mRNA_L-digitata_M_contig1002.15.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig1002.15.1
Unique NamemRNA_L-digitata_M_contig1002.15.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig1002.15.1 vs. uniprot
Match: A0A6H5JXI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXI0_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 1.400e-63
Identity = 116/220 (52.73%), Postives = 144/220 (65.45%), Query Frame = -1
Query:    1 MITLSPLYRRITTFSDAIRYLKGNDEHAPSYEEMRILLPENKVTVHTNTNLIKASLENLKLGLPDRGTDVRKVEIAMYVVVLVVDDQDNDGLAKEVC*RFRGIADYDRNVMTKIFSFSICNDRVCTLLDNAIIRKKKRTHRAIEHEFRAEFIVLFFNVAESLVRPGHTLADLGYTAHVTSSGMERAREIIDEHISSIATKCWPCFKMEALNKSRKQNTLF 660
            M + S L +RI+  SDAIR+++G DEHA SY+E+  LLP  + T H N NLIKASLE LK  + D     RKV IA+YV + +  D + DGLA E C RFRG+ +YD  VM KIFS S+C  R   LLDNA++ KK+     I+HE R EFI+L+  V +SLVR G  L DLGY A VT + ME A  I  EH+SSIA K WPCF +EAL K R +N LF
Sbjct:    1 MTSYSDLSQRISVCSDAIRFVRGKDEHASSYQEVIKLLPPVESTKHRNINLIKASLEYLKKSIDDGDNAGRKVSIALYVAIYIGYDDEKDGLANEFCKRFRGLENYDVKVMMKIFSLSLCTGRTVVLLDNAMLPKKRNIKADIDHELRVEFILLYMYVLKSLVRRGEPLTDLGYLAGVTVANMEAAWLISGEHVSSIANKFWPCFNIEALKKPRVKNNLF 220          
BLAST of mRNA_L-digitata_M_contig1002.15.1 vs. uniprot
Match: A0A6H5K2L9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2L9_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 1.030e-61
Identity = 111/206 (53.88%), Postives = 141/206 (68.45%), Query Frame = -1
Query:   31 SPLYRRITTFSDAIRYLKGNDEHAPSYEEMRILLPENKVTVHTNTNLIKASLENLKLGLPDRGTDVRKVEIAMYVVVLVVDDQDNDGLAKEVC*RFRGIADYDRNVMTKIFSFSICNDRVCTLLDNAIIRKKKRTHRAIEHEFRAEFIVLFFNVAESLVRPGHTLADLGYTAHVTSSGMERAREIIDEHISSIATKCWPCFKMEAL 648
            SPL+ RIT  S+AI   K N +H  SYEE+   LP   VT   NT+LIKAS E LKLG  DR T +RKV IA++V V + +D DN+  A+EVC RF+G+ DYDRNVM KI SFS+ NDR+  LLD  +IR++  T  A + EF AEF+++FFN+ E LV+  H L DLGY A+VT   ME+AREII +H+  IA KC PCFK + L
Sbjct:    6 SPLFERITLCSNAILACKENRKHDSSYEEVMQHLPHT-VTGKDNTDLIKASQEYLKLGFVDRDTPIRKVNIALWVAVSLANDHDNNKFAQEVCERFQGLYDYDRNVMEKIISFSMYNDRIGKLLDKVMIRQESNTTPAFDLEFNAEFVLIFFNIMECLVKDKHRLTDLGYAANVTPDDMEKAREIIHKHLDDIAMKCSPCFKKKEL 210          
BLAST of mRNA_L-digitata_M_contig1002.15.1 vs. uniprot
Match: A0A6H5JJK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK7_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 2.230e-56
Identity = 109/224 (48.66%), Postives = 145/224 (64.73%), Query Frame = -1
Query:    1 SPLYRRITTFSDAIRY-LKGNDEHAPS---YEEMRILLPENKVTVHTNTNLIKASLENLKLGLPDRGTDVRKVEIAMYVVVLVVDDQDNDG--LAKEVC*RFRGIADYDRNVMTKIFSFSICNDRVCTLLDNAII--RKKKRTHRAIEHEFRAEFIVLFFNVAESLVRPGHTLADLGYTAHVTSSGMERAREIIDEHISSIATKCWPCFKMEALNKSRKQNTLF 648
            S L +RI T +DA+R+ L+G D +  S   YEE+   LP  K T +TNTNL+KA++E LK       T  RK+ IA+YV + V  D D+D   LAKE C RF+ + +YD+++MTKIF+ S+CNDR+  LLD      +KKK     I+HEFR EF++L+FNV +SLV  G +L D GY A +T+  +E A +  D H+SSIA K WPCFKMEAL K R  N LF
Sbjct:    5 SELSKRIGTCADAVRFVLRGKDGYPSSQESYEEVIQYLPAEKATGYTNTNLVKAAVEYLKKSFATSDTSDRKISIALYVAIYVGHDHDHDDGVLAKEFCKRFQDVENYDKHMMTKIFNMSLCNDRILALLDAVTSSGKKKKDVIALIDHEFRVEFVLLYFNVVKSLVLRGQSLTDFGYPAELTADDVEAAEKTFDNHVSSIANKYWPCFKMEALKKPRVVNNLF 228          
BLAST of mRNA_L-digitata_M_contig1002.15.1 vs. uniprot
Match: Q8QNC8_ESV1K (EsV-1-154 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNC8_ESV1K)

HSP 1 Score: 174 bits (442), Expect = 1.650e-48
Identity = 104/233 (44.64%), Postives = 142/233 (60.94%), Query Frame = -1
Query:    1 MITLSPLYRRITTFSDAIRYLK----GNDEHAPSYEEMRILLPENKVTVHTNT---------NLIKASLENLKLGLPDRGTDVRKVEIAMYVVVLVVDDQDNDGLAKEVC*RFRGIADYDRNVMTKIFSFSICNDRVCTLLDNAIIRKKKRTHRAIEHEFRAEFIVLFFNVAESLVRPGHTLADLGYTAHVTSSGMERAREIIDEHISSIATKCWPCFKMEALNKSRKQNTLF 660
            M T SPL++RI   S+AIR+ K    GN  H+ S++E+     E    +H NT         ++ +A+LE +K G      D  K + A+Y+ +LV  D   +GLAKEVC RFR + D+DR+ M +IF  S+CNDRV  +LDN +I K + T    EH F  EF+ +FFN  E +VR  HTLADLGYT++VTS+ M+ AREI+D H+  IAT+C PCF+   L   RK N LF
Sbjct:    1 MATSSPLFKRIMACSNAIRHHKNEKIGNVRHS-SHDEVSSY-DEVVKFIHGNTPVSELPRTKDVTRAALEYMKRGW--HSPDDAKAKFALYLAILVAYDNAENGLAKEVCDRFRCVYDFDRHAMEQIFKISLCNDRVRKVLDNLLISKTEGT-LVFEHVFNMEFVEIFFNGMEMVVRDMHTLADLGYTSNVTSTDMKLAREIMDNHLGEIATRCSPCFQRNVLRLPRKNNNLF 228          
BLAST of mRNA_L-digitata_M_contig1002.15.1 vs. uniprot
Match: D8LPH6_ECTSI (EsV-1-154 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPH6_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 3.450e-47
Identity = 104/231 (45.02%), Postives = 140/231 (60.61%), Query Frame = -1
Query:    1 MITLSPLYRRITTFSDAIRYLK----GNDEHAP-----SYEEM-RILLPENKVTVHTNT-NLIKASLENLKLGLPDRGTDVRKVEIAMYVVVLVVDDQDNDGLAKEVC*RFRGIADYDRNVMTKIFSFSICNDRVCTLLDNAIIRKKKRTHRAIEHEFRAEFIVLFFNVAESLVRPGHTLADLGYTAHVTSSGMERAREIIDEHISSIATKCWPCFKMEALNKSRKQNTLF 660
            M T  PL++RI   S+AIR+ K    GN  H+      SY+E+ + +     V     T ++ +A+LE +K G   R  D  K + A+Y+ +LV DD   +GLAKEVC RFR I D+DR+VM  IF  S+CNDRV  LLDN +I K + T    EH F  EF+ +FFN  E +V   HTLADLGY + VT++ M+ AREI+D H+  IAT+C PCF+ + L   RK N LF
Sbjct:    1 MATSFPLFKRIMVCSNAIRHHKNEKNGNARHSSHDEVSSYDEVVKFMCSNTSVGERPRTKDVTRAALEFMKRGW-HRPQDA-KAKFALYLAILVADDNAENGLAKEVCDRFRRIHDFDRHVMEHIFKISLCNDRVRKLLDNLLISKTEGT-LVFEHVFNMEFVEIFFNGMEMVVGDMHTLADLGYASIVTATDMKLAREIMDRHLGEIATRCSPCFQKDVLRLPRKNNNLF 228          
BLAST of mRNA_L-digitata_M_contig1002.15.1 vs. uniprot
Match: A0A6H5K7U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U4_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.090e-41
Identity = 81/188 (43.09%), Postives = 116/188 (61.70%), Query Frame = -1
Query:    1 MRILLPENKVTVHTNTNLIKASLENLKLGLPDRGTDVRKVEIAMYVVVLVVDD-QDNDGLAKEVC*RFRGIADYDRNVMTKIFSFSICNDRVCTLLDNAIIRKKKRTHRAIEHEFRAEFIVLFFNVAESLVRPGHTLADLGYTAHVTSSGMERAREIIDEHISSIATKCWPCFKMEALNKSRKQNTLF 561
            MR L    K+  +  T L KA +E ++     R T  RK++IA+ VVV +  D  + DGL K +  RFRG+ DYD   M+ +F+ SI NDR   LLD  +I KK+   R I+HEFR E+++++F + ES +R G  L DLGY  H T S M++ARE +++H+S IAT+C PCF +EA   +R +  LF
Sbjct:    1 MRSLPRGMKMPKNEKTKLTKACMEYIRGAFAKRETPDRKLKIAICVVVSIASDLAETDGLTKAIRDRFRGLDDYDHRAMSDVFNLSILNDRALALLDKVMILKKENVRRDIQHEFRVEYVLIYFGILESALRRGEALDDLGYVTHATPSDMKKARETLEKHVSLIATRCGPCFHLEAAKNARPRINLF 188          
BLAST of mRNA_L-digitata_M_contig1002.15.1 vs. uniprot
Match: Q8QND1_ESV1K (EsV-1-151 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QND1_ESV1K)

HSP 1 Score: 151 bits (382), Expect = 1.350e-39
Identity = 89/228 (39.04%), Postives = 134/228 (58.77%), Query Frame = -1
Query:    7 MITLSPLYRRITTFSDAIRYLKGN-----DEHAPSYEEMRILLPENKVTVHTNTNLIKASLENLKLGLPDRGTDV--RKVEIAMYVVVLVVDDQDN-DGLAKEVC*RFRGIADYDRNVMTKIFSFSICNDRVCTLLDNAIIRKKKR-THRAIEHEFRAEFIVLFFNVAESLVRPGHTLADLGYT-AHVTSSGMERAREIIDEHISSIATKCWPCFKMEALNKSRKQNT 660
            M T + L+ RITT S A+R+ +G+     + H  SY  +    PE          L KA+   L+ G P  G +V  RKVEIAM V   + + +D  DGL K +C RFRG+ D+DR VM K+FS S+C+D V TLLDN ++ K+K+   R +E E +AEF+++FF++  ++++ G + +DLGY  A  T+  M  AR  ++ H + IA +C  CF++EA    R + T
Sbjct:    1 MTTPTKLFERITTCSLALRHGRGDGGEHREHHEASYRRVLGSRPE--------AQLAKAAKSFLRSGFPSGGGNVSDRKVEIAMCVATSIAEGRDREDGLVKAICDRFRGLEDFDRRVMKKVFSLSLCSDSVLTLLDNIMVSKRKKGVLREVERELQAEFVLMFFDILANILKRGESSSDLGYVVAGATAEDMGNARATLERHAAVIADRCCACFRLEAFKVPRPRLT 220          
BLAST of mRNA_L-digitata_M_contig1002.15.1 vs. uniprot
Match: D8LPH3_ECTSI (EsV-1-151 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPH3_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 6.080e-34
Identity = 83/224 (37.05%), Postives = 127/224 (56.70%), Query Frame = -1
Query:    4 MITLSPLYRRITTFSDAIRYL-KGNDEHAPSYEEMRILLPENKVTVHTNTNLIKASLENLKLGLPDRGTDV--RKVEIAMYVVVLVVDDQDN-DGLAKEVC*RFRGIADYDRNVMTKIFSFSICNDRVCTLLDNAIIRKKKRTHRAIEHEFRAEFIVLFFNVAESLVRPGHTLADLGYT-AHVTSSGMERAREIIDEHISSIATKCWPCFKMEALNKSRKQNTL 660
            MIT + L+  ITT S A+R+  +  ++H  SY  +   LP        +T L KA+   ++ G P  G     RKVEIAM V   +   +D  D L K +C RFRG+ D+DR VM KIFS S+C+D V  LLD  ++ K K+    +E E R EF+++FF++  ++V+ G + +DLGY  A  T+  M  AR  +++H + +A K   CF+++A    R + T+
Sbjct:    1 MITPTKLFESITTCSLALRHGGQHGEDHESSYRRVMGSLP--------HTKLAKAAKSFIRAGFPAVGGKASDRKVEIAMCVATSIAQGRDGEDRLVKSICDRFRGMEDFDRRVMKKIFSLSVCSDSVLALLDEVMVLKTKKGD--VERELRVEFVLMFFDILANMVKRGESSSDLGYVVAGATAEDMSNARATLEKHAALLADKYGACFRLKAFKIPRPRLTI 214          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig1002.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JXI0_9PHAE1.400e-6352.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2L9_9PHAE1.030e-6153.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJK7_9PHAE2.230e-5648.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q8QNC8_ESV1K1.650e-4844.64EsV-1-154 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPH6_ECTSI3.450e-4745.02EsV-1-154 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5K7U4_9PHAE1.090e-4143.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q8QND1_ESV1K1.350e-3939.04EsV-1-151 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPH3_ECTSI6.080e-3437.05EsV-1-151 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig1002contigL-digitata_M_contig1002:19450..20151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size702
Hectar predicted targeting categoryother localisation
Exons1
Cds size507
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406604.5903242-UTR-L-digitata_M_contig1002:19449..196081682406604.5903242-UTR-L-digitata_M_contig1002:19449..19608Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig1002 19450..19608 +
1682406604.6215854-UTR-L-digitata_M_contig1002:20115..201511682406604.6215854-UTR-L-digitata_M_contig1002:20115..20151Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig1002 20116..20151 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406604.609057-CDS-L-digitata_M_contig1002:19608..201151682406604.609057-CDS-L-digitata_M_contig1002:19608..20115Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1002 19609..20115 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig1002.15.1prot_L-digitata_M_contig1002.15.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig1002 19609..20115 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig1002.15.1

>prot_L-digitata_M_contig1002.15.1 ID=prot_L-digitata_M_contig1002.15.1|Name=mRNA_L-digitata_M_contig1002.15.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=169bp
MSGAHKTLRHIKKEHDELGTEFVFNRTVSSLLLANDGIVEQSTNSVVADG
KTEDLRHHVPIVVSYSTKALADLFRKPVVVLIVHNQHDDIHGDFDLANIS
AAIGKPQLQVLQRCFDQIGVRVHGDLVLREEYSHFFVGWCMLVVSLEVSD
RIGEGCDPSIQRRQRNHG*
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mRNA from alignment at L-digitata_M_contig1002:19450..20151+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig1002.15.1 ID=mRNA_L-digitata_M_contig1002.15.1|Name=mRNA_L-digitata_M_contig1002.15.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=702bp|location=Sequence derived from alignment at L-digitata_M_contig1002:19450..20151+ (Laminaria digitata LdigPH10_18mv male)
AAACAGGGTGTTTTGCTTGCGTGATTTATTCAAAGCCTCCATCTTGAAAC ACGGCCAACACTTGGTGGCTATCGATGAAATGTGCTCGTCGATAATCTCC CGCGCACGTTCCATGCCAGAGGATGTAACGTGTGCCGTGTAACCCAGGTC AGCCAGTGTATGTCCGGGGCGCACAAGACTCTCCGCCACATTAAAAAAGA GCACGATGAACTCGGCACGGAATTCGTGTTCAATCGCACGGTGAGTTCTC TTCTTCTTGCGAATGATGGCATTGTCGAGCAGAGTACAAACTCTGTCGTT GCAGATGGAAAAACTGAAGATCTTCGTCATCACGTTCCGATCGTAGTCAG CTATTCCACGAAAGCGTTAGCAGACCTCTTTCGCAAGCCCGTCGTTGTCC TGATCGTCCACAACCAACACGACGACATACATGGCGATTTCGACCTTGCG AACATCAGTGCCGCGATCGGGAAGCCCCAGCTTCAAGTTCTCCAGAGATG CTTTGATCAGATTGGTGTTCGTGTGCACGGTGACCTTGTTCTCAGGGAGG AGTATTCTCATTTCTTCGTAGGATGGTGCATGCTCGTCGTTTCCCTTGAG GTATCGGATCGCATCGGAGAAGGTTGTGATCCTTCTATACAGCGGCGACA ACGTAATCATGGCTGAAGCGGAAGCGGGATGAAGTGTGACTTGGGAGCGT GC
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Coding sequence (CDS) from alignment at L-digitata_M_contig1002:19450..20151+

>mRNA_L-digitata_M_contig1002.15.1 ID=mRNA_L-digitata_M_contig1002.15.1|Name=mRNA_L-digitata_M_contig1002.15.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=507bp|location=Sequence derived from alignment at L-digitata_M_contig1002:19450..20151+ (Laminaria digitata LdigPH10_18mv male)
ATGTCCGGGGCGCACAAGACTCTCCGCCACATTAAAAAAGAGCACGATGA
ACTCGGCACGGAATTCGTGTTCAATCGCACGGTGAGTTCTCTTCTTCTTG
CGAATGATGGCATTGTCGAGCAGAGTACAAACTCTGTCGTTGCAGATGGA
AAAACTGAAGATCTTCGTCATCACGTTCCGATCGTAGTCAGCTATTCCAC
GAAAGCGTTAGCAGACCTCTTTCGCAAGCCCGTCGTTGTCCTGATCGTCC
ACAACCAACACGACGACATACATGGCGATTTCGACCTTGCGAACATCAGT
GCCGCGATCGGGAAGCCCCAGCTTCAAGTTCTCCAGAGATGCTTTGATCA
GATTGGTGTTCGTGTGCACGGTGACCTTGTTCTCAGGGAGGAGTATTCTC
ATTTCTTCGTAGGATGGTGCATGCTCGTCGTTTCCCTTGAGGTATCGGAT
CGCATCGGAGAAGGTTGTGATCCTTCTATACAGCGGCGACAACGTAATCA
TGGCTGA
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