mRNA_L-digitata_M_contig100245.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100245.1.1
Unique NamemRNA_L-digitata_M_contig100245.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100245.1.1 vs. uniprot
Match: A0A534RLU0_9DELT (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534RLU0_9DELT)

HSP 1 Score: 52.8 bits (125), Expect = 1.480e-7
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 1
Query:  112 MPGKLEGKVALVTGASSGIGKATAIVFAKEGAKV 213
            M G+L GKVALVTG SSGIG+ATA++FA+EGAKV
Sbjct:    1 MAGRLAGKVALVTGGSSGIGRATALIFAREGAKV 34          
BLAST of mRNA_L-digitata_M_contig100245.1.1 vs. uniprot
Match: A0A1Z4V9B4_9CYAN (Short-chain dehydrogenase/reductase SDR n=1 Tax=Dolichospermum compactum NIES-806 TaxID=1973481 RepID=A0A1Z4V9B4_9CYAN)

HSP 1 Score: 51.2 bits (121), Expect = 3.570e-7
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 1
Query:  112 MPGKLEGKVALVTGASSGIGKATAIVFAKEGAKV 213
            M  KLEGKVA++TGASSGIGKATAI  A EGAKV
Sbjct:    1 MVSKLEGKVAIITGASSGIGKATAIALAAEGAKV 34          
BLAST of mRNA_L-digitata_M_contig100245.1.1 vs. uniprot
Match: A0A846H9M7_9CYAN (SDR family oxidoreductase n=1 Tax=Hassallia byssoidea VB512170 TaxID=1304833 RepID=A0A846H9M7_9CYAN)

HSP 1 Score: 54.7 bits (130), Expect = 4.240e-7
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1
Query:  112 MPGKLEGKVALVTGASSGIGKATAIVFAKEGAKV 213
            M GKL+GKVA+VTG SSGIG+ATA+ FAKEGAKV
Sbjct:    1 MAGKLDGKVAIVTGGSSGIGRATAVTFAKEGAKV 34          
BLAST of mRNA_L-digitata_M_contig100245.1.1 vs. uniprot
Match: A0A2X3K5C9_9BACT (Uncharacterized oxidoreductase TM_0325 n=1 Tax=Candidatus Bipolaricaulis anaerobius TaxID=2026885 RepID=A0A2X3K5C9_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 9.660e-7
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1
Query:  112 MPGKLEGKVALVTGASSGIGKATAIVFAKEGAKV 213
            M GK  GKVALVTGA++GIGKATA+ FA+EGAKV
Sbjct:    1 MAGKFSGKVALVTGAAAGIGKATALAFAREGAKV 34          
BLAST of mRNA_L-digitata_M_contig100245.1.1 vs. uniprot
Match: UPI0016867E0C (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Oscillatoria sp. FACHB-1407 TaxID=2692847 RepID=UPI0016867E0C)

HSP 1 Score: 50.1 bits (118), Expect = 1.090e-6
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 1
Query:  112 MPGKLEGKVALVTGASSGIGKATAIVFAKEGAKV 213
            M  KL+GKVALVTGASSGIGKATA+  AKEGA V
Sbjct:    1 MTQKLQGKVALVTGASSGIGKATALALAKEGATV 34          
BLAST of mRNA_L-digitata_M_contig100245.1.1 vs. uniprot
Match: UPI0019C83BE5 (SDR family oxidoreductase n=1 Tax=Rhizobacter sp. TaxID=1909292 RepID=UPI0019C83BE5)

HSP 1 Score: 53.5 bits (127), Expect = 1.220e-6
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 1
Query:   97 IPNLVMPGKLEGKVALVTGASSGIGKATAIVFAKEGAKV 213
            IP +   GKLE KVA++TGA SGIGKATA++FAKEGA +
Sbjct:   31 IPKVYTSGKLENKVAIITGADSGIGKATALLFAKEGADI 69          
BLAST of mRNA_L-digitata_M_contig100245.1.1 vs. uniprot
Match: V8QUJ2_9BURK (Uncharacterized protein n=1 Tax=Advenella kashmirensis W13003 TaxID=1424334 RepID=V8QUJ2_9BURK)

HSP 1 Score: 52.0 bits (123), Expect = 1.250e-6
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 1
Query:  100 PNLVMPGKLEGKVALVTGASSGIGKATAIVFAKEGAKV 213
            P+    GKLEGKVAL+TG  SGIG+AT I FAKEGAK+
Sbjct:   29 PHYKSAGKLEGKVALITGGDSGIGRATTIAFAKEGAKL 66          
BLAST of mRNA_L-digitata_M_contig100245.1.1 vs. uniprot
Match: UPI000A68E3F3 (SDR family NAD(P)-dependent oxidoreductase n=3 Tax=Cyanobacteria TaxID=1117 RepID=UPI000A68E3F3)

HSP 1 Score: 53.5 bits (127), Expect = 1.280e-6
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1
Query:  112 MPGKLEGKVALVTGASSGIGKATAIVFAKEGAKV 213
            MPGKL GKVA+VTGASSGIG+ATA++ A EGAKV
Sbjct:   35 MPGKLTGKVAIVTGASSGIGEATAVLLATEGAKV 68          
BLAST of mRNA_L-digitata_M_contig100245.1.1 vs. uniprot
Match: A0A2E7ZWN4_9GAMM (Uncharacterized protein n=10 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E7ZWN4_9GAMM)

HSP 1 Score: 53.5 bits (127), Expect = 1.310e-6
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1
Query:   61 TRATAKNTRSRQIPNLVMPGKLEGKVALVTGASSGIGKATAIVFAKEGAKV 213
            +R +   +RSR +  + MPG+LEGKVA+VTG +SGIG+AT + F  EGA V
Sbjct:   18 SRTSGPPSRSRCLRRIPMPGRLEGKVAIVTGGASGIGRATVVRFLAEGAHV 68          
BLAST of mRNA_L-digitata_M_contig100245.1.1 vs. uniprot
Match: A0A6A8APV6_9ARCH (Glucose 1-dehydrogenase n=1 Tax=archaeon TaxID=1906665 RepID=A0A6A8APV6_9ARCH)

HSP 1 Score: 53.1 bits (126), Expect = 1.740e-6
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 1
Query:  112 MPGKLEGKVALVTGASSGIGKATAIVFAKEGAKV 213
            MPGKLEG+VAL+TG +SGIG+ATA +F KEGAKV
Sbjct:    1 MPGKLEGRVALITGGASGIGEATARLFVKEGAKV 34          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100245.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A534RLU0_9DELT1.480e-776.47SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A1Z4V9B4_9CYAN3.570e-779.41Short-chain dehydrogenase/reductase SDR n=1 Tax=Do... [more]
A0A846H9M7_9CYAN4.240e-779.41SDR family oxidoreductase n=1 Tax=Hassallia byssoi... [more]
A0A2X3K5C9_9BACT9.660e-776.47Uncharacterized oxidoreductase TM_0325 n=1 Tax=Can... [more]
UPI0016867E0C1.090e-679.41SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
UPI0019C83BE51.220e-666.67SDR family oxidoreductase n=1 Tax=Rhizobacter sp. ... [more]
V8QUJ2_9BURK1.250e-668.42Uncharacterized protein n=1 Tax=Advenella kashmire... [more]
UPI000A68E3F31.280e-679.41SDR family NAD(P)-dependent oxidoreductase n=3 Tax... [more]
A0A2E7ZWN4_9GAMM1.310e-652.94Uncharacterized protein n=10 Tax=Gammaproteobacter... [more]
A0A6A8APV6_9ARCH1.740e-676.47Glucose 1-dehydrogenase n=1 Tax=archaeon TaxID=190... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100245contigL-digitata_M_contig100245:510..722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1211777.BN77_p2100007
Preferred nameMA20_43565
PFAMsadh_short
Model size213
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue5.57e-07
EggNOG OGsCOG4221@1|root,COG4221@2|Bacteria,1MUF8@1224|Proteobacteria,2TTNG@28211|Alphaproteobacteria,4BA25@82115|Rhizobiaceae
DescriptionBelongs to the short-chain dehydrogenases reductases (SDR) family
Cds size213
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406605.3061068-CDS-L-digitata_M_contig100245:509..7221682406605.3061068-CDS-L-digitata_M_contig100245:509..722Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100245 510..722 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100245.1.1prot_L-digitata_M_contig100245.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100245 510..722 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100245.1.1

>prot_L-digitata_M_contig100245.1.1 ID=prot_L-digitata_M_contig100245.1.1|Name=mRNA_L-digitata_M_contig100245.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=71bp
FSWSRCLALASFVCTGHFLVTRATAKNTRSRQIPNLVMPGKLEGKVALVT
GASSGIGKATAIVFAKEGAKV
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mRNA from alignment at L-digitata_M_contig100245:510..722-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100245.1.1 ID=mRNA_L-digitata_M_contig100245.1.1|Name=mRNA_L-digitata_M_contig100245.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=213bp|location=Sequence derived from alignment at L-digitata_M_contig100245:510..722- (Laminaria digitata LdigPH10_18mv male)
TTCTCGTGGTCACGTTGTCTCGCCCTTGCGTCATTTGTCTGCACTGGCCA CTTCCTGGTAACGAGAGCGACCGCAAAAAATACTCGCTCGCGTCAAATCC CCAATCTAGTCATGCCTGGCAAGCTAGAAGGCAAGGTGGCGCTCGTGACT GGAGCATCATCAGGCATCGGAAAGGCTACAGCGATCGTCTTCGCCAAGGA AGGGGCAAAGGTA
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Coding sequence (CDS) from alignment at L-digitata_M_contig100245:510..722-

>mRNA_L-digitata_M_contig100245.1.1 ID=mRNA_L-digitata_M_contig100245.1.1|Name=mRNA_L-digitata_M_contig100245.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=213bp|location=Sequence derived from alignment at L-digitata_M_contig100245:510..722- (Laminaria digitata LdigPH10_18mv male)
TTCTCGTGGTCACGTTGTCTCGCCCTTGCGTCATTTGTCTGCACTGGCCA
CTTCCTGGTAACGAGAGCGACCGCAAAAAATACTCGCTCGCGTCAAATCC
CCAATCTAGTCATGCCTGGCAAGCTAGAAGGCAAGGTGGCGCTCGTGACT
GGAGCATCATCAGGCATCGGAAAGGCTACAGCGATCGTCTTCGCCAAGGA
AGGGGCAAAGGTA
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