mRNA_L-digitata_M_contig1002.4.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig1002.4.1
Unique NamemRNA_L-digitata_M_contig1002.4.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig1002.4.1 vs. uniprot
Match: D8LP61_ECTSI (EsV-1-24 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP61_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 1.450e-67
Identity = 219/612 (35.78%), Postives = 269/612 (43.95%), Query Frame = -1 
Query:  691 LVANDVVHYLQRRYVGRRVPGPSSNAIRHLPCGHGILALKQCLGHEVKHVIQVVRHKLSQG*FRASLCCIVRRLRRRPHRRCR*CSLQLLVLFFLLLLLLV------------HRISCGRRHDV------------------------VLPAPRSSCYLIMAK---------GVCTTHTVSSMAPRADDHVRARLGHHLLAFRGALHLRQRVSDQLQRSVPLPQYFTAFPVDHDGVCEFELHFFAHPRR--RSRRSSVCAVGAPRCLPQAFEVHLGQVQKKMVQWPLVLLSLDRSCSASHRLREGEYLGHHVRKLQPRLELFFLGLLRVFFELLRLFYVVVEEGDEWRVVSVFFLSRCVSEDPYGLFFRA----------------VLLIGLFF------------LXXXXXXXFRSFLPPLSXXXXXXXXXX*LSLD------------LHNLFFP*LLVI-----------------VEECLASEHLPHTGIRRVDEELFRHPCKRYEVFHPFPWVFDDDLLGFLVDVVVVRDRALYS*CALYTLWRGHFTHHAFEIADRPRNHPGVRRQLLRGVMIIPVVARCRALLEIVCLGTHPILAEMDCS*CRRD 2214
            +V +DV+H  QRRYVG  +  PS N + HL  GH  LA  +CL H  ++V++VVR+ +S   FR S+C  +          CR C   L+ + F    LL             H IS GR+ +                              R +  L +           GV  T T S+++   D     R+   L   R  L +  +V   L+RS  LPQYF A  V HDG  E  LH FA P R  + + ++V A+GA RCL  AF VHL  +QK+MVQ PLV+  LDRSCSAS  L EGEY  HH         LFFL     F  L+   + VV+ G +  VV VF   R VS D +GL                    +  IGLFF                      + L P+       XXXX L L             L  L  P LL                   +EE  A E    T +RRV++E FR PC   E F     V D    G LVDV   RDRALYS CALYTL R HF HH  +I    R  PGVRR LLRGV IIPVV R   LL +V LGTH  +AEM C  C  D
Sbjct:    1 MVIDDVLHDRQRRYVGSGISIPSRNVVCHLRDGHRTLAFTKCLDHGAQNVLKVVRNPISSIGFRVSVCTGL----------CRRCLHFLVFIKFPHTRLLXXXXXXXXXXXXFHGISGGRQQNASGFLXXXXXXXXXXXXRGXXXXXRXXXXSRDNAELFLLHYARNFRVLPGVRETRTPSTVSRGTDSPKHIRVDDELSTVRHDLCIFMQVPHHLERSASLPQYFAACLVGHDGFVETVLHCFASPHRWPKFQWATVNALGASRCLAHAFAVHL-DIQKQMVQRPLVVRPLDRSCSASLHLGEGEYFWHHF--------LFFLRASCTFLRLVCFLHFVVDIGKDRTVVLVFRTKRFVSVDRFGLLXXXXXXXXXXXXXXXXXXXLSCIGLFFSRLVRAFPPLGPFVTLLLGPLLTILAPVGAFPPLCXXXXXLGLVRASPTPGLLLTLLPLLTLPTLLSFGGVLGAFLSAVPDLPKFLEEIPAFEQSSRTDVRRVNDEAFRPPCNTDEAFL---CVSDCVHPGLLVDVNRFRDRALYSQCALYTLRREHFAHHGVQITVLSRYDPGVRRHLLRGVHIIPVVGRSCDLLILVFLGTHVTVAEMKCLGCPCD 590
[Close]
BLAST of mRNA_L-digitata_M_contig1002.4.1 vs. uniprot
Match: Q8QNN7_ESV1K (EsV-1-24 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNN7_ESV1K)

HSP 1 Score: 204 bits (518), Expect = 4.750e-54
Identity = 164/430 (38.14%), Postives = 204/430 (47.44%), Query Frame = -1 
Query: 1171 LGKKNTS*EVCFV-LHLFLLVANDVVHYLQRRYVGRRVPGPSSNAIRHLPCGHGILALKQCLGHEVKHVIQVVRHKLSQG*FRASLCCIVRRLRR---------RPHRRCR*CSLQLLVLFFLLLLLLVHRISCGRRH-------------------------------------------------DVVLPAPRSSCYLIMAKGVCTTHTVSSMAPRADDHVRARLGHHLLAFRGALHLRQRVSDQLQRSVPLPQYFTAFPVDHDGVCEFELHFFAHPRRRS--RRSSVCAVGAPRCLPQAFEVHLGQVQKKMVQWPLVLLSLDRSCSASHRLREGEYLGHHVRKLQPRLELFFLGLLRVFFELLR---LFYVVVEEGDEWRVVSVFFLSRCVSEDPYGLFFRAVLLIGLFFLXXXXXXXFRSFLPPLS 2268
            L KK+T+ EVC   +HL ++V +DV+H  QRRYVG  V  PS N + HL  GH  LA  +CL H  K+V +VVR+ +S   FR S+C  +RR            RP                     L HRI  GR+                                                  D  + A   + YL +  GV  T T S+M+   D     RL H L  FR A+ + Q+V   L+RSV LPQYF A  V  D   E ELH FA P R    + ++V A+GA RCLP AF VH+ ++QK+MVQ PL++ SLDRSCSAS  LREGEY  HH           FL L R    LL     F  VV+ GDE RVV VF  SR VSED + LF+  VLL GLF +        R+F PPL 
Sbjct:   16 LRKKSTAQEVCTGRIHLVIMVLDDVLHDRQRRYVGSGVSIPSGNVVCHLRHGHRSLAFTKCLDHSAKNVFKVVRYPVSSIGFRVSVCAGLRRCCLHFLVFIEFPRPRLLIXXXXXXXXXXXXXXXXXLFHRIFGGRKQNAPSFLXXXXXXXXXXXXXXXXXXXXXXXWGRQKALGFFFFLRISGGSQDDEMFALHYARYLRVFPGVRETRTPSTMSRWTDGLKHTRLDHELATFRQAVRIFQQVPHHLERSVALPQYFAACLVGDDRFGEKELHCFASPHRWPLIQWTTVDALGASRCLPHAFGVHV-EIQKQMVQRPLMVRSLDRSCSASLHLREGEYFWHH-----------FLSLFRFSCTLLCPNCFFDFVVDIGDERRVVVVFHTSRYVSEDLWELFYPTVLLFGLFCIDVFFSRLVRAF-PPLG 432
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig1002.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LP61_ECTSI1.450e-6735.78EsV-1-24 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QNN7_ESV1K4.750e-5438.14EsV-1-24 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig1002contigL-digitata_M_contig1002:4944..7211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size2268
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-24
Ec32 orthologEc-06_006510.1
Cds size2268
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406604.7089956-CDS-L-digitata_M_contig1002:4943..72111682406604.7089956-CDS-L-digitata_M_contig1002:4943..7211Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1002 4944..7211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig1002.4.1prot_L-digitata_M_contig1002.4.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig1002 4944..7211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig1002.4.1

>prot_L-digitata_M_contig1002.4.1 ID=prot_L-digitata_M_contig1002.4.1|Name=mRNA_L-digitata_M_contig1002.4.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=756bp
DLFFQILSEVDKDPTAEDGFLGEVEKLVDDGADVLEACRSLSQCQKNGFP
RAKKNTYIVQHGKCQGGKGKETYIGFLKSWLQAKEAPVFITKNDSGEVGR
HNDGMDDFDTYSARIWKLAGLTGESRPILSTFEGNPKQYERSLKQARDGS
SVIPVYALIDNPTRMKILRGEVVPIISKICGTTDGAANMRIFADEADLTF
RNKETVGARRWTDPFGGWKSLYEACSSITFITATSGAIHLSENRMGSKTH
DFQQGTTSSNYWDYHDPSQELPPNARVISRAVGDLECMVRKMASPKSVQC
ALAIESSVSHNHDIDKEAKQVVVKYPREGVKNFVSLAWMAEQLLVYTADA
GMRKVFGSETFFNDYEELGEEEVVEIERELRKEEAKKRKKGKRRKKGAEE
CEEEEPEEEESDEEDRAEEEPIRVFRYTPAEKKDRDYPPFITFLHDNIEE
AKKLKKDAQESKEEELESGLELADVVPKILTFAKAVAGRARSIKGKKHEW
PLDHLFLHLPKMHFEGLRQAAGRANSTDTRTTGPTTWMSEEMQLKLTNAI
VVDRKCSEILRQGNTPLQLVRHTLTEVKSAPEGEEVVAKSGAYMVIGPRG
HTRNGVGRAYTLCHDKVTRTPRRGKNNIVSPPTGDAMDEEEEEEEEENEE
LERASAAAAVGAAAESANDAAEGGPELTLAEFMTNHLDDVLDLMAQALLE
RKDSMTARQMADGIAGRTGYPSTNIPSLEVVNYIIRHKEKEMEDKAYFLG
GVFLP*
back to top

mRNA from alignment at L-digitata_M_contig1002:4944..7211-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig1002.4.1 ID=mRNA_L-digitata_M_contig1002.4.1|Name=mRNA_L-digitata_M_contig1002.4.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=2268bp|location=Sequence derived from alignment at L-digitata_M_contig1002:4944..7211- (Laminaria digitata LdigPH10_18mv male)
GACCTGTTTTTCCAGATCCTCTCCGAGGTGGACAAGGACCCGACTGCGGA
GGATGGTTTTCTTGGTGAGGTTGAGAAGCTCGTGGATGACGGCGCTGACG
TCTTGGAGGCATGCCGGAGTTTATCCCAGTGCCAGAAAAACGGCTTTCCG
CGAGCCAAGAAAAATACCTACATAGTTCAACACGGAAAGTGTCAGGGTGG
AAAGGGAAAAGAGACTTATATTGGTTTCTTGAAGTCATGGCTGCAGGCGA
AGGAAGCGCCGGTCTTCATAACCAAAAACGACTCCGGCGAAGTGGGTCGG
CACAACGATGGCATGGACGATTTCGACACCTATTCCGCACGCATCTGGAA
GCTTGCCGGTCTCACGGGAGAATCAAGACCCATTTTAAGCACGTTCGAAG
GCAACCCAAAACAGTACGAAAGAAGCCTGAAGCAAGCAAGGGACGGTTCA
TCGGTAATCCCGGTTTATGCTCTGATAGACAACCCGACAAGAATGAAAAT
TCTTCGGGGGGAAGTAGTACCCATCATCAGCAAAATATGTGGAACAACGG
ACGGAGCCGCCAACATGCGCATCTTCGCAGACGAGGCAGATCTTACTTTC
CGTAACAAGGAAACGGTAGGTGCACGACGCTGGACAGATCCATTTGGTGG
ATGGAAGTCTCTGTACGAAGCCTGTTCGTCAATCACCTTCATCACGGCGA
CATCAGGAGCAATCCATCTCAGCGAGAATCGGATGGGTTCCAAGACACAC
GATTTCCAACAAGGCACGACATCGAGCAACTACTGGGATTATCATGACCC
CTCGCAGGAGCTGCCGCCGAACGCCAGGGTGATTTCTCGGGCGGTCGGCG
ATCTCGAATGCATGGTGCGTAAAATGGCCTCGCCAAAGAGTGTACAGTGC
GCACTAGCTATAGAGAGCTCGGTCTCGCACAACCACGACATCGACAAGGA
AGCCAAGCAAGTCGTCGTCAAATACCCAAGGGAAGGGGTGAAAAACTTCG
TATCTCTTGCATGGATGGCGGAACAGCTCCTCGTCTACACGGCGGATGCC
GGTATGAGGAAGGTGTTCGGAAGCGAGACATTCTTCAACGATTACGAGGA
GCTAGGGGAAGAAGAGGTTGTGGAGATCGAGAGAGAGCTACGGAAGGAAG
AGGCGAAGAAGCGCAAGAAAGGAAAGAGGCGGAAGAAAGGAGCGGAAGAG
TGCGAGGAAGAAGAGCCCGAGGAAGAAGAGTCCGATGAGGAGGACCGCGC
GGAAGAAGAGCCCATACGGGTCTTCCGATACACACCTGCTGAGAAAAAAG
ACAGAGACTACCCTCCATTCATCACCTTCCTCCACGACAACATAGAAGAG
GCGAAGAAGCTCAAAAAAGACGCGCAAGAGTCCAAGGAAGAAGAGCTCGA
GTCTGGGCTGGAGCTTGCGGACGTGGTGCCCAAGATACTCACCTTCGCGA
AGGCGGTGGCTGGCAGAGCAAGATCTATCAAGGGAAAGAAGCACGAGTGG
CCACTGGACCATCTTTTTCTGCACTTGCCCAAGATGCACTTCGAAGGCCT
GAGGCAGGCAGCGGGGCGCGCCAACAGCACAGACACTCGAACGACGGGAC
CTACGACGTGGATGAGCGAAGAAATGCAGCTCAAACTCACAAACGCCATC
GTGGTCGACCGGAAATGCAGTGAAATACTGAGGCAAGGGAACACTCCGCT
GCAGTTGGTCAGACACACGCTGACGGAGGTGAAGAGCGCCCCGGAAGGCG
AGGAGGTGGTGGCCAAGTCGGGCGCGTACATGGTCATCGGCCCGAGGGGC
CATACTCGAAACGGTGTGGGTCGTGCATACACCCTTTGCCATGATAAGGT
AACAAGAACTCCGAGGCGCGGGAAGAACAACATCGTGTCGCCGCCCACAG
GAGATGCGATGGACGAGGAGGAGGAGGAGGAGGAAGAAGAGAACGAGGAG
TTGGAGAGAGCATCAGCGGCAGCGGCGGTGGGGGCGGCGGCGGAGTCGGC
GAACGATGCAGCAGAGGGAGGCCCTGAACTAACCCTGGCTGAGTTTATGA
CGAACCACCTGGATGACGTGCTTGACCTCATGGCCCAGGCACTGCTTGAG
CGCAAGGATTCCATGACCGCACGGCAGATGGCGGATGGCATTGCTGGAAG
GACCGGGTACCCTTCTACCAACATACCGTCGCTGGAGGTAGTGAACTACA
TCATTCGCCACAAGGAGAAAGAGATGGAGGACAAAGCATACTTCTTAGGA
GGTGTTTTTCTTCCCTAG
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig1002:4944..7211-

>mRNA_L-digitata_M_contig1002.4.1 ID=mRNA_L-digitata_M_contig1002.4.1|Name=mRNA_L-digitata_M_contig1002.4.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=2268bp|location=Sequence derived from alignment at L-digitata_M_contig1002:4944..7211- (Laminaria digitata LdigPH10_18mv male)
GACCTGTTTTTCCAGATCCTCTCCGAGGTGGACAAGGACCCGACTGCGGA
GGATGGTTTTCTTGGTGAGGTTGAGAAGCTCGTGGATGACGGCGCTGACG
TCTTGGAGGCATGCCGGAGTTTATCCCAGTGCCAGAAAAACGGCTTTCCG
CGAGCCAAGAAAAATACCTACATAGTTCAACACGGAAAGTGTCAGGGTGG
AAAGGGAAAAGAGACTTATATTGGTTTCTTGAAGTCATGGCTGCAGGCGA
AGGAAGCGCCGGTCTTCATAACCAAAAACGACTCCGGCGAAGTGGGTCGG
CACAACGATGGCATGGACGATTTCGACACCTATTCCGCACGCATCTGGAA
GCTTGCCGGTCTCACGGGAGAATCAAGACCCATTTTAAGCACGTTCGAAG
GCAACCCAAAACAGTACGAAAGAAGCCTGAAGCAAGCAAGGGACGGTTCA
TCGGTAATCCCGGTTTATGCTCTGATAGACAACCCGACAAGAATGAAAAT
TCTTCGGGGGGAAGTAGTACCCATCATCAGCAAAATATGTGGAACAACGG
ACGGAGCCGCCAACATGCGCATCTTCGCAGACGAGGCAGATCTTACTTTC
CGTAACAAGGAAACGGTAGGTGCACGACGCTGGACAGATCCATTTGGTGG
ATGGAAGTCTCTGTACGAAGCCTGTTCGTCAATCACCTTCATCACGGCGA
CATCAGGAGCAATCCATCTCAGCGAGAATCGGATGGGTTCCAAGACACAC
GATTTCCAACAAGGCACGACATCGAGCAACTACTGGGATTATCATGACCC
CTCGCAGGAGCTGCCGCCGAACGCCAGGGTGATTTCTCGGGCGGTCGGCG
ATCTCGAATGCATGGTGCGTAAAATGGCCTCGCCAAAGAGTGTACAGTGC
GCACTAGCTATAGAGAGCTCGGTCTCGCACAACCACGACATCGACAAGGA
AGCCAAGCAAGTCGTCGTCAAATACCCAAGGGAAGGGGTGAAAAACTTCG
TATCTCTTGCATGGATGGCGGAACAGCTCCTCGTCTACACGGCGGATGCC
GGTATGAGGAAGGTGTTCGGAAGCGAGACATTCTTCAACGATTACGAGGA
GCTAGGGGAAGAAGAGGTTGTGGAGATCGAGAGAGAGCTACGGAAGGAAG
AGGCGAAGAAGCGCAAGAAAGGAAAGAGGCGGAAGAAAGGAGCGGAAGAG
TGCGAGGAAGAAGAGCCCGAGGAAGAAGAGTCCGATGAGGAGGACCGCGC
GGAAGAAGAGCCCATACGGGTCTTCCGATACACACCTGCTGAGAAAAAAG
ACAGAGACTACCCTCCATTCATCACCTTCCTCCACGACAACATAGAAGAG
GCGAAGAAGCTCAAAAAAGACGCGCAAGAGTCCAAGGAAGAAGAGCTCGA
GTCTGGGCTGGAGCTTGCGGACGTGGTGCCCAAGATACTCACCTTCGCGA
AGGCGGTGGCTGGCAGAGCAAGATCTATCAAGGGAAAGAAGCACGAGTGG
CCACTGGACCATCTTTTTCTGCACTTGCCCAAGATGCACTTCGAAGGCCT
GAGGCAGGCAGCGGGGCGCGCCAACAGCACAGACACTCGAACGACGGGAC
CTACGACGTGGATGAGCGAAGAAATGCAGCTCAAACTCACAAACGCCATC
GTGGTCGACCGGAAATGCAGTGAAATACTGAGGCAAGGGAACACTCCGCT
GCAGTTGGTCAGACACACGCTGACGGAGGTGAAGAGCGCCCCGGAAGGCG
AGGAGGTGGTGGCCAAGTCGGGCGCGTACATGGTCATCGGCCCGAGGGGC
CATACTCGAAACGGTGTGGGTCGTGCATACACCCTTTGCCATGATAAGGT
AACAAGAACTCCGAGGCGCGGGAAGAACAACATCGTGTCGCCGCCCACAG
GAGATGCGATGGACGAGGAGGAGGAGGAGGAGGAAGAAGAGAACGAGGAG
TTGGAGAGAGCATCAGCGGCAGCGGCGGTGGGGGCGGCGGCGGAGTCGGC
GAACGATGCAGCAGAGGGAGGCCCTGAACTAACCCTGGCTGAGTTTATGA
CGAACCACCTGGATGACGTGCTTGACCTCATGGCCCAGGCACTGCTTGAG
CGCAAGGATTCCATGACCGCACGGCAGATGGCGGATGGCATTGCTGGAAG
GACCGGGTACCCTTCTACCAACATACCGTCGCTGGAGGTAGTGAACTACA
TCATTCGCCACAAGGAGAAAGAGATGGAGGACAAAGCATACTTCTTAGGA
GGTGTTTTTCTTCCCTAG
back to top