mRNA_L-digitata_M_contig100284.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100284.1.1
Unique NamemRNA_L-digitata_M_contig100284.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100284.1.1 vs. uniprot
Match: A0A2D9CBT4_9BACT (Uncharacterized protein n=3 Tax=Phycisphaerae TaxID=666505 RepID=A0A2D9CBT4_9BACT)

HSP 1 Score: 511 bits (1316), Expect = 1.000e-179
Identity = 238/310 (76.77%), Postives = 275/310 (88.71%), Query Frame = 1
Query:    1 VFRYLRMALPMPQNASYGVLAAFIAFWLVTKRSSYFRRMPQLATALWIFSFLVLISTFVLPDLQPINDRFHEQHPNNAMGLFMLPISIFGFMLCPYLDVTFHHARQQLDTRARGRIGFTLGFGLMFALMIVLTTRYAPMVLDAMNGQMTNPTQTKWIGAVLLAHILFQWAFTVQVHLDQVKPLPIEKVPPYRMLIGIALGAGMVGFFAQNLPRFAGLEGGEIVYRSFLGAYGLVFPTYVLYRIVMARNGRKPLSIGAMWGAIIVATPMFWMGFMQGESVWLAPGIAIVLLVAGIGVINRTQGVAGRSASK 930
            +F+YLRM L M QNASYGVLAAFIAFWLVTKRSSYF+RMPQLAT LWIFS LVL++TFV PDL P+N RFHE HP++AMGLF+LPIS FGF+LCPYLDVTFHHARQQL ++ RGRIGF++GFGLMFALMIVLTTRYAPM++DA+NGQ  NPTQT WIGAVLLAHILFQW FTVQVHLD+VK +PI+ VPPY MLIG+AL AG++GFFA NLP  AGL GGEIVYR F+GAYGLVFPTYVLYR V+ARNG KP+S+ A+WGAI++ATPMFW+GFMQGESVWLAPG+ IVL++A IG++NR QGV G  A +
Sbjct:  103 IFQYLRMGLYMSQNASYGVLAAFIAFWLVTKRSSYFKRMPQLATVLWIFSALVLVATFVTPDLGPVNQRFHEAHPSSAMGLFLLPISTFGFLLCPYLDVTFHHARQQLGSKQRGRIGFSVGFGLMFALMIVLTTRYAPMLVDALNGQQANPTQTAWIGAVLLAHILFQWVFTVQVHLDRVKAMPIKSVPPYNMLIGVALLAGLIGFFATNLPTIAGLSGGEIVYRCFIGAYGLVFPTYVLYRAVLARNGTKPMSMFAVWGAIVLATPMFWLGFMQGESVWLAPGMGIVLMIAAIGLVNRKQGVTGSVAGQ 412          
BLAST of mRNA_L-digitata_M_contig100284.1.1 vs. uniprot
Match: A0A7Z9PZT3_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PZT3_9BACT)

HSP 1 Score: 268 bits (686), Expect = 9.150e-87
Identity = 124/163 (76.07%), Postives = 145/163 (88.96%), Query Frame = 1
Query:    1 VFRYLRMALPMPQNASYGVLAAFIAFWLVTKRSSYFRRMPQLATALWIFSFLVLISTFVLPDLQPINDRFHEQHPNNAMGLFMLPISIFGFMLCPYLDVTFHHARQQLDTRARGRIGFTLGFGLMFALMIVLTTRYAPMVLDAM-NGQMTNPTQTKWIGAVLL 486
            VF YLRMALPM QNASYG++AAFIAFWLVTKRS YF+RMPQL+  LW+ SFLVL+STFV PDL PI+DRFH+ HP+NAMGLF++P+S FGF+LCPYLD+TFHHARQQLDT+ RGRIGFT+GF +MFA MIVLTTRYAPM++DA+ NG + N TQT WIGAVLL
Sbjct:   68 VFEYLRMALPMTQNASYGLIAAFIAFWLVTKRSGYFKRMPQLSVVLWVLSFLVLVSTFVTPDLGPISDRFHDSHPSNAMGLFLIPLSTFGFLLCPYLDITFHHARQQLDTKQRGRIGFTIGFVIMFASMIVLTTRYAPMIIDALDNGTVANATQTPWIGAVLL 230          
BLAST of mRNA_L-digitata_M_contig100284.1.1 vs. uniprot
Match: A0A4P6PIS2_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium S94 TaxID=2488809 RepID=A0A4P6PIS2_9BACT)

HSP 1 Score: 223 bits (569), Expect = 6.220e-67
Identity = 122/293 (41.64%), Postives = 172/293 (58.70%), Query Frame = 1
Query:    1 VFRYLRMALPMPQNASYGVLAAFIAFWLVTKRSSYFRRMPQLATALWIFSFLVLISTFVLPDLQPINDRFHEQHPNNAMGLFMLPISIFGFMLCPYLDVTFHHARQQLDTRARGRIGFTLGFGLMFALMIVLTTRYAPMVLDAMNGQMTNPTQTKWIGAVLLAHILFQWAFTVQVHLDQVKPLPIEKVPPYRMLIGIALGAGMVGFFAQNLPRFAGLEGGEIVYRSFLGAYGLVFPTYVLYRIVMARNGRKPLSIGAMWGAIIVATPMFWMGFMQGESVWLAPGIAIVLLVAG 879
            +FR L   L +P     G    F AF L+   + +   + + A  L   S  VL+ TF    LQ  N    +    +A    MLP+  FGF+LCPYLDVTFHHARQ+L+T ++GR+GFT+GF L F  MI LTTRYA +    ++G+      +  +   +L HI+ QW FTV VHLD+++ LP        + + + + AGM+G F   LP + GL  GEIVYR F+ AYGL+FP Y+LYR+++ +      S   MW A++  +P FWMGF++ +SVWL PG+A  LL+AG
Sbjct:   98 LFRLLFRGLEIPGIWIAGGFGVFGAFVLLIGWALFRGSVQKSALVLLALSLTVLLGTFFSSGLQSANATLVQSAKPSAEPFRMLPVMFFGFLLCPYLDVTFHHARQKLETASKGRLGFTIGFVLFFPFMIFLTTRYAGIFNTVIDGERIIFPLSPLLAIGILLHIICQWFFTVTVHLDRIRTLPGIGARKKGLAV-LLIPAGMIGAFVPELPMYQGLTAGEIVYRLFMSAYGLIFPAYMLYRVIVRKKAAA--SPWVMWIAMLCTSPFFWMGFIERQSVWLLPGLA--LLIAG 385          
BLAST of mRNA_L-digitata_M_contig100284.1.1 vs. uniprot
Match: A0A3M2CUJ2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2CUJ2_9BACT)

HSP 1 Score: 189 bits (479), Expect = 1.050e-53
Identity = 115/301 (38.21%), Postives = 159/301 (52.82%), Query Frame = 1
Query:   10 YLRMALPMPQNASYGVLAAFIAFWLVTKRSSYFRRMPQLATALWIFSFLVLISTFVLPD-LQPINDRFHEQHPNNAMGLFMLPISIFGFMLCPYLDVTFHHARQQLDTRARGRIGFTLGFGLMFALMIVLTTRYAPMVLDAMNGQMTNPTQTKWIGAVLLAHILFQWAFTVQVHLDQVKPL---PIEKVPPYRML----IGIA------LGAGMVGFFAQNLPRFAGLEGGEIVYRSFLGAYGLVFPTYVLYRIVMARNGRKPLSIGAMW-GAIIVATPMFWMGFMQGESVWLAPGIAIVL 867
            +LR   P+P     G LA  +A+ +   R       P+ A  LW+    VL+S    P  L P      +   +    L+++P+ +FGFMLCPYLD+TF  AR+  D    GR+ F  GF ++F +MI LT  Y   VL  + G+   PT   W GA +L HI  QW FTV+VH +++      P+      RML     G++      +GAG+ G  A NL   AGL  GEI YR F+ AYGLVFP YV  R++     R+  S  A W GA ++A P FWMG ++ + +WLAPG+ I L
Sbjct:   72 FLRQVFPIPDTWIMGSLAVGVAWAISLGRVLRRGAGPRAALLLWLVGLGVLVSVLSSPGALGPGTAAMIDPPTHPGSALWLMPVCVFGFMLCPYLDLTFLLARRSTDGGRGGRVAFGFGFWVLFPVMIGLTVVYTGPVLAVLEGR-AEPTAAPWAGAAVLLHIFAQWIFTVRVHAERLTSPGVGPVSSEERGRMLWSDPFGVSTALVACIGAGLAGMAAPNLMPHAGLSAGEIGYRLFMAAYGLVFPVYVWGRMIP----RRRRSSHAGWVGACVLAAPFFWMGMIERQGIWLAPGMIIAL 367          
BLAST of mRNA_L-digitata_M_contig100284.1.1 vs. uniprot
Match: A0A5M4D738_9CYAN (Uncharacterized protein n=1 Tax=Cyanobacteria bacterium CYA TaxID=2484221 RepID=A0A5M4D738_9CYAN)

HSP 1 Score: 180 bits (456), Expect = 4.230e-50
Identity = 114/277 (41.16%), Postives = 154/277 (55.60%), Query Frame = 1
Query:  118 PQLATALWIFSFLVLISTFVLPDLQPINDRFHEQHPNNAMGLFMLPISIFGFMLCPYLDVTFHHARQQLDTRARGRIGFTLGFGLMFALMIVLTTRYAPMVLDAMNGQMTNPTQTKWIGAVLLAHILFQWAFTVQVHLDQVKPLPIEKVPPYRMLIGIALGAGMVGFFAQNLPRFAGLEGGEIVYRSFLGAYGLVFPTYVLYRIVMARNGRKPLS-------IGAMWGAIIVATPMFWMGFMQGESVWLAPGIAIVLLVAGIGVINRTQGVAGRSAS 927
            P L  +L +F  ++  +   LP        F +Q P  A+ L++ P+ +FGF LCPYLD TF  AR +L  R + R  F++GFGL F  MI+LT  YAPM+L  + G     T    +G  LLAH+L Q AFTV  H+   +     +  P  +  G  L A +VG   + LP  AGL+ GE+VYR F+G YGLVFPTYV   ++ AR G+ P         +     A+ +A PMFWMGF++   V+LAPG+AIVLL         T G AG+SAS
Sbjct:  143 PLLVLSLGVFGLVLARTGLTLP-------TFTQQRPEPAL-LWLAPVCVFGFALCPYLDRTFLTARAELPGR-QARAAFSIGFGLFFLAMILLTLAYAPMLLPLLGGT----TAPFVVGVALLAHLLLQAAFTVAAHVRCAE----SRGSPDALRWGALLVAALVGVLVRVLPGHAGLDAGEVVYRLFMGLYGLVFPTYVWLVVIPARRGQAPPGSPQRRRLVRVFAAAVGLALPMFWMGFIERREVFLAPGLAIVLLARLF-----TTG-AGKSAS 396          
BLAST of mRNA_L-digitata_M_contig100284.1.1 vs. uniprot
Match: A0A7V1LZJ7_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7V1LZJ7_9BACT)

HSP 1 Score: 166 bits (420), Expect = 9.800e-45
Identity = 100/257 (38.91%), Postives = 139/257 (54.09%), Query Frame = 1
Query:  121 QLATALWIFSFLVLISTFVLPDLQPINDRFHEQHPNNAMGLFMLPISIFGFMLCPYLDVTFHHARQQLDTRARGRIGFTLGFGLMFALMIVLTTRYAPMVLDAMNGQM-TNPTQTKWIGAVLLAHILFQWAFTVQVHLDQV--KPLPIEKVPPYRMLIGIALGAGMVGFFAQNLPRFAGLEGGEIVYRSFLGAYGLVFPTYVLYRIVMARNGR----KPLSIGAMWGAIIVATPMFWMGFMQGESVWLAPGIAIVLL 870
            ++A  +WI S  +L++  + P   P           +   L++ P SIFGF+LCPYLD+TFH ARQ   TR   +I F LGFG+ F  MIVLT  YA  ++   +G   T      WIG  L+AH+L Q  FTV  H  ++  KP+P   V    ++  +A GA  V      +PR   + GGEI YR FL  YGLVFPTYV   +V  R  R      +S+   +  II+A P F+ GF+  + + L PG+A++LL
Sbjct:  136 RMALVVWIISAGLLVALTLSPATTPSTVSIIADRSFSTDMLWLAPASIFGFLLCPYLDLTFHRARQGCATRTESKIAFGLGFGVFFFSMIVLTFLYAGPIVAMTDGDPETTAHVAPWIGVYLVAHLLIQLIFTVGAHSRELARKPVPDRWVFRGSVVFALAFGAAAVW-----VPRSFDMAGGEIGYRLFLSFYGLVFPTYVWLNMVDLRERRLAEPTAMSLRVTFWTIIIAAPFFFAGFILRQEIMLVPGVAMILL 387          
BLAST of mRNA_L-digitata_M_contig100284.1.1 vs. uniprot
Match: UPI00198ECBD2 (Uncharacterized protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=UPI00198ECBD2)

HSP 1 Score: 145 bits (366), Expect = 6.730e-37
Identity = 87/210 (41.43%), Postives = 120/210 (57.14%), Query Frame = 1
Query:  247 MLPISIFGFMLCPYLDVTFHHARQQLDTRARGRIGFTLGFGLMFALMIVLTTRYAPMVLDAMNGQMTNPTQTKWIGAVLLAHILFQWAFTVQVHLDQVKPLPIEKVPPYRMLIGIALGAGMVGFFAQNLPRFAGLEGGEIVYRSFLGAYGLVFPTYVLYRIVMARNGRKPL--SIGAMWGAIIVATPMFWMGFMQGESVWLAPGIAIVLL 870
            + P+ IFGF+LCPYLD+TFH ARQ L   A  R  F++GFG++F LMIV +  YA  +  A+    T P     + A+ L H++ Q AFT+  H     P   EK+   R ++   L + +V F A N+  F  L G E+VYR F+G YGL FP YV   ++  R   KP    +    GA+++A PMFWMGF+     WL PG+ +VLL
Sbjct:  191 LAPVCIFGFLLCPYLDITFHAARQALPVAAARR-AFSVGFGVLFLLMIVFSAIYAQPLAQALKHGHTLPAIA--VMAIGL-HMIGQIAFTMAAHARYHSP---EKL---RFIVLSFLTSFVVIFIAYNVYGFTKLAGDEMVYRMFMGFYGLAFPAYVWLCMIPGRGRLKPTRWQLTVFAGAVLIALPMFWMGFILQRLTWLLPGVGMVLL 390          
BLAST of mRNA_L-digitata_M_contig100284.1.1 vs. uniprot
Match: A0A3M8FT06_9BACT (Uncharacterized protein n=1 Tax=Phycisphaera sp. TaxID=2030824 RepID=A0A3M8FT06_9BACT)

HSP 1 Score: 139 bits (351), Expect = 1.270e-34
Identity = 96/286 (33.57%), Postives = 137/286 (47.90%), Query Frame = 1
Query:   52 GVLAAFIAFWLVTKRSSYFRRMPQLATALWIFSFLVLISTFVLPDLQPINDRFHEQHPNNAMGLFMLPISIFGFMLCPYLDVTFHHARQQLDTRARGRIGFTLGFGLMFALMIVLTTRYA-PMVLDAMNGQMTNPTQTKWIGAVLLAHILFQWAFTVQVH---LDQVKPLPIEKVPPYRMLIGIALGAGMVGFFAQNLPRFA----GLEGGEIVYRSFLGAYGLVFPTYV------LYRIVMARNGRKPLSIGAMWGAIIVATPMFWMGFMQGESVWLAPGIAIVL 867
            GV A  IA   V      FR +   A A W+ S  +L++  V     P      +  P +   L++LP S+FGF+ CPYLD+TFH AR    T +  R  F +GFG+ F  MIVLT  YA P+         T      WI A +  H+  Q+ FT  VH   L++     +     +     IA   G+      +LP        +  GEIVYR FL  YGL+FPTYV      + R  + R  R+ L +  +  AI++A+P F+MGF   +  ++  G+AI+L
Sbjct:  113 GVGATTIAVLSVGLLGRGFRGIQFQALATWVVSAALLVTLVVTDSASPSPQHTLQSVPFSTDVLWLLPASVFGFLFCPYLDLTFHRARLSSQTSSESRFAFGMGFGIFFFSMIVLTVLYAGPISALTDRDPATVANVGFWIAAFIALHMFTQFMFTTSVHRKELERKTKTFLGSYTWFEFCSFIAFAFGLFCGLRPDLPTSITSQLDMTSGEIVYRLFLTFYGLIFPTYVYLNVWDIRRRSIRRQTRRSLQVTVV--AIVLASPFFFMGFFVRDERFIPAGVAILL 396          
BLAST of mRNA_L-digitata_M_contig100284.1.1 vs. uniprot
Match: A0A7X7U3J8_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7X7U3J8_9BACT)

HSP 1 Score: 132 bits (333), Expect = 1.840e-32
Identity = 77/218 (35.32%), Postives = 121/218 (55.50%), Query Frame = 1
Query:  223 PNNAMGLFMLPISIFGFMLCPYLDVTFHHARQQLDTRARGRIGFTLGFGLMFALMIVLTTRYAPMVLDAMNGQMTNPTQTKWIGAVLLAHILFQWAFTVQVHLDQVKPLPIEKVPPYRMLIGI--ALGAGMVGFFAQNLPRFAGLEGGEIVYRSFLGAYGLVFPTYVLYRIVMARNGRKPLSIGAMWGAIIVATPMFWMGFMQGESVWLAPGIAIVLL 870
            P+      + P+  FGF+LCPYLD+TFH AR +    A GR+ F +GFG++F  +I+ +  YA  +  A++GQ        +    L  ++  Q A+TV +H+ +V P+    +  +  LI +  A GA  +GF         GL+ GE +YR F+G +GL FP YV   ++      + L + A+  A++ A P+F+ GF+ G +V L PG+AIVLL
Sbjct:  132 PDPVAVAALAPVCAFGFLLCPYLDLTFHRARHRTSPAA-GRVAFGVGFGVLFLAVILFSYGYARPLAVAVDGQAPRGPGNAF-ALPLGFYMSLQVAYTVALHVVEVIPVAKAIIGRHLTLIAVVAAGGAAALGFVGNRGSLLYGLDAGEAIYRCFMGFFGLFFPAYVWLCMLRRSPSARTLRVYAV--AVVAALPLFFAGFVAGRTVLLVPGVAIVLL 345          
BLAST of mRNA_L-digitata_M_contig100284.1.1 vs. uniprot
Match: UPI0019A543B6 (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=UPI0019A543B6)

HSP 1 Score: 133 bits (334), Expect = 4.860e-32
Identity = 102/305 (33.44%), Postives = 151/305 (49.51%), Query Frame = 1
Query:  124 LATALWIFSFLVLISTFVL--PDLQPINDR----FHEQHPNNAMGLFMLPISIFGFMLCPYLDVTFHHARQQLDTRARGRIGFTLGFGLMFALMIVLTTRYAPMVLDAMNGQMTNPTQTKWIGAVLLAHILFQWAFTVQVHLDQVKPLPIEKVP---------------PYRMLIGIALGAGMVGFFAQNLPRFAGLEG----GEIVYRSFLGAYGLVFPTYVLYRIVMARNG----RKPLSIGAM--WG-AIIVATPMFWMGFMQGESVWLAPGIAIVLLV------AGIGVINRTQGVAGRSA 924
            LA AL   + + L+ + +L  P+++P + R            A  L++ P+ IFGF LCPYLD+TFH AR+ L   A+G + F+LGFGL F  +I+LT  YA   L  +        + +W+   + AHI  Q AFTV VHL +V  L     P               P  +L+ + +   +       +   A + G    GEI YR FL AYGL+FP YV   ++  R+G    R P  +  +  W  A+ +A P +WMGF++ ++VW+ PG+ IVLL         +   N  +  A RSA
Sbjct:  146 LAIALLAATAITLLVSQILTDPEVRPPDGRAAAVLAASRLPEADALWLAPVVIFGFALCPYLDITFHRARRSLRG-AQGPLAFSLGFGLFFLGLILLTAGYAGYFLWGVQ-------ELRWL---VFAHIFAQTAFTVGVHLREV--LGATNGPGDGDRDYSGWGCVFLPAALLVLVFVPLALPLLSTMPITGIAAVIGRPSLGEIGYRGFLAAYGLLFPAYVWLLMIPTRDGHSGTRGPQGVAKVRFWVLAMALAAPFYWMGFIERQTVWVLPGLLIVLLARLALPRGNVTPANAERSTAPRSA 437          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100284.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D9CBT4_9BACT1.000e-17976.77Uncharacterized protein n=3 Tax=Phycisphaerae TaxI... [more]
A0A7Z9PZT3_9BACT9.150e-8776.07Uncharacterized protein (Fragment) n=1 Tax=Phycisp... [more]
A0A4P6PIS2_9BACT6.220e-6741.64Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
A0A3M2CUJ2_9BACT1.050e-5338.21Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A5M4D738_9CYAN4.230e-5041.16Uncharacterized protein n=1 Tax=Cyanobacteria bact... [more]
A0A7V1LZJ7_9BACT9.800e-4538.91Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
UPI00198ECBD26.730e-3741.43Uncharacterized protein n=1 Tax=Anaerolineae bacte... [more]
A0A3M8FT06_9BACT1.270e-3433.57Uncharacterized protein n=1 Tax=Phycisphaera sp. T... [more]
A0A7X7U3J8_9BACT1.840e-3235.32Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
UPI0019A543B64.860e-3233.44Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100284contigL-digitata_M_contig100284:9..941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1142394.PSMK_03820
Model size933
Max annot lvl2|Bacteria
Hectar predicted targeting categorysignal anchor
Exons1
Evalue4.08e-16
EggNOG OGs2EVR7@1|root,33P56@2|Bacteria
Cds size915
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406605.4900622-CDS-L-digitata_M_contig100284:8..9231682406605.4900622-CDS-L-digitata_M_contig100284:8..923Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100284 9..923 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406605.5033038-UTR-L-digitata_M_contig100284:923..9411682406605.5033038-UTR-L-digitata_M_contig100284:923..941Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig100284 924..941 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100284.1.1prot_L-digitata_M_contig100284.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100284 9..923 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100284.1.1

>prot_L-digitata_M_contig100284.1.1 ID=prot_L-digitata_M_contig100284.1.1|Name=mRNA_L-digitata_M_contig100284.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=305bp
MALPMPQNASYGVLAAFIAFWLVTKRSSYFRRMPQLATALWIFSFLVLIS
TFVLPDLQPINDRFHEQHPNNAMGLFMLPISIFGFMLCPYLDVTFHHARQ
QLDTRARGRIGFTLGFGLMFALMIVLTTRYAPMVLDAMNGQMTNPTQTKW
IGAVLLAHILFQWAFTVQVHLDQVKPLPIEKVPPYRMLIGIALGAGMVGF
FAQNLPRFAGLEGGEIVYRSFLGAYGLVFPTYVLYRIVMARNGRKPLSIG
AMWGAIIVATPMFWMGFMQGESVWLAPGIAIVLLVAGIGVINRTQGVAGR
SASK*
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mRNA from alignment at L-digitata_M_contig100284:9..941-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100284.1.1 ID=mRNA_L-digitata_M_contig100284.1.1|Name=mRNA_L-digitata_M_contig100284.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=933bp|location=Sequence derived from alignment at L-digitata_M_contig100284:9..941- (Laminaria digitata LdigPH10_18mv male)
GTCTTCCGCTACCTGCGTATGGCCCTGCCGATGCCTCAAAACGCGAGCTA TGGCGTGCTGGCCGCGTTTATCGCCTTCTGGCTCGTCACCAAACGCTCCA GCTACTTTCGGAGGATGCCTCAACTCGCCACCGCGCTGTGGATCTTCAGC TTCCTCGTGCTCATTAGCACATTCGTGCTGCCGGATCTTCAGCCCATCAA CGACCGCTTTCATGAGCAGCACCCCAACAACGCCATGGGCCTCTTCATGC TGCCCATCAGCATCTTCGGCTTCATGCTCTGCCCCTACCTCGATGTCACC TTCCATCATGCCCGCCAGCAACTCGATACTCGCGCCCGCGGGCGCATCGG CTTCACGCTGGGCTTCGGGCTGATGTTCGCGCTGATGATCGTTCTGACCA CCCGCTACGCCCCCATGGTCCTCGATGCCATGAACGGACAGATGACCAAC CCGACGCAGACCAAGTGGATCGGCGCGGTCCTGCTCGCCCACATCCTCTT CCAATGGGCGTTCACCGTGCAGGTGCACCTTGATCAAGTCAAACCGCTCC CGATCGAGAAGGTGCCCCCGTACCGGATGCTCATCGGCATCGCGCTGGGC GCAGGGATGGTGGGCTTCTTCGCCCAGAACCTGCCTCGGTTCGCCGGGCT CGAGGGTGGTGAGATCGTCTACCGCAGCTTCCTGGGCGCGTACGGGCTGG TCTTCCCGACCTATGTGCTTTACCGCATCGTGATGGCCCGCAATGGACGC AAGCCCCTGAGCATCGGTGCGATGTGGGGCGCGATCATCGTGGCCACACC CATGTTCTGGATGGGCTTCATGCAGGGCGAATCCGTTTGGCTGGCGCCCG GCATCGCGATTGTGCTACTTGTCGCCGGCATCGGCGTGATCAATCGCACG CAGGGCGTCGCCGGCCGCAGTGCGAGCAAGTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig100284:9..941-

>mRNA_L-digitata_M_contig100284.1.1 ID=mRNA_L-digitata_M_contig100284.1.1|Name=mRNA_L-digitata_M_contig100284.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=915bp|location=Sequence derived from alignment at L-digitata_M_contig100284:9..941- (Laminaria digitata LdigPH10_18mv male)
ATGGCCCTGCCGATGCCTCAAAACGCGAGCTATGGCGTGCTGGCCGCGTT
TATCGCCTTCTGGCTCGTCACCAAACGCTCCAGCTACTTTCGGAGGATGC
CTCAACTCGCCACCGCGCTGTGGATCTTCAGCTTCCTCGTGCTCATTAGC
ACATTCGTGCTGCCGGATCTTCAGCCCATCAACGACCGCTTTCATGAGCA
GCACCCCAACAACGCCATGGGCCTCTTCATGCTGCCCATCAGCATCTTCG
GCTTCATGCTCTGCCCCTACCTCGATGTCACCTTCCATCATGCCCGCCAG
CAACTCGATACTCGCGCCCGCGGGCGCATCGGCTTCACGCTGGGCTTCGG
GCTGATGTTCGCGCTGATGATCGTTCTGACCACCCGCTACGCCCCCATGG
TCCTCGATGCCATGAACGGACAGATGACCAACCCGACGCAGACCAAGTGG
ATCGGCGCGGTCCTGCTCGCCCACATCCTCTTCCAATGGGCGTTCACCGT
GCAGGTGCACCTTGATCAAGTCAAACCGCTCCCGATCGAGAAGGTGCCCC
CGTACCGGATGCTCATCGGCATCGCGCTGGGCGCAGGGATGGTGGGCTTC
TTCGCCCAGAACCTGCCTCGGTTCGCCGGGCTCGAGGGTGGTGAGATCGT
CTACCGCAGCTTCCTGGGCGCGTACGGGCTGGTCTTCCCGACCTATGTGC
TTTACCGCATCGTGATGGCCCGCAATGGACGCAAGCCCCTGAGCATCGGT
GCGATGTGGGGCGCGATCATCGTGGCCACACCCATGTTCTGGATGGGCTT
CATGCAGGGCGAATCCGTTTGGCTGGCGCCCGGCATCGCGATTGTGCTAC
TTGTCGCCGGCATCGGCGTGATCAATCGCACGCAGGGCGTCGCCGGCCGC
AGTGCGAGCAAGTGA
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