mRNA_L-digitata_M_contig100210.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100210.1.1
Unique NamemRNA_L-digitata_M_contig100210.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100210.1.1 vs. uniprot
Match: A0A520NS40_9PROT (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A520NS40_9PROT)

HSP 1 Score: 79.3 bits (194), Expect = 3.360e-16
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 EQYKGGNEKVLGWFVGQVMKATQGKANPQAVNEILRQKLDG 123
            +QYK GNEKVLGWFVGQVMKAT GKANPQAVNE+LR+KLDG
Sbjct:  443 DQYKSGNEKVLGWFVGQVMKATHGKANPQAVNEMLRKKLDG 483
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BLAST of mRNA_L-digitata_M_contig100210.1.1 vs. uniprot
Match: A0A2G2R5Z6_9PROT (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2G2R5Z6_9PROT)

HSP 1 Score: 77.8 bits (190), Expect = 1.180e-15
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 EQYKGGNEKVLGWFVGQVMKATQGKANPQAVNEILRQKLDG 123
            EQYKGGNEK+LGWFVGQVMKATQGKANP  VN++L++KLDG
Sbjct:  445 EQYKGGNEKILGWFVGQVMKATQGKANPGQVNKLLKEKLDG 485
[Close]
BLAST of mRNA_L-digitata_M_contig100210.1.1 vs. uniprot
Match: A0A6N7FC23_9PROT (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7FC23_9PROT)

HSP 1 Score: 76.6 bits (187), Expect = 3.020e-15
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    4 QYKGGNEKVLGWFVGQVMKATQGKANPQAVNEILRQKLDG 123
            QY+GGNEK+LGWFVGQVMKATQGKANPQ VNEIL++KL G
Sbjct:  445 QYRGGNEKILGWFVGQVMKATQGKANPQMVNEILKKKLGG 484
[Close]
BLAST of mRNA_L-digitata_M_contig100210.1.1 vs. uniprot
Match: A0A2S6Q9L2_9PROT (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6Q9L2_9PROT)

HSP 1 Score: 75.9 bits (185), Expect = 5.640e-15
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 EQYKGGNEKVLGWFVGQVMKATQGKANPQAVNEILRQKLD 120
            EQYKGGNEKV GWFVGQVM+AT GKANPQ VNE LR+KLD
Sbjct:  443 EQYKGGNEKVFGWFVGQVMRATHGKANPQVVNEFLRKKLD 482
[Close]
BLAST of mRNA_L-digitata_M_contig100210.1.1 vs. uniprot
Match: A0A2D8G451_9PROT (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2D8G451_9PROT)

HSP 1 Score: 75.1 bits (183), Expect = 1.070e-14
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    4 QYKGGNEKVLGWFVGQVMKATQGKANPQAVNEILRQKLDG 123
            QYKGGNEKV+GWFVGQVMKAT GKANP AVNE+L +KLDG
Sbjct:  444 QYKGGNEKVVGWFVGQVMKATNGKANPXAVNELLLKKLDG 483
[Close]
BLAST of mRNA_L-digitata_M_contig100210.1.1 vs. uniprot
Match: A0A351T7A9_9PROT (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit B (Fragment) n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T7A9_9PROT)

HSP 1 Score: 70.1 bits (170), Expect = 1.480e-14
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 EQYKGGNEKVLGWFVGQVMKATQGKANPQAVNEILRQKLD 120
            E+ KGG EK+LGWFVGQVMKATQGKANPQ VNE+LR K D
Sbjct:   63 EEVKGGKEKLLGWFVGQVMKATQGKANPQIVNEMLRGKFD 102
[Close]
BLAST of mRNA_L-digitata_M_contig100210.1.1 vs. uniprot
Match: A0A843RJR1_9PROT (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A843RJR1_9PROT)

HSP 1 Score: 73.2 bits (178), Expect = 5.050e-14
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 EQYKGGNEKVLGWFVGQVMKATQGKANPQAVNEILRQKL 117
            EQ+KGGNEK+LGWFVGQVMKATQGKANP  VN++LR+KL
Sbjct:  443 EQFKGGNEKILGWFVGQVMKATQGKANPGLVNQVLRKKL 481
[Close]
BLAST of mRNA_L-digitata_M_contig100210.1.1 vs. uniprot
Match: A0A2S6TNP3_9PROT (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Alphaproteobacteria bacterium MarineAlpha4_Bin2 TaxID=2013075 RepID=A0A2S6TNP3_9PROT)

HSP 1 Score: 73.2 bits (178), Expect = 5.050e-14
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 EQYKGGNEKVLGWFVGQVMKATQGKANPQAVNEILRQKLDG 123
            EQY+ GN KVLGWFVGQ+MK TQGKANPQ VNE+LR+KL G
Sbjct:  444 EQYRAGNTKVLGWFVGQIMKETQGKANPQTVNELLRKKLSG 484
[Close]
BLAST of mRNA_L-digitata_M_contig100210.1.1 vs. uniprot
Match: A0A7C9KK08_9PROT (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7C9KK08_9PROT)

HSP 1 Score: 72.8 bits (177), Expect = 6.900e-14
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 EQYKGGNEKVLGWFVGQVMKATQGKANPQAVNEILRQKLDG 123
            EQ++ GNEK+LGWFVGQ+MKAT GKANP AVNEILR+KL G
Sbjct:  442 EQFRSGNEKILGWFVGQIMKATGGKANPAAVNEILRKKLSG 482
[Close]
BLAST of mRNA_L-digitata_M_contig100210.1.1 vs. uniprot
Match: A0A2E4XSA6_9PROT (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E4XSA6_9PROT)

HSP 1 Score: 72.8 bits (177), Expect = 6.900e-14
Identity = 31/39 (79.49%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 EQYKGGNEKVLGWFVGQVMKATQGKANPQAVNEILRQKL 117
            EQY+ GNEK++GWFVGQVMK TQGKANPQAVNE+L++KL
Sbjct:  444 EQYRSGNEKIIGWFVGQVMKETQGKANPQAVNELLKKKL 482
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100210.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A520NS40_9PROT3.360e-1687.80Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
A0A2G2R5Z6_9PROT1.180e-1582.93Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
A0A6N7FC23_9PROT3.020e-1585.00Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
A0A2S6Q9L2_9PROT5.640e-1585.00Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
A0A2D8G451_9PROT1.070e-1485.00Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
A0A351T7A9_9PROT1.480e-1480.00Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCA... [more]
A0A843RJR1_9PROT5.050e-1482.05Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
A0A2S6TNP3_9PROT5.050e-1478.05Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
A0A7C9KK08_9PROT6.900e-1478.05Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]
A0A2E4XSA6_9PROT6.900e-1479.49Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100210contigL-digitata_M_contig100210:3..128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog663932.KB902575_gene306
Preferred namegatB
PFAMsGatB_N,GatB_Yqey
Model size126
Max annot lvl204441|Rhodospirillales
KEGG rclassRC00010
KEGG koko:K02434
KEGG ReactionR03905,R04212
KEGG Pathwayko00970,ko01100,map00970,map01100
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue6.59e-13
EggNOG OGsCOG0064@1|root,COG0064@2|Bacteria,1MUKG@1224|Proteobacteria,2TRHX@28211|Alphaproteobacteria,2JPFI@204441|Rhodospirillales
EC6.3.5.6,6.3.5.7
DescriptionAllows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
Cds size126
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406604.9728398-CDS-L-digitata_M_contig100210:2..1281682406604.9728398-CDS-L-digitata_M_contig100210:2..128Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100210 3..128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100210.1.1prot_L-digitata_M_contig100210.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100210 3..128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100210.1.1

>prot_L-digitata_M_contig100210.1.1 ID=prot_L-digitata_M_contig100210.1.1|Name=mRNA_L-digitata_M_contig100210.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=42bp
EQYKGGNEKVLGWFVGQVMKATQGKANPQAVNEILRQKLDG*
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mRNA from alignment at L-digitata_M_contig100210:3..128+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100210.1.1 ID=mRNA_L-digitata_M_contig100210.1.1|Name=mRNA_L-digitata_M_contig100210.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=126bp|location=Sequence derived from alignment at L-digitata_M_contig100210:3..128+ (Laminaria digitata LdigPH10_18mv male)
GAACAGTACAAGGGCGGCAATGAAAAGGTGCTCGGCTGGTTCGTCGGCCA
GGTGATGAAGGCGACCCAGGGCAAGGCCAACCCCCAGGCGGTCAACGAGA
TTCTGCGGCAGAAGCTGGACGGGTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100210:3..128+

>mRNA_L-digitata_M_contig100210.1.1 ID=mRNA_L-digitata_M_contig100210.1.1|Name=mRNA_L-digitata_M_contig100210.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=126bp|location=Sequence derived from alignment at L-digitata_M_contig100210:3..128+ (Laminaria digitata LdigPH10_18mv male)
GAACAGTACAAGGGCGGCAATGAAAAGGTGCTCGGCTGGTTCGTCGGCCA
GGTGATGAAGGCGACCCAGGGCAAGGCCAACCCCCAGGCGGTCAACGAGA
TTCTGCGGCAGAAGCTGGACGGGTAG
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