT W GA +L HI QW FTV+VH +++ P+ RML G++ +GAG+ G A NL AGL GEI YR F+ AYGLVFP YV R++ R+ S A W GA ++A P FWMG ++ + +WLAPG+ I L
Sbjct: 72 FLRQVFPIPDTWIMGSLAVGVAWAISLGRVLRRGAGPRAALLLWLVGLGVLVSVLSSPGALGPGTAAMIDPPTHPGSALWLMPVCVFGFMLCPYLDLTFLLARRSTDGGRGGRVAFGFGFWVLFPVMIGLTVVYTGPVLAVLEGR-AEPTAAPWAGAAVLLHIFAQWIFTVRVHAERLTSPGVGPVSSEERGRMLWSDPFGVSTALVACIGAGLAGMAAPNLMPHAGLSAGEIGYRLFMAAYGLVFPVYVWGRMIP----RRRRSSHAGWVGACVLAAPFFWMGMIERQGIWLAPGMIIAL 367
BLAST of mRNA_L-digitata_M_contig100284.1.1 vs. uniprot
Match: A0A5M4D738_9CYAN (Uncharacterized protein n=1 Tax=Cyanobacteria bacterium CYA TaxID=2484221 RepID=A0A5M4D738_9CYAN) HSP 1 Score: 180 bits (456), Expect = 4.230e-50 Identity = 114/277 (41.16%), Postives = 154/277 (55.60%), Query Frame = 1
Query: 118 PQLATALWIFSFLVLISTFVLPDLQPINDRFHEQHPNNAMGLFMLPISIFGFMLCPYLDVTFHHARQQLDTRARGRIGFTLGFGLMFALMIVLTTRYAPMVLDAMNGQMTNPTQTKWIGAVLLAHILFQWAFTVQVHLDQVKPLPIEKVPPYRMLIGIALGAGMVGFFAQNLPRFAGLEGGEIVYRSFLGAYGLVFPTYVLYRIVMARNGRKPLS-------IGAMWGAIIVATPMFWMGFMQGESVWLAPGIAIVLLVAGIGVINRTQGVAGRSAS 927
P L +L +F ++ + LP F +Q P A+ L++ P+ +FGF LCPYLD TF AR +L R + R F++GFGL F MI+LT YAPM+L + G T +G LLAH+L Q AFTV H+ + + P + G L A +VG + LP AGL+ GE+VYR F+G YGLVFPTYV ++ AR G+ P + A+ +A PMFWMGF++ V+LAPG+AIVLL T G AG+SAS
Sbjct: 143 PLLVLSLGVFGLVLARTGLTLP-------TFTQQRPEPAL-LWLAPVCVFGFALCPYLDRTFLTARAELPGR-QARAAFSIGFGLFFLAMILLTLAYAPMLLPLLGGT----TAPFVVGVALLAHLLLQAAFTVAAHVRCAE----SRGSPDALRWGALLVAALVGVLVRVLPGHAGLDAGEVVYRLFMGLYGLVFPTYVWLVVIPARRGQAPPGSPQRRRLVRVFAAAVGLALPMFWMGFIERREVFLAPGLAIVLLARLF-----TTG-AGKSAS 396
BLAST of mRNA_L-digitata_M_contig100284.1.1 vs. uniprot
Match: A0A7V1LZJ7_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7V1LZJ7_9BACT) HSP 1 Score: 166 bits (420), Expect = 9.800e-45 Identity = 100/257 (38.91%), Postives = 139/257 (54.09%), Query Frame = 1
Query: 121 QLATALWIFSFLVLISTFVLPDLQPINDRFHEQHPNNAMGLFMLPISIFGFMLCPYLDVTFHHARQQLDTRARGRIGFTLGFGLMFALMIVLTTRYAPMVLDAMNGQM-TNPTQTKWIGAVLLAHILFQWAFTVQVHLDQV--KPLPIEKVPPYRMLIGIALGAGMVGFFAQNLPRFAGLEGGEIVYRSFLGAYGLVFPTYVLYRIVMARNGR----KPLSIGAMWGAIIVATPMFWMGFMQGESVWLAPGIAIVLL 870
++A +WI S +L++ + P P + L++ P SIFGF+LCPYLD+TFH ARQ TR +I F LGFG+ F MIVLT YA ++ +G T WIG L+AH+L Q FTV H ++ KP+P V ++ +A GA V +PR + GGEI YR FL YGLVFPTYV +V R R +S+ + II+A P F+ GF+ + + L PG+A++LL
Sbjct: 136 RMALVVWIISAGLLVALTLSPATTPSTVSIIADRSFSTDMLWLAPASIFGFLLCPYLDLTFHRARQGCATRTESKIAFGLGFGVFFFSMIVLTFLYAGPIVAMTDGDPETTAHVAPWIGVYLVAHLLIQLIFTVGAHSRELARKPVPDRWVFRGSVVFALAFGAAAVW-----VPRSFDMAGGEIGYRLFLSFYGLVFPTYVWLNMVDLRERRLAEPTAMSLRVTFWTIIIAAPFFFAGFILRQEIMLVPGVAMILL 387
BLAST of mRNA_L-digitata_M_contig100284.1.1 vs. uniprot
Match: UPI00198ECBD2 (Uncharacterized protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=UPI00198ECBD2) HSP 1 Score: 145 bits (366), Expect = 6.730e-37 Identity = 87/210 (41.43%), Postives = 120/210 (57.14%), Query Frame = 1
Query: 247 MLPISIFGFMLCPYLDVTFHHARQQLDTRARGRIGFTLGFGLMFALMIVLTTRYAPMVLDAMNGQMTNPTQTKWIGAVLLAHILFQWAFTVQVHLDQVKPLPIEKVPPYRMLIGIALGAGMVGFFAQNLPRFAGLEGGEIVYRSFLGAYGLVFPTYVLYRIVMARNGRKPL--SIGAMWGAIIVATPMFWMGFMQGESVWLAPGIAIVLL 870
+ P+ IFGF+LCPYLD+TFH ARQ L A R F++GFG++F LMIV + YA + A+ T P + A+ L H++ Q AFT+ H P EK+ R ++ L + +V F A N+ F L G E+VYR F+G YGL FP YV ++ R KP + GA+++A PMFWMGF+ WL PG+ +VLL
Sbjct: 191 LAPVCIFGFLLCPYLDITFHAARQALPVAAARR-AFSVGFGVLFLLMIVFSAIYAQPLAQALKHGHTLPAIA--VMAIGL-HMIGQIAFTMAAHARYHSP---EKL---RFIVLSFLTSFVVIFIAYNVYGFTKLAGDEMVYRMFMGFYGLAFPAYVWLCMIPGRGRLKPTRWQLTVFAGAVLIALPMFWMGFILQRLTWLLPGVGMVLL 390
BLAST of mRNA_L-digitata_M_contig100284.1.1 vs. uniprot
Match: A0A3M8FT06_9BACT (Uncharacterized protein n=1 Tax=Phycisphaera sp. TaxID=2030824 RepID=A0A3M8FT06_9BACT) HSP 1 Score: 139 bits (351), Expect = 1.270e-34 Identity = 96/286 (33.57%), Postives = 137/286 (47.90%), Query Frame = 1
Query: 52 GVLAAFIAFWLVTKRSSYFRRMPQLATALWIFSFLVLISTFVLPDLQPINDRFHEQHPNNAMGLFMLPISIFGFMLCPYLDVTFHHARQQLDTRARGRIGFTLGFGLMFALMIVLTTRYA-PMVLDAMNGQMTNPTQTKWIGAVLLAHILFQWAFTVQVH---LDQVKPLPIEKVPPYRMLIGIALGAGMVGFFAQNLPRFA----GLEGGEIVYRSFLGAYGLVFPTYV------LYRIVMARNGRKPLSIGAMWGAIIVATPMFWMGFMQGESVWLAPGIAIVL 867
GV A IA V FR + A A W+ S +L++ V P + P + L++LP S+FGF+ CPYLD+TFH AR T + R F +GFG+ F MIVLT YA P+ T WI A + H+ Q+ FT VH L++ + + IA G+ +LP + GEIVYR FL YGL+FPTYV + R + R R+ L + + AI++A+P F+MGF + ++ G+AI+L
Sbjct: 113 GVGATTIAVLSVGLLGRGFRGIQFQALATWVVSAALLVTLVVTDSASPSPQHTLQSVPFSTDVLWLLPASVFGFLFCPYLDLTFHRARLSSQTSSESRFAFGMGFGIFFFSMIVLTVLYAGPISALTDRDPATVANVGFWIAAFIALHMFTQFMFTTSVHRKELERKTKTFLGSYTWFEFCSFIAFAFGLFCGLRPDLPTSITSQLDMTSGEIVYRLFLTFYGLIFPTYVYLNVWDIRRRSIRRQTRRSLQVTVV--AIVLASPFFFMGFFVRDERFIPAGVAILL 396
BLAST of mRNA_L-digitata_M_contig100284.1.1 vs. uniprot
Match: A0A7X7U3J8_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7X7U3J8_9BACT) HSP 1 Score: 132 bits (333), Expect = 1.840e-32 Identity = 77/218 (35.32%), Postives = 121/218 (55.50%), Query Frame = 1
Query: 223 PNNAMGLFMLPISIFGFMLCPYLDVTFHHARQQLDTRARGRIGFTLGFGLMFALMIVLTTRYAPMVLDAMNGQMTNPTQTKWIGAVLLAHILFQWAFTVQVHLDQVKPLPIEKVPPYRMLIGI--ALGAGMVGFFAQNLPRFAGLEGGEIVYRSFLGAYGLVFPTYVLYRIVMARNGRKPLSIGAMWGAIIVATPMFWMGFMQGESVWLAPGIAIVLL 870
P+ + P+ FGF+LCPYLD+TFH AR + A GR+ F +GFG++F +I+ + YA + A++GQ + L ++ Q A+TV +H+ +V P+ + + LI + A GA +GF GL+ GE +YR F+G +GL FP YV ++ + L + A+ A++ A P+F+ GF+ G +V L PG+AIVLL
Sbjct: 132 PDPVAVAALAPVCAFGFLLCPYLDLTFHRARHRTSPAA-GRVAFGVGFGVLFLAVILFSYGYARPLAVAVDGQAPRGPGNAF-ALPLGFYMSLQVAYTVALHVVEVIPVAKAIIGRHLTLIAVVAAGGAAALGFVGNRGSLLYGLDAGEAIYRCFMGFFGLFFPAYVWLCMLRRSPSARTLRVYAV--AVVAALPLFFAGFVAGRTVLLVPGVAIVLL 345
BLAST of mRNA_L-digitata_M_contig100284.1.1 vs. uniprot
Match: UPI0019A543B6 (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=UPI0019A543B6) HSP 1 Score: 133 bits (334), Expect = 4.860e-32 Identity = 102/305 (33.44%), Postives = 151/305 (49.51%), Query Frame = 1
Query: 124 LATALWIFSFLVLISTFVL--PDLQPINDR----FHEQHPNNAMGLFMLPISIFGFMLCPYLDVTFHHARQQLDTRARGRIGFTLGFGLMFALMIVLTTRYAPMVLDAMNGQMTNPTQTKWIGAVLLAHILFQWAFTVQVHLDQVKPLPIEKVP---------------PYRMLIGIALGAGMVGFFAQNLPRFAGLEG----GEIVYRSFLGAYGLVFPTYVLYRIVMARNG----RKPLSIGAM--WG-AIIVATPMFWMGFMQGESVWLAPGIAIVLLV------AGIGVINRTQGVAGRSA 924
LA AL + + L+ + +L P+++P + R A L++ P+ IFGF LCPYLD+TFH AR+ L A+G + F+LGFGL F +I+LT YA L + + +W+ + AHI Q AFTV VHL +V L P P +L+ + + + + A + G GEI YR FL AYGL+FP YV ++ R+G R P + + W A+ +A P +WMGF++ ++VW+ PG+ IVLL + N + A RSA
Sbjct: 146 LAIALLAATAITLLVSQILTDPEVRPPDGRAAAVLAASRLPEADALWLAPVVIFGFALCPYLDITFHRARRSLRG-AQGPLAFSLGFGLFFLGLILLTAGYAGYFLWGVQ-------ELRWL---VFAHIFAQTAFTVGVHLREV--LGATNGPGDGDRDYSGWGCVFLPAALLVLVFVPLALPLLSTMPITGIAAVIGRPSLGEIGYRGFLAAYGLLFPAYVWLLMIPTRDGHSGTRGPQGVAKVRFWVLAMALAAPFYWMGFIERQTVWVLPGLLIVLLARLALPRGNVTPANAERSTAPRSA 437 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100284.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig100284.1.1 >prot_L-digitata_M_contig100284.1.1 ID=prot_L-digitata_M_contig100284.1.1|Name=mRNA_L-digitata_M_contig100284.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=305bp MALPMPQNASYGVLAAFIAFWLVTKRSSYFRRMPQLATALWIFSFLVLISback to top mRNA from alignment at L-digitata_M_contig100284:9..941- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig100284.1.1 ID=mRNA_L-digitata_M_contig100284.1.1|Name=mRNA_L-digitata_M_contig100284.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=933bp|location=Sequence derived from alignment at L-digitata_M_contig100284:9..941- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig100284:9..941- >mRNA_L-digitata_M_contig100284.1.1 ID=mRNA_L-digitata_M_contig100284.1.1|Name=mRNA_L-digitata_M_contig100284.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=915bp|location=Sequence derived from alignment at L-digitata_M_contig100284:9..941- (Laminaria digitata LdigPH10_18mv male)back to top |