mRNA_L-digitata_M_contig100212.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100212.1.1
Unique NamemRNA_L-digitata_M_contig100212.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig100212.1.1 vs. uniprot
Match: A0A6H5KKL2_9PHAE (MEP23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL2_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 3.550e-16
Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    7 QVFSWSRSKGTPDNGASDGSSPRSFISIVSEMTHSSDTCVGAADDDAGEGRMDSESLNSR 186
            ++ SWS     PDNGA DG + RSFIS VSEMTH SDTC GAADDDAGE RMDS+S + R
Sbjct:   49 KLTSWSVGNRAPDNGAYDGLNARSFISAVSEMTHPSDTCDGAADDDAGEARMDSKSRSRR 108
[Close]
BLAST of mRNA_L-digitata_M_contig100212.1.1 vs. uniprot
Match: A0A6H5L834_9PHAE (MEP8 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L834_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 4.350e-16
Identity = 39/53 (73.58%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    7 QVFSWSRSKGTPDNGASDGSSPRSFISIVSEMTHSSDTCVGAADDDAGEGRMD 165
            QV SWS S   PD GA DGS+PRS+IS VSEMTH SDTC GAADDDAGE R+D
Sbjct:    8 QVTSWSVSDKEPDAGAYDGSNPRSYISAVSEMTHPSDTCDGAADDDAGEARLD 60
[Close]
BLAST of mRNA_L-digitata_M_contig100212.1.1 vs. uniprot
Match: A0A6H5L1Q9_9PHAE (MEP7c protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Q9_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 5.460e-15
Identity = 38/53 (71.70%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:   19 WSRSKGTPDNGASDGSSPRSFISIVSEMTHSSDTCVGAADDDAGEGRMDSESL 177
            W +    PDNGA DG + RSFIS VSEMTH SDTC GAADDDAGE RMDSE L
Sbjct:    6 WYQVNRAPDNGAYDGLNARSFISAVSEMTHPSDTCDGAADDDAGEARMDSELL 58
[Close]
BLAST of mRNA_L-digitata_M_contig100212.1.1 vs. uniprot
Match: D7G1G1_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G1_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 4.080e-14
Identity = 38/55 (69.09%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 NPQVFSWSRSKGTPDNGASDGSSPRSFISIVSEMTHSSDTCVGAADDDAGEGRMD 165
            N +V SWS S   PD GA DGS+PRS++S VSEMTH SDTC GAADDDAGE R+D
Sbjct:  145 NTKVTSWSVSNKEPDAGAYDGSNPRSYMSAVSEMTHPSDTCDGAADDDAGEARLD 199
[Close]
BLAST of mRNA_L-digitata_M_contig100212.1.1 vs. uniprot
Match: D7G1G2_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G2_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 4.120e-13
Identity = 37/52 (71.15%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   10 VFSWSRSKGTPDNGASDGSSPRSFISIVSEMTHSSDTCVGAADDDAGEGRMD 165
            + SWS     PDNGA DG + RSFIS VSEMTH SDTC GAADDDAGE RMD
Sbjct:   28 LTSWSVGNRAPDNGAYDGLNARSFISAVSEMTHPSDTCDGAADDDAGEARMD 79
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100212.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KKL2_9PHAE3.550e-1666.67MEP23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5L834_9PHAE4.350e-1673.58MEP8 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5L1Q9_9PHAE5.460e-1571.70MEP7c protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7G1G1_ECTSI4.080e-1469.09Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G1G2_ECTSI4.120e-1371.15Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100212contigL-digitata_M_contig100212:114..311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size198
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionMannuronan C-5-epimerase
Ec32 orthologEc-07_000890.1
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406605.0887818-CDS-L-digitata_M_contig100212:113..3111682406605.0887818-CDS-L-digitata_M_contig100212:113..311Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100212 114..311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100212.1.1prot_L-digitata_M_contig100212.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100212 114..311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100212.1.1

>prot_L-digitata_M_contig100212.1.1 ID=prot_L-digitata_M_contig100212.1.1|Name=mRNA_L-digitata_M_contig100212.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=66bp
NPQVFSWSRSKGTPDNGASDGSSPRSFISIVSEMTHSSDTCVGAADDDAG
EGRMDSESLNSRNNH*
back to top

mRNA from alignment at L-digitata_M_contig100212:114..311+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100212.1.1 ID=mRNA_L-digitata_M_contig100212.1.1|Name=mRNA_L-digitata_M_contig100212.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=198bp|location=Sequence derived from alignment at L-digitata_M_contig100212:114..311+ (Laminaria digitata LdigPH10_18mv male)
AACCCCCAGGTTTTCTCGTGGAGCCGATCTAAGGGGACACCCGACAACGG
CGCGAGCGACGGTAGCAGCCCTCGCTCCTTTATTTCCATCGTCAGCGAGA
TGACCCACTCGTCGGACACATGCGTTGGGGCCGCGGACGATGATGCGGGC
GAGGGGAGGATGGACAGTGAGTCACTCAACTCCAGGAACAACCACTAA
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig100212:114..311+

>mRNA_L-digitata_M_contig100212.1.1 ID=mRNA_L-digitata_M_contig100212.1.1|Name=mRNA_L-digitata_M_contig100212.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=198bp|location=Sequence derived from alignment at L-digitata_M_contig100212:114..311+ (Laminaria digitata LdigPH10_18mv male)
AACCCCCAGGTTTTCTCGTGGAGCCGATCTAAGGGGACACCCGACAACGG
CGCGAGCGACGGTAGCAGCCCTCGCTCCTTTATTTCCATCGTCAGCGAGA
TGACCCACTCGTCGGACACATGCGTTGGGGCCGCGGACGATGATGCGGGC
GAGGGGAGGATGGACAGTGAGTCACTCAACTCCAGGAACAACCACTAA
back to top