mRNA_L-digitata_M_contig10020.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10020.1.1
Unique NamemRNA_L-digitata_M_contig10020.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10020.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10020contigL-digitata_M_contig10020:1611..6125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size278
Hectar predicted targeting categoryother localisation
Exons2
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406604.7337632-CDS-L-digitata_M_contig10020:1610..17551682406604.7337632-CDS-L-digitata_M_contig10020:1610..1755Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10020 1611..1755 -
1682406604.7438893-CDS-L-digitata_M_contig10020:5994..61251682406604.7438893-CDS-L-digitata_M_contig10020:5994..6125Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10020 5995..6125 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10020.1.1prot_L-digitata_M_contig10020.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10020 1611..6125 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10020.1.1

>prot_L-digitata_M_contig10020.1.1 ID=prot_L-digitata_M_contig10020.1.1|Name=mRNA_L-digitata_M_contig10020.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=92bp
MHRVAALERDVVKIEALWDKDKGQRVIEVWMSLLKKTTFKPSNWRSYSPR
ICAIMTLQNWWRSMLVVKLGWSPPSERNGSSPRSTTGDGAST
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mRNA from alignment at L-digitata_M_contig10020:1611..6125-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10020.1.1 ID=mRNA_L-digitata_M_contig10020.1.1|Name=mRNA_L-digitata_M_contig10020.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=4515bp|location=Sequence derived from alignment at L-digitata_M_contig10020:1611..6125- (Laminaria digitata LdigPH10_18mv male)
ATGCATCGCGTTGCGGCTCTGGAGAGGGACGTGGTGAAGATCGAGGCCCT
GTGGGACAAGGATAAGGGTCAAAGGGTCATCGAGGTGTGGATGAGCCTCC
TCAAGAAGACTACCTTTAAGCCCTCCAACTGGTGAGATATATATATATAT
ATATATACCAGTCTGACCCTAAATATAAGGTGCATTGGTACCCTTTGTGG
ACATCTAAATGTCCCCTATATTTAGGTTCAGTCTGGTATATGTTAGGGTA
TCCCCTTGGACGCGTGCTACGATAGAGGTAGCACATTTTAGGAAAATATT
TCTGACTGACCGGGCCCCTTAGCCCAATTTTTGTTAGAATCTCGTTTTGG
TTTTTGTTTTTTTTCAATATTTTTAGTTTTGGCACCTAAGCCATGGTGAT
TTGTCGTCGGCTTACCGGTAGGCGTGTGAGATTTTTCAAAGTCCGTTTTT
TTGGGACGAGGTATGGGCTCCTCAAGTAAGGAGCCTCAGAAAATTCAGGG
TTGCATCCCTTCCGTAGCGTGTGTCCTCTCCTCTCCTCTCTTGTGGCGTC
ACGATTTGCAGTTTTGGTAAGTGTCCCCAGGATGTGCCTCCTGAAAGAAG
ACGCCAACCCTGAGCCCTCCAGCAGGTGAGATACTACCGTACATGTTTAT
GGTATCCCCTTTCCCCCTGCTGTGGCGTTATGATTTGCAGTAAAGTGTCC
CCTGGATATATGATGAGCCTCCTAAAGAAGAGACCCTAACCCTAACGCCT
CCAAGTTATGACACCAGTCTGACCCTAAATATAGGGGACATTTAGATGGC
CACAAAAGCTACAAATGGACCTTATATTTATGGTCAGACTGGTACATATT
ATGGCGCACTCTTTCCGACTTGTGCTACGGTGGGGGTAGTACCTAATACC
ACTCTGTCCGGAAATATACGCACCGTTTTATATGAATATTTGTATGAAAA
CTGTGCTTATATTTCGGGACAGAGTGGCATGTTTCCACACATCGGACAGA
TCATCGATTTCCCACTTCATGATCTAGATATTTCAGGGCAGATCTATTTC
CTGATCTGAATGATCTATCTAGCTCATGTTGCCCGGTGGGAGACGTAAAA
ATCTGCAAGATTATTTTAGGGCAGGTTTCCTAGGATAGATCTGTACGATG
CAGATCCTGCACAACATCTCATAGCTGAAGGTTAGGATCTAGATGATCTA
GATGATCTAGATCATGATCTGTCCGACGTGTGTATATTTCTGAGGGTTCT
TGCTTGAGGAACTCTGGGCCTCACGCGACAACAACCGACCTTTAAGGAGA
ATCGTACAGGCACCTTACGAACAATACACACATCGGACAGATAATTGATT
CCCACCGCACGATCTAGATATTTCAGGGAAGATCTGTTTCCTCGTCTGTA
TCATCCAGCTCATGCTGCCGGGTGGGAGCCGTGTAACCAGCATGATCTAG
GACAATGTTTCCTTGGTTGGATCTGTACGATACAGATCCTGCACCGGATC
TCAGCGCGGCAGGTTAGGGTCTAGATGATCTTGGTCATGATCTGTCCGAC
GTGTGGACCATTAGCGTCAAATACACATCGGATCCACTTGTATTGGACCA
AGGCCCCGGTGACTGGTGCTACGGTATATAGGGGGGCTACCCTCACTTTC
ACTACTACCGCGTTTAGATCACTCAGGCGAGTGGCTTCCGTACCTCACTC
AAAACTTGGCGTTGACACAACTTTGATGGCGTATTCATAGCGTGACAAAC
AACCCCATGGCGGTGCACATCGCATAAAAAAAAAACAAAATACCAGTCTG
ACCCCAAATATAGGGGACGTTTAGAGGCCCACAAAACGTACAAGTGCACC
TTATATTTACGTTCAGACTGATAGCATAGACTAAAAGCTAATAATTACGG
TATATAAGACACTCTGACTCTAATTCCTAGTAATTTGTCCCCAAAACGGG
ACTGCGGTCCTAAAGGGGTTAAGGACTGCTAATAATTACGGCAGTATAAG
TCACTCGGCCGAGTGGCTCTAGCGGGGGGGAAAAAAATGACCCAAACGTG
GCCCCCCTAAACCGTAGCTTTGGTCCGGGGGACGATAGTAAATAGGACCC
ACGACATACACAAAAACCTATATAATACACTATTTTTGCTAATCATATTT
GGTCCTATTTACTACGTATGGTCCCCCCGTAATAGGGCTTCTGTTTCAGC
GTCTCGGAGCCAGTCGCGCTGGCTCTATCGTGTGCCTCGAAGGTGAAAAC
TAACTAATGTCTTGATTGGTATGGATTAATGAAATAATTCGCCCAAAAAC
TCCCTCCCCCCACCACCAACTAAACCCCTCCCTATAATCATCTACATCAC
AAACTCTAAACAAGCATCANNNNNNNNNNTATTGTGCTCGCCAAGGTAAA
AAATTCATAATTTTTTTATTGGTATTGATTAATTAAATAATTTCCCCCCC
CCCCCCCCCCCCCCCCCTCTACTATCTCATTGCTTGAATGGCAACCACAA
TAATAATAACTAGAATAGAACGTAAAGAGCACGTATTGAGAAGGCATACC
CTTTCTTCCTTTGCGGTCTCACTTGTAGGCTTTGGCACTTTCCGGTTTCT
TCGCAATATGCGCTGCCATCGAATATACGTAGCTCGTTTCGAAGCTGTTT
GTGCCAACGATAATTATTTCATGCTACTTGTAATTCAAGACGATATATTA
GTCTTCATGTTCGAAGGAGACGATATTTGATGCGTCCGTTTTCGAGTGAG
GTGCAGAGCCGCTCGCGAGAGTGCCCTGAATTTCGGCGGTAAAAAGAAAA
GGTTAAAAACGGGGGTGGCCCCCCTGCCCTAGCCGTGCTCATTGGGTAGC
CCCTCAGGTGAGGAGCATCACGCGTCGGACAGATCAGGCAGATCATGATC
TAGATCATCTAGACCCTAACCCAGCCGTTCTGAGATGCTGCGCAGGATCT
GTATCGTTGCAGATCCAATCCGGGAAACATGTCCTAGATCGTGCAGATTG
TACGGCTCCCACACACCCGGCAACATGAGCTAGACCGGACATATGCAGGA
AACAGATCTTCCCTGAAAGATCTAGATCATGCAGTGGGGATCGATCGACG
ATCTATCTGTCCGACGTGTCGAAATAATTGGGGCTCATAGCGCAACCTTT
AGCGTAGCGCGGCTTCTCCCCCCTGCTGCGGTGTGATGACTTGTAGAGAG
TGTCCCTCCTTCATATTTACTGGAAGAGGGTGAGCCTTATAAAAGCAAGG
AGGTCACCCCATGGTAGGGCTGCAGCAGAAGTTTCTGAGCTGCTCCTTAC
ATGCGGAGCTCAATATCTCACCCGAAACATGACTTCGAAGGGATTCGTTC
CCCACAACCAGACCAACACTTCTATGCGCTAGTCCTATTTTAGAAAAAAA
AACATATACTAGTGAAATTTGTCAAACTACCCGGTAGTTCCTCACTTGAG
GATCTCAACCGTTTTAGAAATGTTTCGTCCAAACAGTGCAACCCGTACCG
TGGGATGACTCACAGACCAAAGGCTCCGCACGATTCGGGGGCCTTTACCG
CCATCTGAGCACACCATCTTACGTGTATATGCGCGTGCGTGTGTGAGCTC
CTCACATGCCAGGCGTCACGGCAAAACTTCGTACGTGACCTAGGCAGACC
TCCGGGCTTGCCTAACTTACCTCCGGGCTTGCCTAATTTAGTCACGTTTC
CGCTGTACCACTCACGACGTGTGCTGGTACATATGTTGGTTGCATTTTGT
AACAGCTTTACTTGTAACAATCCAGTCTTCCGGTGTTTCATCCCGGCGGC
TAAACGAGCGGGGCTCCGCCATGCCTCGCTCTGAGTCATGTTTTCCCGAT
ACGAACACGCCTTCCATGTTTTGTTCGCCATACGTCCCCGTATCTCTATT
TCAGGGAATTTTCGGGGCTTTCCTGGACATCATAGTGACATATATATGTA
CACAGCTTCAACCCACGGCGACACGTGTTGGGTTTCTCGCACTTTCTGCA
AATAAACGTGTCATAGAATAGCAGAGTGCGCATTTTTAGCTCAATATTTT
CACGGGGTAGGGATACCACTTTTTTGGCTCAATATTTTCTGACCGGTTGA
GCTTCTCAAGTGAGTAACTACCGGTTTAGTATCATAATTTTTTTCGAATA
TACTTGGTTTAGGGCTACGTCGTATATAGCGCATAGAAATGTCCAAGGTT
GGGTTTGCTCGAACAAATTTCTTCGTAAGACATGTTTCGGGTGAGATATT
GAGCTCCTCATGTGAGGAGCTCCGAAAAAAACTGGCACCACCCCTATACA
CCGTGGGACTGCTCTACTGTCAGGCTTATACCGTGTGTGCTTCGCCGTAC
TTTTAAATGGATTGCTATAGGCGTAGCTACAGCCCCCGCATTTGTGCGAT
CATGACTCTCCAAAACTGGTGGAGGAGTATGCTCGTTGTCAAACTGGGCT
GGAGTCCGCCCTCAGAGAGAAACGGTTCTTCCCCGAGAAGCACCACCGGA
GACGGCGCATCTACG
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Coding sequence (CDS) from alignment at L-digitata_M_contig10020:1611..6125-

>mRNA_L-digitata_M_contig10020.1.1 ID=mRNA_L-digitata_M_contig10020.1.1|Name=mRNA_L-digitata_M_contig10020.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=276bp|location=Sequence derived from alignment at L-digitata_M_contig10020:1611..6125- (Laminaria digitata LdigPH10_18mv male)
ATGCATCGCGTTGCGGCTCTGGAGAGGGACGTGGTGAAGATCGAGGCCCT
GTGGGACAAGGATAAGGGTCAAAGGGTCATCGAGGTGTGGATGAGCCTCC
TCAAGAAGACTACCTTTAAGCCCTCCAACTGGCGTAGCTACAGCCCCCGC
ATTTGTGCGATCATGACTCTCCAAAACTGGTGGAGGAGTATGCTCGTTGT
CAAACTGGGCTGGAGTCCGCCCTCAGAGAGAAACGGTTCTTCCCCGAGAA
GCACCACCGGAGACGGCGCATCTACG
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