mRNA_L-digitata_M_contig100245.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig100245.1.1 vs. uniprot
Match: A0A534RLU0_9DELT (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534RLU0_9DELT) HSP 1 Score: 52.8 bits (125), Expect = 1.480e-7 Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 1
Query: 112 MPGKLEGKVALVTGASSGIGKATAIVFAKEGAKV 213
M G+L GKVALVTG SSGIG+ATA++FA+EGAKV
Sbjct: 1 MAGRLAGKVALVTGGSSGIGRATALIFAREGAKV 34
BLAST of mRNA_L-digitata_M_contig100245.1.1 vs. uniprot
Match: A0A1Z4V9B4_9CYAN (Short-chain dehydrogenase/reductase SDR n=1 Tax=Dolichospermum compactum NIES-806 TaxID=1973481 RepID=A0A1Z4V9B4_9CYAN) HSP 1 Score: 51.2 bits (121), Expect = 3.570e-7 Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 1
Query: 112 MPGKLEGKVALVTGASSGIGKATAIVFAKEGAKV 213
M KLEGKVA++TGASSGIGKATAI A EGAKV
Sbjct: 1 MVSKLEGKVAIITGASSGIGKATAIALAAEGAKV 34
BLAST of mRNA_L-digitata_M_contig100245.1.1 vs. uniprot
Match: A0A846H9M7_9CYAN (SDR family oxidoreductase n=1 Tax=Hassallia byssoidea VB512170 TaxID=1304833 RepID=A0A846H9M7_9CYAN) HSP 1 Score: 54.7 bits (130), Expect = 4.240e-7 Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1
Query: 112 MPGKLEGKVALVTGASSGIGKATAIVFAKEGAKV 213
M GKL+GKVA+VTG SSGIG+ATA+ FAKEGAKV
Sbjct: 1 MAGKLDGKVAIVTGGSSGIGRATAVTFAKEGAKV 34
BLAST of mRNA_L-digitata_M_contig100245.1.1 vs. uniprot
Match: A0A2X3K5C9_9BACT (Uncharacterized oxidoreductase TM_0325 n=1 Tax=Candidatus Bipolaricaulis anaerobius TaxID=2026885 RepID=A0A2X3K5C9_9BACT) HSP 1 Score: 52.0 bits (123), Expect = 9.660e-7 Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1
Query: 112 MPGKLEGKVALVTGASSGIGKATAIVFAKEGAKV 213
M GK GKVALVTGA++GIGKATA+ FA+EGAKV
Sbjct: 1 MAGKFSGKVALVTGAAAGIGKATALAFAREGAKV 34
BLAST of mRNA_L-digitata_M_contig100245.1.1 vs. uniprot
Match: UPI0016867E0C (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Oscillatoria sp. FACHB-1407 TaxID=2692847 RepID=UPI0016867E0C) HSP 1 Score: 50.1 bits (118), Expect = 1.090e-6 Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 1
Query: 112 MPGKLEGKVALVTGASSGIGKATAIVFAKEGAKV 213
M KL+GKVALVTGASSGIGKATA+ AKEGA V
Sbjct: 1 MTQKLQGKVALVTGASSGIGKATALALAKEGATV 34
BLAST of mRNA_L-digitata_M_contig100245.1.1 vs. uniprot
Match: UPI0019C83BE5 (SDR family oxidoreductase n=1 Tax=Rhizobacter sp. TaxID=1909292 RepID=UPI0019C83BE5) HSP 1 Score: 53.5 bits (127), Expect = 1.220e-6 Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 1
Query: 97 IPNLVMPGKLEGKVALVTGASSGIGKATAIVFAKEGAKV 213
IP + GKLE KVA++TGA SGIGKATA++FAKEGA +
Sbjct: 31 IPKVYTSGKLENKVAIITGADSGIGKATALLFAKEGADI 69
BLAST of mRNA_L-digitata_M_contig100245.1.1 vs. uniprot
Match: V8QUJ2_9BURK (Uncharacterized protein n=1 Tax=Advenella kashmirensis W13003 TaxID=1424334 RepID=V8QUJ2_9BURK) HSP 1 Score: 52.0 bits (123), Expect = 1.250e-6 Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 1
Query: 100 PNLVMPGKLEGKVALVTGASSGIGKATAIVFAKEGAKV 213
P+ GKLEGKVAL+TG SGIG+AT I FAKEGAK+
Sbjct: 29 PHYKSAGKLEGKVALITGGDSGIGRATTIAFAKEGAKL 66
BLAST of mRNA_L-digitata_M_contig100245.1.1 vs. uniprot
Match: UPI000A68E3F3 (SDR family NAD(P)-dependent oxidoreductase n=3 Tax=Cyanobacteria TaxID=1117 RepID=UPI000A68E3F3) HSP 1 Score: 53.5 bits (127), Expect = 1.280e-6 Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1
Query: 112 MPGKLEGKVALVTGASSGIGKATAIVFAKEGAKV 213
MPGKL GKVA+VTGASSGIG+ATA++ A EGAKV
Sbjct: 35 MPGKLTGKVAIVTGASSGIGEATAVLLATEGAKV 68
BLAST of mRNA_L-digitata_M_contig100245.1.1 vs. uniprot
Match: A0A2E7ZWN4_9GAMM (Uncharacterized protein n=10 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E7ZWN4_9GAMM) HSP 1 Score: 53.5 bits (127), Expect = 1.310e-6 Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1
Query: 61 TRATAKNTRSRQIPNLVMPGKLEGKVALVTGASSGIGKATAIVFAKEGAKV 213
+R + +RSR + + MPG+LEGKVA+VTG +SGIG+AT + F EGA V
Sbjct: 18 SRTSGPPSRSRCLRRIPMPGRLEGKVAIVTGGASGIGRATVVRFLAEGAHV 68
BLAST of mRNA_L-digitata_M_contig100245.1.1 vs. uniprot
Match: A0A6A8APV6_9ARCH (Glucose 1-dehydrogenase n=1 Tax=archaeon TaxID=1906665 RepID=A0A6A8APV6_9ARCH) HSP 1 Score: 53.1 bits (126), Expect = 1.740e-6 Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 1
Query: 112 MPGKLEGKVALVTGASSGIGKATAIVFAKEGAKV 213
MPGKLEG+VAL+TG +SGIG+ATA +F KEGAKV
Sbjct: 1 MPGKLEGRVALITGGASGIGEATARLFVKEGAKV 34 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100245.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig100245.1.1 >prot_L-digitata_M_contig100245.1.1 ID=prot_L-digitata_M_contig100245.1.1|Name=mRNA_L-digitata_M_contig100245.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=71bp FSWSRCLALASFVCTGHFLVTRATAKNTRSRQIPNLVMPGKLEGKVALVTback to top mRNA from alignment at L-digitata_M_contig100245:510..722- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig100245.1.1 ID=mRNA_L-digitata_M_contig100245.1.1|Name=mRNA_L-digitata_M_contig100245.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=213bp|location=Sequence derived from alignment at L-digitata_M_contig100245:510..722- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig100245:510..722- >mRNA_L-digitata_M_contig100245.1.1 ID=mRNA_L-digitata_M_contig100245.1.1|Name=mRNA_L-digitata_M_contig100245.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=213bp|location=Sequence derived from alignment at L-digitata_M_contig100245:510..722- (Laminaria digitata LdigPH10_18mv male)back to top |