mRNA_L-digitata_M_contig100211.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100211.2.1
Unique NamemRNA_L-digitata_M_contig100211.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100211.2.1 vs. uniprot
Match: A0A2D8G1W2_9PROT (Phosphohydrolase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G1W2_9PROT)

HSP 1 Score: 235 bits (599), Expect = 1.970e-77
Identity = 108/142 (76.06%), Postives = 122/142 (85.92%), Query Frame = 1
Query:    1 MSPREYPDRPFCGVGIVCFKGDRVLLVKRAKPPIRWEWSIPGGGQELGETTRETALRELKEETGIDARLIGLVDVVDSVSKDADGSIEFHYTLVDFAAEWVAGEPVADDDVSDARWAPLSEIDTLGLWSETVRIIREAEKLR 426
            M+ REYP RP CGVG+VC K + VLLVKRAKPP+RWEWSIPGGGQELGETTR  ALRELKEETG+DA LIGLVDV+D+V +D  G I+FHYTLVDFAA W AGEP+ADDDVSDA WAPLSEI+  GLWSETVR+IR+A  +R
Sbjct:    1 MTDREYPXRPICGVGVVCLKDESVLLVKRAKPPVRWEWSIPGGGQELGETTRAAALRELKEETGVDAELIGLVDVIDTVREDEKGRIQFHYTLVDFAAVWKAGEPIADDDVSDAEWAPLSEIENXGLWSETVRVIRKAVNMR 142          
BLAST of mRNA_L-digitata_M_contig100211.2.1 vs. uniprot
Match: A0A3D2BP26_9PROT (Phosphohydrolase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D2BP26_9PROT)

HSP 1 Score: 228 bits (581), Expect = 1.020e-74
Identity = 103/142 (72.54%), Postives = 123/142 (86.62%), Query Frame = 1
Query:    1 MSPREYPDRPFCGVGIVCFKGDRVLLVKRAKPPIRWEWSIPGGGQELGETTRETALRELKEETGIDARLIGLVDVVDSVSKDADGSIEFHYTLVDFAAEWVAGEPVADDDVSDARWAPLSEIDTLGLWSETVRIIREAEKLR 426
            MS REYPD+P CGVG+VC K D+VLLVKRAKPPI W+WSIPGGGQELGETTRE ALRELKEETG+DA LIGL+DV+D+V +D +G I+FHYTLVDFAA W +GE +ADDDVSDA+W  LS+++  GLWSET+R+IREA  +R
Sbjct:    1 MSSREYPDKPVCGVGVVCLKDDQVLLVKRAKPPITWQWSIPGGGQELGETTREAALRELKEETGVDAELIGLIDVIDTVREDEEGRIQFHYTLVDFAAIWTSGEALADDDVSDAQWVHLSDLENKGLWSETIRVIREAVIMR 142          
BLAST of mRNA_L-digitata_M_contig100211.2.1 vs. uniprot
Match: A0A2S6Q7M4_9PROT (RNA pyrophosphohydrolase n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6Q7M4_9PROT)

HSP 1 Score: 225 bits (574), Expect = 1.190e-73
Identity = 100/143 (69.93%), Postives = 121/143 (84.62%), Query Frame = 1
Query:    1 MSPREYPDRPFCGVGIVCFKGDRVLLVKRAKPPIRWEWSIPGGGQELGETTRETALRELKEETGIDARLIGLVDVVDSVSKDADGSIEFHYTLVDFAAEWVAGEPVADDDVSDARWAPLSEIDTLGLWSETVRIIREAEKLRG 429
            M+PREYP +P CGVG+VC + D+VLLVKRAK PI W+WSIPGGGQELGETTR  ALREL+EETG+DA LIGL+DV+D++ +D  G I++HYTLVDF A W +GEPVADDDVSDARW PLSEI+   LW ET+R+IR+A K+RG
Sbjct:    1 MNPREYPTQPVCGVGVVCLRDDKVLLVKRAKAPITWQWSIPGGGQELGETTRTAALRELQEETGVDAELIGLIDVIDTIREDDSGRIQYHYTLVDFVAVWTSGEPVADDDVSDARWVPLSEIEKYDLWFETIRVIRKAVKIRG 143          
BLAST of mRNA_L-digitata_M_contig100211.2.1 vs. uniprot
Match: UPI001A962DA1 (NUDIX hydrolase n=2 Tax=Roseomonas haemaphysalidis TaxID=2768162 RepID=UPI001A962DA1)

HSP 1 Score: 179 bits (454), Expect = 2.440e-55
Identity = 82/140 (58.57%), Postives = 103/140 (73.57%), Query Frame = 1
Query:    1 MSPREYPDRPFCGVGIVCFKGDRVLLVKRAKPPIRWEWSIPGGGQELGETTRETALRELKEETGIDARLIGLVDVVDSVSKDADGSIEFHYTLVDFAAEWVAGEPVADDDVSDARWAPLSEIDTLGLWSETVRIIREAEK 420
            MS REYPDRP+ G+G+V FKGD VLLV+R KPP   EWS+PGG Q LGET   TA REL+EE GI+A  + L  VVD++ ++ DG   FHYT+VDFAAEW++GEPVA DDV+DARW    ++  LGLW E +R+I E  +
Sbjct:    1 MSSREYPDRPWIGIGVVVFKGDAVLLVRRGKPPRMGEWSVPGGAQALGETVEATARRELREEAGIEAGPLVLAAVVDALDREPDGRARFHYTIVDFAAEWLSGEPVAGDDVTDARWFRPEDLPALGLWDEALRVIAEGRR 140          
BLAST of mRNA_L-digitata_M_contig100211.2.1 vs. uniprot
Match: A0A6N7FHB3_9PROT (NUDIX domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7FHB3_9PROT)

HSP 1 Score: 175 bits (443), Expect = 1.580e-53
Identity = 80/141 (56.74%), Postives = 104/141 (73.76%), Query Frame = 1
Query:    4 SPREYPDRPFCGVGIVCFKGDRVLLVKRAKPPIRWEWSIPGGGQELGETTRETALRELKEETGIDARLIGLVDVVDSVSKDADGSIEFHYTLVDFAAEWVAGEPVADDDVSDARWAPLSEIDTLGLWSETVRIIREAEKLR 426
            +PR YPDRPF GVG+V F+GD VLL +R K P R++WSIPGG QELGET  E  +RE+ EETG+   ++GLVDVVD++S+D DG ++FHYTLVD  AEW AGE VADDDV+  +W  L  +D + +   T  +IREA++ R
Sbjct:    7 NPRLYPDRPFVGVGVVIFRGDEVLLAQRGKMPRRYDWSIPGGAQELGETVFEAGMREILEETGLTVEILGLVDVVDAISRDEDGRVQFHYTLVDLVAEWRAGEAVADDDVAALQWVDLGALDGVEMREVTREVIREADRKR 147          
BLAST of mRNA_L-digitata_M_contig100211.2.1 vs. uniprot
Match: A0A6C1QSQ0_9SPIO (NUDIX domain-containing protein n=1 Tax=Spirochaetaceae bacterium TaxID=1898206 RepID=A0A6C1QSQ0_9SPIO)

HSP 1 Score: 175 bits (443), Expect = 1.690e-53
Identity = 77/141 (54.61%), Postives = 104/141 (73.76%), Query Frame = 1
Query:    4 SPREYPDRPFCGVGIVCFKGDRVLLVKRAKPPIRWEWSIPGGGQELGETTRETALRELKEETGIDARLIGLVDVVDSVSKDADGSIEFHYTLVDFAAEWVAGEPVADDDVSDARWAPLSEIDTLGLWSETVRIIREAEKLR 426
            + REYP RPF GVG+V  + D VLL++R  PP   EWS+PGGGQ +GET RETA+RE+ EETGI       ++V+D++ +D DG +++HYTLVDF AEW +GE VA DD   A W PLS+++ LGLWS+T+ +IREA++ R
Sbjct:   17 TSREYPTRPFIGVGVVVLRDDSVLLIRRGNPPRAGEWSLPGGGQHVGETVRETAVREVSEETGITIGEPQFLEVIDAIFRDPDGRVQYHYTLVDFWAEWASGEAVAADDAQHAEWVPLSDLEELGLWSKTIEVIREADRRR 157          
BLAST of mRNA_L-digitata_M_contig100211.2.1 vs. uniprot
Match: A0A6A7KMU7_9PROT (NUDIX domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6A7KMU7_9PROT)

HSP 1 Score: 173 bits (439), Expect = 3.510e-53
Identity = 80/133 (60.15%), Postives = 99/133 (74.44%), Query Frame = 1
Query:   10 REYPDRPFCGVGIVCFKGDRVLLVKRAKPPIRWEWSIPGGGQELGETTRETALRELKEETGIDARLIGLVDVVDSVSKDADGSIEFHYTLVDFAAEWVAGEPVADDDVSDARWAPLSEIDTLGLWSETVRIIR 408
            REYPDRPF GVG+V ++GD VLL++R K P    WS+PGG QELGET RETA RE++EET ++  + GL+DVVD V KD +G ++FHYTLVDF AEWV+GE VA  D + ARW  L +ID   LW ET R+IR
Sbjct:    3 REYPDRPFVGVGVVVWRGDEVLLIERGKGPRTGGWSLPGGKQELGETVRETAHREIREETAVEIEITGLLDVVDMVRKDGEGRVQFHYTLVDFTAEWVSGEAVAGTDAAAARWVRLEDIDQYRLWDETRRVIR 135          
BLAST of mRNA_L-digitata_M_contig100211.2.1 vs. uniprot
Match: A0A3A9JC77_9PROT (NUDIX domain-containing protein n=3 Tax=Roseomonas TaxID=125216 RepID=A0A3A9JC77_9PROT)

HSP 1 Score: 173 bits (439), Expect = 4.390e-53
Identity = 78/140 (55.71%), Postives = 102/140 (72.86%), Query Frame = 1
Query:    1 MSPREYPDRPFCGVGIVCFKGDRVLLVKRAKPPIRWEWSIPGGGQELGETTRETALRELKEETGIDARLIGLVDVVDSVSKDADGSIEFHYTLVDFAAEWVAGEPVADDDVSDARWAPLSEIDTLGLWSETVRIIREAEK 420
            MS REYPDRP+ G+G+V F+G+ VLLV+R KPP   EWS+PGG Q LGE   +TA REL+EE GI+   + L  VVD++  DA G   FHYT++DFA EW++GEPVA DDV++ARW   +E+  LGLWSE +R+I E  +
Sbjct:    1 MSSREYPDRPWIGIGLVAFRGEDVLLVRRGKPPRMGEWSVPGGAQALGEPAEDTARRELREEAGIEVGPLVLAGVVDALDSDAAGRTRFHYTIIDFAGEWISGEPVAGDDVTEARWFSPAELPGLGLWSEALRVIAEGRR 140          
BLAST of mRNA_L-digitata_M_contig100211.2.1 vs. uniprot
Match: A0A353LQ32_9PROT (Phosphohydrolase n=6 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LQ32_9PROT)

HSP 1 Score: 173 bits (439), Expect = 7.510e-53
Identity = 79/142 (55.63%), Postives = 102/142 (71.83%), Query Frame = 1
Query:    4 SPREYPDRPFCGVGIVCFKGDRVLLVKRAKPPIRWEWSIPGGGQELGETTRETALRELKEETGIDARLIGLVDVVDSVSKDADGSIEFHYTLVDFAAEWVAGEPVADDDVSDARWAPLSEIDTLGLWSETVRIIREAEKLRG 429
             PR++P RP+ GVG+V FK D+VLLV+RAKPP    WSIPGG QELGET  +  +RE+ EETGI   + GL+D++D +  + DG I  HYTL+D+ A W+AGEP A DDVSDARW PL ++    LWSET+R+I E+   RG
Sbjct:    7 EPRDFPTRPWVGVGVVIFKDDKVLLVRRAKPPRAGSWSIPGGMQELGETAAQAGIREVCEETGITVAIDGLIDIIDVIVPEDDGRIRTHYTLIDYHAHWLAGEPQAADDVSDARWVPLDKLADYRLWSETLRVINESATARG 148          
BLAST of mRNA_L-digitata_M_contig100211.2.1 vs. uniprot
Match: A0A845BKD5_9PROT (NUDIX domain-containing protein n=1 Tax=Roseomonas coralli TaxID=2545983 RepID=A0A845BKD5_9PROT)

HSP 1 Score: 172 bits (437), Expect = 7.540e-53
Identity = 79/143 (55.24%), Postives = 101/143 (70.63%), Query Frame = 1
Query:    1 MSPREYPDRPFCGVGIVCFKGDRVLLVKRAKPPIRWEWSIPGGGQELGETTRETALRELKEETGIDARLIGLVDVVDSVSKDADGSIEFHYTLVDFAAEWVAGEPVADDDVSDARWAPLSEIDTLGLWSETVRIIREAEKLRG 429
            MS REYPDRP+ G+G++ F+G+ VLLV+R+KPP + EWSIPGG Q LGET    A REL EE GI+   + L  VVD++S DA+G   FHYT++DFA  W  GEPVA DDVS+ARW   +E+  LGLW+E +R I E  +  G
Sbjct:    1 MSTREYPDRPWIGIGVIAFRGEDVLLVRRSKPPRQGEWSIPGGAQHLGETAEAAARRELLEEAGIEVGPLMLAVVVDALSHDAEGRARFHYTIIDFAGRWAGGEPVAGDDVSEARWFSPAELPALGLWAEAIRAIEEGRRRLG 143          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100211.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8G1W2_9PROT1.970e-7776.06Phosphohydrolase n=1 Tax=Alphaproteobacteria bacte... [more]
A0A3D2BP26_9PROT1.020e-7472.54Phosphohydrolase n=1 Tax=Rhodospirillaceae bacteri... [more]
A0A2S6Q7M4_9PROT1.190e-7369.93RNA pyrophosphohydrolase n=1 Tax=Alphaproteobacter... [more]
UPI001A962DA12.440e-5558.57NUDIX hydrolase n=2 Tax=Roseomonas haemaphysalidis... [more]
A0A6N7FHB3_9PROT1.580e-5356.74NUDIX domain-containing protein n=1 Tax=Alphaprote... [more]
A0A6C1QSQ0_9SPIO1.690e-5354.61NUDIX domain-containing protein n=1 Tax=Spirochaet... [more]
A0A6A7KMU7_9PROT3.510e-5360.15NUDIX domain-containing protein n=1 Tax=Alphaprote... [more]
A0A3A9JC77_9PROT4.390e-5355.71NUDIX domain-containing protein n=3 Tax=Roseomonas... [more]
A0A353LQ32_9PROT7.510e-5355.63Phosphohydrolase n=6 Tax=Alphaproteobacteria bacte... [more]
A0A845BKD5_9PROT7.540e-5355.24NUDIX domain-containing protein n=1 Tax=Roseomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100211contigL-digitata_M_contig100211:460..894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1054213.HMPREF9946_03529
PFAMsNUDIX
Model size435
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.25e-51
EggNOG OGsCOG1051@1|root,COG1051@2|Bacteria,1N1KH@1224|Proteobacteria,2UDD1@28211|Alphaproteobacteria,2JT81@204441|Rhodospirillales
Ec32 ortholog descriptionNUDIX hydrolase domain-like
Ec32 orthologEc-11_006020.1
DescriptionBelongs to the Nudix hydrolase family
Cds size435
COG categoryF
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406605.0656958-CDS-L-digitata_M_contig100211:459..8941682406605.0656958-CDS-L-digitata_M_contig100211:459..894Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100211 460..894 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100211.2.1prot_L-digitata_M_contig100211.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100211 460..894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100211.2.1

>prot_L-digitata_M_contig100211.2.1 ID=prot_L-digitata_M_contig100211.2.1|Name=mRNA_L-digitata_M_contig100211.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=145bp
MSPREYPDRPFCGVGIVCFKGDRVLLVKRAKPPIRWEWSIPGGGQELGET
TRETALRELKEETGIDARLIGLVDVVDSVSKDADGSIEFHYTLVDFAAEW
VAGEPVADDDVSDARWAPLSEIDTLGLWSETVRIIREAEKLRGT*
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mRNA from alignment at L-digitata_M_contig100211:460..894+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100211.2.1 ID=mRNA_L-digitata_M_contig100211.2.1|Name=mRNA_L-digitata_M_contig100211.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=435bp|location=Sequence derived from alignment at L-digitata_M_contig100211:460..894+ (Laminaria digitata LdigPH10_18mv male)
ATGAGTCCGCGCGAATATCCTGACCGGCCGTTCTGCGGCGTCGGCATTGT GTGTTTCAAAGGCGACCGGGTGCTTCTGGTCAAACGCGCGAAACCTCCCA TCAGGTGGGAATGGTCGATCCCCGGCGGCGGTCAGGAATTGGGCGAGACC ACGCGCGAGACCGCGCTCCGCGAACTGAAGGAAGAAACCGGTATCGATGC CCGTCTGATCGGGCTGGTCGATGTTGTCGACAGCGTCAGCAAAGATGCCG ACGGGAGCATAGAGTTTCACTACACGCTGGTCGATTTCGCTGCCGAGTGG GTGGCGGGCGAGCCGGTGGCGGATGACGACGTATCGGACGCACGCTGGGC GCCGCTATCGGAAATCGATACGCTGGGTCTTTGGTCCGAAACGGTCCGGA TCATTCGTGAGGCGGAGAAACTGCGGGGGACGTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig100211:460..894+

>mRNA_L-digitata_M_contig100211.2.1 ID=mRNA_L-digitata_M_contig100211.2.1|Name=mRNA_L-digitata_M_contig100211.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=435bp|location=Sequence derived from alignment at L-digitata_M_contig100211:460..894+ (Laminaria digitata LdigPH10_18mv male)
ATGAGTCCGCGCGAATATCCTGACCGGCCGTTCTGCGGCGTCGGCATTGT
GTGTTTCAAAGGCGACCGGGTGCTTCTGGTCAAACGCGCGAAACCTCCCA
TCAGGTGGGAATGGTCGATCCCCGGCGGCGGTCAGGAATTGGGCGAGACC
ACGCGCGAGACCGCGCTCCGCGAACTGAAGGAAGAAACCGGTATCGATGC
CCGTCTGATCGGGCTGGTCGATGTTGTCGACAGCGTCAGCAAAGATGCCG
ACGGGAGCATAGAGTTTCACTACACGCTGGTCGATTTCGCTGCCGAGTGG
GTGGCGGGCGAGCCGGTGGCGGATGACGACGTATCGGACGCACGCTGGGC
GCCGCTATCGGAAATCGATACGCTGGGTCTTTGGTCCGAAACGGTCCGGA
TCATTCGTGAGGCGGAGAAACTGCGGGGGACGTGA
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