mRNA_L-digitata_M_contig100254.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100254.1.1
Unique NamemRNA_L-digitata_M_contig100254.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100254.1.1 vs. uniprot
Match: A0A6H5KJ55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ55_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 6.390e-20
Identity = 39/45 (86.67%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 RRGWFYHKAVWLILPGGKKVVLTARVYKPLFGQAEGELVLLEMPQ 135
            +RGWFYHKAVW++LPGGKKVVLTARV+KP+FGQAEGELVLLEMP+
Sbjct:  749 KRGWFYHKAVWVVLPGGKKVVLTARVHKPIFGQAEGELVLLEMPR 793
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BLAST of mRNA_L-digitata_M_contig100254.1.1 vs. uniprot
Match: D7FTN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN5_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 6.410e-20
Identity = 39/45 (86.67%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 RRGWFYHKAVWLILPGGKKVVLTARVYKPLFGQAEGELVLLEMPQ 135
            +RGWFYHKAVW++LPGGKKVVLTARV+KP+FGQAEGELVLLEMP+
Sbjct:  407 KRGWFYHKAVWVVLPGGKKVVLTARVHKPIFGQAEGELVLLEMPR 451
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BLAST of mRNA_L-digitata_M_contig100254.1.1 vs. uniprot
Match: A0A836CJ47_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ47_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 5.590e-11
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 RRGWFYHKAVWLILPGGKKVVLTARVYKPLFGQAEGELVLLEMP 132
            ++GWFYHKAVW+ +P G++ VL AR  KPLFG   GELVL +MP
Sbjct:   61 KKGWFYHKAVWVNMPDGRRGVLAARATKPLFGGGRGELVLFDMP 104
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100254.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KJ55_9PHAE6.390e-2086.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTN5_ECTSI6.410e-2086.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CJ47_9STRA5.590e-1161.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100254contigL-digitata_M_contig100254:596..730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog529818.AMSG_07146T0
PFAMsFG-GAP,VCBS
Model size135
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue8.8e-06
EggNOG OGs2AV1E@1|root,2RZVB@2759|Eukaryota
Cds size135
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406605.3371196-CDS-L-digitata_M_contig100254:595..7301682406605.3371196-CDS-L-digitata_M_contig100254:595..730Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100254 596..730 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100254.1.1prot_L-digitata_M_contig100254.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100254 596..730 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100254.1.1

>prot_L-digitata_M_contig100254.1.1 ID=prot_L-digitata_M_contig100254.1.1|Name=mRNA_L-digitata_M_contig100254.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=45bp
RRGWFYHKAVWLILPGGKKVVLTARVYKPLFGQAEGELVLLEMPQ
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mRNA from alignment at L-digitata_M_contig100254:596..730-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100254.1.1 ID=mRNA_L-digitata_M_contig100254.1.1|Name=mRNA_L-digitata_M_contig100254.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=135bp|location=Sequence derived from alignment at L-digitata_M_contig100254:596..730- (Laminaria digitata LdigPH10_18mv male)
CGAAGGGGCTGGTTTTACCACAAGGCAGTGTGGCTTATCCTGCCGGGGGG
CAAGAAGGTCGTGCTGACGGCCAGGGTCTACAAGCCTCTGTTCGGCCAGG
CGGAAGGGGAGCTCGTGCTGCTCGAGATGCCACAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100254:596..730-

>mRNA_L-digitata_M_contig100254.1.1 ID=mRNA_L-digitata_M_contig100254.1.1|Name=mRNA_L-digitata_M_contig100254.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=135bp|location=Sequence derived from alignment at L-digitata_M_contig100254:596..730- (Laminaria digitata LdigPH10_18mv male)
CGAAGGGGCTGGTTTTACCACAAGGCAGTGTGGCTTATCCTGCCGGGGGG
CAAGAAGGTCGTGCTGACGGCCAGGGTCTACAAGCCTCTGTTCGGCCAGG
CGGAAGGGGAGCTCGTGCTGCTCGAGATGCCACAG
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