mRNA_L-digitata_M_contig100211.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100211.1.1
Unique NamemRNA_L-digitata_M_contig100211.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100211.1.1 vs. uniprot
Match: A0A3D2BP66_9PROT (MFS transporter n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D2BP66_9PROT)

HSP 1 Score: 229 bits (583), Expect = 3.030e-71
Identity = 104/148 (70.27%), Postives = 121/148 (81.76%), Query Frame = 1
Query:    1 FVCVLSVGFLAERLQRRGVPPVVPAAIGIALSICIQALFAAGWTDYPVLLCVLFGYFGATGTLAYAVLNQHFPQNLTGRVNTAQNMLSFIAAFAVQWLVGVIIGAYPSPGEGLYSADGHQAALIVFVCIEIAGFLYFLWPRRKGDGLP 444
            FV VLS+G +A+RLQ+ GVP +VPA  GI LS+ +Q +FAA WTDYP +LC+LFGYFG+T TLAYAVLNQ FPQ LTGRVNTAQNML+FIAAF  QWLVG+IIG YPSPG+GLYS DGHQ AL V + IE+AGF+YFLWPR   D  P
Sbjct:  279 FVGVLSIGLVAQRLQKLGVPTIVPAVAGIGLSLVVQVMFAAAWTDYPAVLCLLFGYFGSTSTLAYAVLNQKFPQKLTGRVNTAQNMLTFIAAFTTQWLVGIIIGLYPSPGDGLYSTDGHQMALTVLIIIELAGFIYFLWPRNTPDPPP 426          
BLAST of mRNA_L-digitata_M_contig100211.1.1 vs. uniprot
Match: A0A2S6Q789_9PROT (Putative sulfoacetate transporter SauU n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6Q789_9PROT)

HSP 1 Score: 228 bits (580), Expect = 8.320e-71
Identity = 103/145 (71.03%), Postives = 119/145 (82.07%), Query Frame = 1
Query:    1 FVCVLSVGFLAERLQRRGVPPVVPAAIGIALSICIQALFAAGWTDYPVLLCVLFGYFGATGTLAYAVLNQHFPQNLTGRVNTAQNMLSFIAAFAVQWLVGVIIGAYPSPGEGLYSADGHQAALIVFVCIEIAGFLYFLWPRRKGD 435
            FV VLS+G +AER Q  GVP VVPA  GIA+S+ +Q LFAA WTDYP +LC+LFGYFG++ TLAYAVLNQ FP  LTGRVNTAQNML+FIAAFA QWLVGV IG YP+PGEGLYSADGHQ AL + + +E+AGF+YFLWPR   D
Sbjct:  278 FVGVLSIGLIAERAQNLGVPTVVPAVAGIAMSLIVQVLFAAAWTDYPAILCLLFGYFGSSSTLAYAVLNQKFPHRLTGRVNTAQNMLTFIAAFATQWLVGVTIGLYPAPGEGLYSADGHQVALAILIAVEVAGFIYFLWPRNTPD 422          
BLAST of mRNA_L-digitata_M_contig100211.1.1 vs. uniprot
Match: A0A2D8G238_9PROT (MFS transporter n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G238_9PROT)

HSP 1 Score: 192 bits (489), Expect = 8.040e-57
Identity = 86/139 (61.87%), Postives = 104/139 (74.82%), Query Frame = 1
Query:   10 VLSVGFLAERLQRRGVPPVVPAAIGIALSICIQALFAAGWTDYPVLLCVLFGYFGATGTLAYAVLNQHFPQNLTGRVNTAQNMLSFIAAFAVQWLVGVIIGAYPSPGEGLYSADGHQAALIVFVCIEIAGFLYFLWPRR 426
            VLS+G  AE LQR G+ PVVP  IG  LSI +Q +FA  WTDYP L C LFGYFG+T TL YAVLNQ FP  L GRVNTAQNML FI +F++QW+ GV IG +P+P EGLYSA GHQ A+  F+ +E+ G ++FLWPR+
Sbjct:  320 VLSIGVFAELLQRLGIQPVVPLIIGTILSIIVQGMFALAWTDYPSLXCFLFGYFGSTSTLVYAVLNQKFPNELAGRVNTAQNMLIFITSFSIQWVAGVXIGLFPAPXEGLYSAXGHQMAIFXFISLEVLGVIFFLWPRK 458          
BLAST of mRNA_L-digitata_M_contig100211.1.1 vs. uniprot
Match: A0A2E8XP38_9PROT (MFS transporter n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XP38_9PROT)

HSP 1 Score: 133 bits (334), Expect = 2.440e-34
Identity = 62/143 (43.36%), Postives = 93/143 (65.03%), Query Frame = 1
Query:   13 LSVGFLAERLQRRGVPPVVPAAIGIALSICIQALFAAGWTDYPVLLCVLFGYFGATGTLAYAVLNQHFPQNLTGRVNTAQNMLSFIAAFAVQWLVGVIIGAYPSPGEGLYSADGHQAALIVFVCIEIAGFLYFLWPRRKGDGL 441
            L +GF AERL RRG+ P+V A +G+ L I +Q +  AGW D PVLL ++FG  G TG + +AV++  FP +L GR +TA N++ F AAFA+QW +G +I  +P+  +G Y+A G+QAA  + + ++I  F + L  R +   L
Sbjct:  276 LIIGFAAERLDRRGIAPIVTAGVGMGLFILVQFVVMAGWADSPVLLWLVFGATGTTGVVCFAVISHAFPADLAGRASTALNLMVFGAAFALQWGMGEVINIWPTGADGSYAAAGYQAAFGIALALQIVAFAWMLIRRPQAPAL 418          
BLAST of mRNA_L-digitata_M_contig100211.1.1 vs. uniprot
Match: A0A433HKR2_9GAMM (MFS transporter n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A433HKR2_9GAMM)

HSP 1 Score: 128 bits (321), Expect = 1.950e-32
Identity = 65/144 (45.14%), Postives = 89/144 (61.81%), Query Frame = 1
Query:   13 LSVGFLAERLQRRGVPPVVPAAIGIALSICIQALFAAGWTDYPVLLCVLFGYFGATGTLAYAVLNQHFPQNLTGRVNTAQNMLSFIAAFAVQWLVGVIIGAYPSPGEGLYSADGHQAALIVFVCIEIAGFLYFLWPRRKGDGLP 444
            LS+G L  RL R  VPP+  A + + + I IQA  AAG+T  P+LL + FG+FG   TL+YA+L+Q FP  L GRVNTA N+L FIAAF +QW +G +IG +P    G Y+  G+ A L + V ++I   ++F W    G   P
Sbjct:  277 LSLGTLTYRLNRLEVPPMAVAVVSMVIFIGIQAALAAGYTGTPLLLWIAFGFFGTASTLSYAILSQAFPPGLAGRVNTAFNLLVFIAAFVMQWGLGAVIGLWPRTAAGGYAPVGYSAGLGLAVALQITALVWF-WCAGAGSRQP 419          
BLAST of mRNA_L-digitata_M_contig100211.1.1 vs. uniprot
Match: A0A2E3K384_9PROT (MFS transporter n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E3K384_9PROT)

HSP 1 Score: 126 bits (317), Expect = 6.810e-32
Identity = 64/141 (45.39%), Postives = 86/141 (60.99%), Query Frame = 1
Query:    1 FVCVLSVGFLAERLQRRGVPPVVPAAIGIALSICIQALFAAGWTDYPVLLCVLFGYFGATGTLAYAVLNQHFPQNLTGRVNTAQNMLSFIAAFAVQWLVGVIIGAYPSPGEGLYSADGHQAALIVFVCIEIAGFLYFLWPR 423
            FV V+ +GFLAERLQ+  + P+    +G+A SI IQ  F   +     +L        ++  L Y+VL Q FPQ LTGRVNTAQNML+F+AAF  QWL+GVII  +P      Y ++ H  A +V + IE   FLYF+WP+
Sbjct:  266 FVGVIGIGFLAERLQKYDIKPIAIVCLGVAGSIGIQTCFIFDFFYSKRVLXXXXXXXXSSTLLVYSVLTQRFPQRLTGRVNTAQNMLTFVAAFISQWLIGVIINYWPKLENLGYPSEAHITAFVVMIVIETLAFLYFVWPQ 406          
BLAST of mRNA_L-digitata_M_contig100211.1.1 vs. uniprot
Match: A0A523PRQ4_9PROT (MFS transporter n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523PRQ4_9PROT)

HSP 1 Score: 124 bits (311), Expect = 5.640e-31
Identity = 60/144 (41.67%), Postives = 89/144 (61.81%), Query Frame = 1
Query:   22 GFLAERLQRRGVPPVVPAAIGIALSICIQALFAAGWTDYPVLLCVLFGYFGATGTLAYAVLNQHFPQNLTGRVNTAQNMLSFIAAFAVQWLVGVIIGAYPSPGEGLYSADGHQAALIVFVCIEIAGFLYFLWP------RRKGD 435
            G +AERL RRG+ P+  A IG+ +S+ +QA+   GW +  + L +LFG+FG T  + YAVL+Q FP  L GRV T  N+L F  AFA QW +GV+I  +P+   G Y    +QAAL + + +++AG +++L        RR+ D
Sbjct:  277 GAVAERLSRRGIQPMTVAGIGMVVSLLMQAMLMLGWRNMALPLWMLFGFFGTTSIIPYAVLSQSFPAPLVGRVITGLNLLVFTTAFACQWGIGVLINLWPTTSTGGYPPPAYQAALAMMLALQVAGLIWYLVSAGRRPVRRRSD 420          
BLAST of mRNA_L-digitata_M_contig100211.1.1 vs. uniprot
Match: UPI001C84C908 (MFS transporter n=1 Tax=Desulfuromonas versatilis TaxID=2802975 RepID=UPI001C84C908)

HSP 1 Score: 122 bits (307), Expect = 1.810e-30
Identity = 58/139 (41.73%), Postives = 87/139 (62.59%), Query Frame = 1
Query:   13 LSVGFLAERLQRRGVPPVVPAAIGIALSICIQALFAAGWTDYPVLLCVLFGYFGATGTLAYAVLNQHFPQNLTGRVNTAQNMLSFIAAFAVQWLVGVIIGAYPSPGEGLYSADGHQAALIVFVCIEIAGFLYFLWPRRK 429
            L++G   ERL RRGV P+  A  G+   + +Q    A  +  P  L +LFG+FG TG L YA+L+Q FP+ L GR NT  N+L F+AAFA QW +G +IG +P+   G Y   G++AA I+ + ++++G  ++LW  R+
Sbjct:  270 LTMGSATERLGRRGVRPIRVATCGMGAFMLVQLGVLAFGSRLPTPLWMLFGFFGTTGILPYAILSQSFPRRLAGRANTGLNLLVFVAAFAAQWGIGAVIGLWPALAGGGYHPAGYRAAFILMLMLQLSGCAWYLWAARR 408          
BLAST of mRNA_L-digitata_M_contig100211.1.1 vs. uniprot
Match: A0A2J6IW86_9DELT (MFS transporter n=1 Tax=Desulfuromonas sp. TaxID=892 RepID=A0A2J6IW86_9DELT)

HSP 1 Score: 120 bits (302), Expect = 9.550e-30
Identity = 58/132 (43.94%), Postives = 84/132 (63.64%), Query Frame = 1
Query:   22 GFLAERLQRRGVPPVVPAAIGIALSICIQALFAAGWTDYPVLLCVLFGYFGATGTLAYAVLNQHFPQNLTGRVNTAQNMLSFIAAFAVQWLVGVIIGAYPSPGEGLYSADGHQAALIVFVCIEIAGFLYFLW 417
            G LAERL RRG+ P+  AA G+ L +  Q+L    ++D  +L  +LFG+FG    L YA+L+QHFP NLTGR NTA N+L F AAF+ QW +GVII  +P+   G Y+  G++A     + ++I    +F++
Sbjct:  269 GALAERLSRRGLTPLTTAATGLFLFLAAQSLLLLPFSDLALLRWLLFGFFGTAAILPYAILSQHFPPNLTGRANTALNLLVFFAAFSAQWGIGVIIDFWPTTETGGYAVAGYRAGFGTTIILQILAIAWFIF 400          
BLAST of mRNA_L-digitata_M_contig100211.1.1 vs. uniprot
Match: A0A7V8TVJ4_9GAMM (MFS transporter n=1 Tax=Ectothiorhodospiraceae bacterium WFHF3C12 TaxID=1914406 RepID=A0A7V8TVJ4_9GAMM)

HSP 1 Score: 120 bits (302), Expect = 1.080e-29
Identity = 55/141 (39.01%), Postives = 85/141 (60.28%), Query Frame = 1
Query:   16 SVGFLAERLQRRGVPPVVPAAIGIALSICIQALFAAGWTDYPVLLCVLFGYFGATGTLAYAVLNQHFPQNLTGRVNTAQNMLSFIAAFAVQWLVGVIIGAYPSPGEGLYSADGHQAALIVFVCIEIAGFLYFLWPRRKGDG 438
            ++G + ERL R GV PV  A  G+ + +   AL A+GWT +  +L   FG+  +TGTL+YA+++QHF ++L GR NTA N+L F+AAFA QWL+GV++  +  P    Y+  G+Q A      +++    +F    R+  G
Sbjct:  279 TMGLMTERLSRLGVRPVSVAGAGMTIYVAAVALIASGWTLWLPVLLAAFGFLASTGTLSYALMSQHFSRHLAGRANTALNLLVFVAAFAAQWLIGVVLLPWEDPATHAYALPGYQVAFGGLAAVQLGTLAWFFISGRRAPG 419          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100211.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D2BP66_9PROT3.030e-7170.27MFS transporter n=1 Tax=Rhodospirillaceae bacteriu... [more]
A0A2S6Q789_9PROT8.320e-7171.03Putative sulfoacetate transporter SauU n=1 Tax=Alp... [more]
A0A2D8G238_9PROT8.040e-5761.87MFS transporter n=1 Tax=Alphaproteobacteria bacter... [more]
A0A2E8XP38_9PROT2.440e-3443.36MFS transporter n=1 Tax=Alphaproteobacteria bacter... [more]
A0A433HKR2_9GAMM1.950e-3245.14MFS transporter n=1 Tax=Candidatus Competibacterac... [more]
A0A2E3K384_9PROT6.810e-3245.39MFS transporter n=1 Tax=Rhodospirillaceae bacteriu... [more]
A0A523PRQ4_9PROT5.640e-3141.67MFS transporter n=1 Tax=Proteobacteria bacterium T... [more]
UPI001C84C9081.810e-3041.73MFS transporter n=1 Tax=Desulfuromonas versatilis ... [more]
A0A2J6IW86_9DELT9.550e-3043.94MFS transporter n=1 Tax=Desulfuromonas sp. TaxID=8... [more]
A0A7V8TVJ4_9GAMM1.080e-2939.01MFS transporter n=1 Tax=Ectothiorhodospiraceae bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100211contigL-digitata_M_contig100211:3..449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1238182.C882_3276
PFAMsMFS_1
Model size447
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categorysignal anchor
Exons1
Evalue6.52e-29
EggNOG OGsCOG0477@1|root,COG2814@2|Bacteria,1QUY6@1224|Proteobacteria,2TWZ0@28211|Alphaproteobacteria,2JR9Y@204441|Rhodospirillales
DescriptionMajor Facilitator Superfamily
Cds size447
COG categoryEGP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406605.0379536-CDS-L-digitata_M_contig100211:2..4491682406605.0379536-CDS-L-digitata_M_contig100211:2..449Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100211 3..449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100211.1.1prot_L-digitata_M_contig100211.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100211 3..449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100211.1.1

>prot_L-digitata_M_contig100211.1.1 ID=prot_L-digitata_M_contig100211.1.1|Name=mRNA_L-digitata_M_contig100211.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=149bp
FVCVLSVGFLAERLQRRGVPPVVPAAIGIALSICIQALFAAGWTDYPVLL
CVLFGYFGATGTLAYAVLNQHFPQNLTGRVNTAQNMLSFIAAFAVQWLVG
VIIGAYPSPGEGLYSADGHQAALIVFVCIEIAGFLYFLWPRRKGDGLP*
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mRNA from alignment at L-digitata_M_contig100211:3..449+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100211.1.1 ID=mRNA_L-digitata_M_contig100211.1.1|Name=mRNA_L-digitata_M_contig100211.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=447bp|location=Sequence derived from alignment at L-digitata_M_contig100211:3..449+ (Laminaria digitata LdigPH10_18mv male)
TTTGTCTGTGTCCTGTCCGTCGGGTTCCTGGCGGAGCGCCTGCAGCGCCG GGGTGTCCCGCCCGTCGTGCCGGCGGCGATCGGTATCGCGCTGTCGATTT GTATACAGGCCCTGTTTGCCGCTGGATGGACCGACTACCCGGTTCTGTTA TGCGTGCTGTTTGGGTATTTCGGCGCGACCGGGACTCTGGCCTACGCGGT GCTGAACCAGCACTTCCCGCAGAACCTGACGGGACGCGTAAACACCGCCC AGAACATGCTGTCTTTTATCGCTGCCTTTGCCGTCCAATGGTTGGTCGGG GTGATTATCGGGGCTTATCCGTCGCCGGGTGAGGGTTTGTACAGCGCAGA CGGACACCAGGCGGCGCTGATTGTCTTCGTCTGTATAGAGATCGCGGGGT TCCTGTATTTCCTCTGGCCCCGCCGAAAAGGAGACGGTTTGCCATGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig100211:3..449+

>mRNA_L-digitata_M_contig100211.1.1 ID=mRNA_L-digitata_M_contig100211.1.1|Name=mRNA_L-digitata_M_contig100211.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=447bp|location=Sequence derived from alignment at L-digitata_M_contig100211:3..449+ (Laminaria digitata LdigPH10_18mv male)
TTTGTCTGTGTCCTGTCCGTCGGGTTCCTGGCGGAGCGCCTGCAGCGCCG
GGGTGTCCCGCCCGTCGTGCCGGCGGCGATCGGTATCGCGCTGTCGATTT
GTATACAGGCCCTGTTTGCCGCTGGATGGACCGACTACCCGGTTCTGTTA
TGCGTGCTGTTTGGGTATTTCGGCGCGACCGGGACTCTGGCCTACGCGGT
GCTGAACCAGCACTTCCCGCAGAACCTGACGGGACGCGTAAACACCGCCC
AGAACATGCTGTCTTTTATCGCTGCCTTTGCCGTCCAATGGTTGGTCGGG
GTGATTATCGGGGCTTATCCGTCGCCGGGTGAGGGTTTGTACAGCGCAGA
CGGACACCAGGCGGCGCTGATTGTCTTCGTCTGTATAGAGATCGCGGGGT
TCCTGTATTTCCTCTGGCCCCGCCGAAAAGGAGACGGTTTGCCATGA
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