mRNA_L-digitata_M_contig1002.15.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig1002.15.1 vs. uniprot
Match: A0A6H5JXI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXI0_9PHAE) HSP 1 Score: 218 bits (555), Expect = 1.400e-63 Identity = 116/220 (52.73%), Postives = 144/220 (65.45%), Query Frame = -1
Query: 1 MITLSPLYRRITTFSDAIRYLKGNDEHAPSYEEMRILLPENKVTVHTNTNLIKASLENLKLGLPDRGTDVRKVEIAMYVVVLVVDDQDNDGLAKEVC*RFRGIADYDRNVMTKIFSFSICNDRVCTLLDNAIIRKKKRTHRAIEHEFRAEFIVLFFNVAESLVRPGHTLADLGYTAHVTSSGMERAREIIDEHISSIATKCWPCFKMEALNKSRKQNTLF 660
M + S L +RI+ SDAIR+++G DEHA SY+E+ LLP + T H N NLIKASLE LK + D RKV IA+YV + + D + DGLA E C RFRG+ +YD VM KIFS S+C R LLDNA++ KK+ I+HE R EFI+L+ V +SLVR G L DLGY A VT + ME A I EH+SSIA K WPCF +EAL K R +N LF
Sbjct: 1 MTSYSDLSQRISVCSDAIRFVRGKDEHASSYQEVIKLLPPVESTKHRNINLIKASLEYLKKSIDDGDNAGRKVSIALYVAIYIGYDDEKDGLANEFCKRFRGLENYDVKVMMKIFSLSLCTGRTVVLLDNAMLPKKRNIKADIDHELRVEFILLYMYVLKSLVRRGEPLTDLGYLAGVTVANMEAAWLISGEHVSSIANKFWPCFNIEALKKPRVKNNLF 220
BLAST of mRNA_L-digitata_M_contig1002.15.1 vs. uniprot
Match: A0A6H5K2L9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2L9_9PHAE) HSP 1 Score: 209 bits (532), Expect = 1.030e-61 Identity = 111/206 (53.88%), Postives = 141/206 (68.45%), Query Frame = -1
Query: 31 SPLYRRITTFSDAIRYLKGNDEHAPSYEEMRILLPENKVTVHTNTNLIKASLENLKLGLPDRGTDVRKVEIAMYVVVLVVDDQDNDGLAKEVC*RFRGIADYDRNVMTKIFSFSICNDRVCTLLDNAIIRKKKRTHRAIEHEFRAEFIVLFFNVAESLVRPGHTLADLGYTAHVTSSGMERAREIIDEHISSIATKCWPCFKMEAL 648
SPL+ RIT S+AI K N +H SYEE+ LP VT NT+LIKAS E LKLG DR T +RKV IA++V V + +D DN+ A+EVC RF+G+ DYDRNVM KI SFS+ NDR+ LLD +IR++ T A + EF AEF+++FFN+ E LV+ H L DLGY A+VT ME+AREII +H+ IA KC PCFK + L
Sbjct: 6 SPLFERITLCSNAILACKENRKHDSSYEEVMQHLPHT-VTGKDNTDLIKASQEYLKLGFVDRDTPIRKVNIALWVAVSLANDHDNNKFAQEVCERFQGLYDYDRNVMEKIISFSMYNDRIGKLLDKVMIRQESNTTPAFDLEFNAEFVLIFFNIMECLVKDKHRLTDLGYAANVTPDDMEKAREIIHKHLDDIAMKCSPCFKKKEL 210
BLAST of mRNA_L-digitata_M_contig1002.15.1 vs. uniprot
Match: A0A6H5JJK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK7_9PHAE) HSP 1 Score: 201 bits (510), Expect = 2.230e-56 Identity = 109/224 (48.66%), Postives = 145/224 (64.73%), Query Frame = -1
Query: 1 SPLYRRITTFSDAIRY-LKGNDEHAPS---YEEMRILLPENKVTVHTNTNLIKASLENLKLGLPDRGTDVRKVEIAMYVVVLVVDDQDNDG--LAKEVC*RFRGIADYDRNVMTKIFSFSICNDRVCTLLDNAII--RKKKRTHRAIEHEFRAEFIVLFFNVAESLVRPGHTLADLGYTAHVTSSGMERAREIIDEHISSIATKCWPCFKMEALNKSRKQNTLF 648
S L +RI T +DA+R+ L+G D + S YEE+ LP K T +TNTNL+KA++E LK T RK+ IA+YV + V D D+D LAKE C RF+ + +YD+++MTKIF+ S+CNDR+ LLD +KKK I+HEFR EF++L+FNV +SLV G +L D GY A +T+ +E A + D H+SSIA K WPCFKMEAL K R N LF
Sbjct: 5 SELSKRIGTCADAVRFVLRGKDGYPSSQESYEEVIQYLPAEKATGYTNTNLVKAAVEYLKKSFATSDTSDRKISIALYVAIYVGHDHDHDDGVLAKEFCKRFQDVENYDKHMMTKIFNMSLCNDRILALLDAVTSSGKKKKDVIALIDHEFRVEFVLLYFNVVKSLVLRGQSLTDFGYPAELTADDVEAAEKTFDNHVSSIANKYWPCFKMEALKKPRVVNNLF 228
BLAST of mRNA_L-digitata_M_contig1002.15.1 vs. uniprot
Match: Q8QNC8_ESV1K (EsV-1-154 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNC8_ESV1K) HSP 1 Score: 174 bits (442), Expect = 1.650e-48 Identity = 104/233 (44.64%), Postives = 142/233 (60.94%), Query Frame = -1
Query: 1 MITLSPLYRRITTFSDAIRYLK----GNDEHAPSYEEMRILLPENKVTVHTNT---------NLIKASLENLKLGLPDRGTDVRKVEIAMYVVVLVVDDQDNDGLAKEVC*RFRGIADYDRNVMTKIFSFSICNDRVCTLLDNAIIRKKKRTHRAIEHEFRAEFIVLFFNVAESLVRPGHTLADLGYTAHVTSSGMERAREIIDEHISSIATKCWPCFKMEALNKSRKQNTLF 660
M T SPL++RI S+AIR+ K GN H+ S++E+ E +H NT ++ +A+LE +K G D K + A+Y+ +LV D +GLAKEVC RFR + D+DR+ M +IF S+CNDRV +LDN +I K + T EH F EF+ +FFN E +VR HTLADLGYT++VTS+ M+ AREI+D H+ IAT+C PCF+ L RK N LF
Sbjct: 1 MATSSPLFKRIMACSNAIRHHKNEKIGNVRHS-SHDEVSSY-DEVVKFIHGNTPVSELPRTKDVTRAALEYMKRGW--HSPDDAKAKFALYLAILVAYDNAENGLAKEVCDRFRCVYDFDRHAMEQIFKISLCNDRVRKVLDNLLISKTEGT-LVFEHVFNMEFVEIFFNGMEMVVRDMHTLADLGYTSNVTSTDMKLAREIMDNHLGEIATRCSPCFQRNVLRLPRKNNNLF 228
BLAST of mRNA_L-digitata_M_contig1002.15.1 vs. uniprot
Match: D8LPH6_ECTSI (EsV-1-154 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPH6_ECTSI) HSP 1 Score: 171 bits (433), Expect = 3.450e-47 Identity = 104/231 (45.02%), Postives = 140/231 (60.61%), Query Frame = -1
Query: 1 MITLSPLYRRITTFSDAIRYLK----GNDEHAP-----SYEEM-RILLPENKVTVHTNT-NLIKASLENLKLGLPDRGTDVRKVEIAMYVVVLVVDDQDNDGLAKEVC*RFRGIADYDRNVMTKIFSFSICNDRVCTLLDNAIIRKKKRTHRAIEHEFRAEFIVLFFNVAESLVRPGHTLADLGYTAHVTSSGMERAREIIDEHISSIATKCWPCFKMEALNKSRKQNTLF 660
M T PL++RI S+AIR+ K GN H+ SY+E+ + + V T ++ +A+LE +K G R D K + A+Y+ +LV DD +GLAKEVC RFR I D+DR+VM IF S+CNDRV LLDN +I K + T EH F EF+ +FFN E +V HTLADLGY + VT++ M+ AREI+D H+ IAT+C PCF+ + L RK N LF
Sbjct: 1 MATSFPLFKRIMVCSNAIRHHKNEKNGNARHSSHDEVSSYDEVVKFMCSNTSVGERPRTKDVTRAALEFMKRGW-HRPQDA-KAKFALYLAILVADDNAENGLAKEVCDRFRRIHDFDRHVMEHIFKISLCNDRVRKLLDNLLISKTEGT-LVFEHVFNMEFVEIFFNGMEMVVGDMHTLADLGYASIVTATDMKLAREIMDRHLGEIATRCSPCFQKDVLRLPRKNNNLF 228
BLAST of mRNA_L-digitata_M_contig1002.15.1 vs. uniprot
Match: A0A6H5K7U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U4_9PHAE) HSP 1 Score: 158 bits (400), Expect = 1.090e-41 Identity = 81/188 (43.09%), Postives = 116/188 (61.70%), Query Frame = -1
Query: 1 MRILLPENKVTVHTNTNLIKASLENLKLGLPDRGTDVRKVEIAMYVVVLVVDD-QDNDGLAKEVC*RFRGIADYDRNVMTKIFSFSICNDRVCTLLDNAIIRKKKRTHRAIEHEFRAEFIVLFFNVAESLVRPGHTLADLGYTAHVTSSGMERAREIIDEHISSIATKCWPCFKMEALNKSRKQNTLF 561
MR L K+ + T L KA +E ++ R T RK++IA+ VVV + D + DGL K + RFRG+ DYD M+ +F+ SI NDR LLD +I KK+ R I+HEFR E+++++F + ES +R G L DLGY H T S M++ARE +++H+S IAT+C PCF +EA +R + LF
Sbjct: 1 MRSLPRGMKMPKNEKTKLTKACMEYIRGAFAKRETPDRKLKIAICVVVSIASDLAETDGLTKAIRDRFRGLDDYDHRAMSDVFNLSILNDRALALLDKVMILKKENVRRDIQHEFRVEYVLIYFGILESALRRGEALDDLGYVTHATPSDMKKARETLEKHVSLIATRCGPCFHLEAAKNARPRINLF 188
BLAST of mRNA_L-digitata_M_contig1002.15.1 vs. uniprot
Match: Q8QND1_ESV1K (EsV-1-151 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QND1_ESV1K) HSP 1 Score: 151 bits (382), Expect = 1.350e-39 Identity = 89/228 (39.04%), Postives = 134/228 (58.77%), Query Frame = -1
Query: 7 MITLSPLYRRITTFSDAIRYLKGN-----DEHAPSYEEMRILLPENKVTVHTNTNLIKASLENLKLGLPDRGTDV--RKVEIAMYVVVLVVDDQDN-DGLAKEVC*RFRGIADYDRNVMTKIFSFSICNDRVCTLLDNAIIRKKKR-THRAIEHEFRAEFIVLFFNVAESLVRPGHTLADLGYT-AHVTSSGMERAREIIDEHISSIATKCWPCFKMEALNKSRKQNT 660
M T + L+ RITT S A+R+ +G+ + H SY + PE L KA+ L+ G P G +V RKVEIAM V + + +D DGL K +C RFRG+ D+DR VM K+FS S+C+D V TLLDN ++ K+K+ R +E E +AEF+++FF++ ++++ G + +DLGY A T+ M AR ++ H + IA +C CF++EA R + T
Sbjct: 1 MTTPTKLFERITTCSLALRHGRGDGGEHREHHEASYRRVLGSRPE--------AQLAKAAKSFLRSGFPSGGGNVSDRKVEIAMCVATSIAEGRDREDGLVKAICDRFRGLEDFDRRVMKKVFSLSLCSDSVLTLLDNIMVSKRKKGVLREVERELQAEFVLMFFDILANILKRGESSSDLGYVVAGATAEDMGNARATLERHAAVIADRCCACFRLEAFKVPRPRLT 220
BLAST of mRNA_L-digitata_M_contig1002.15.1 vs. uniprot
Match: D8LPH3_ECTSI (EsV-1-151 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPH3_ECTSI) HSP 1 Score: 135 bits (341), Expect = 6.080e-34 Identity = 83/224 (37.05%), Postives = 127/224 (56.70%), Query Frame = -1
Query: 4 MITLSPLYRRITTFSDAIRYL-KGNDEHAPSYEEMRILLPENKVTVHTNTNLIKASLENLKLGLPDRGTDV--RKVEIAMYVVVLVVDDQDN-DGLAKEVC*RFRGIADYDRNVMTKIFSFSICNDRVCTLLDNAIIRKKKRTHRAIEHEFRAEFIVLFFNVAESLVRPGHTLADLGYT-AHVTSSGMERAREIIDEHISSIATKCWPCFKMEALNKSRKQNTL 660
MIT + L+ ITT S A+R+ + ++H SY + LP +T L KA+ ++ G P G RKVEIAM V + +D D L K +C RFRG+ D+DR VM KIFS S+C+D V LLD ++ K K+ +E E R EF+++FF++ ++V+ G + +DLGY A T+ M AR +++H + +A K CF+++A R + T+
Sbjct: 1 MITPTKLFESITTCSLALRHGGQHGEDHESSYRRVMGSLP--------HTKLAKAAKSFIRAGFPAVGGKASDRKVEIAMCVATSIAQGRDGEDRLVKSICDRFRGMEDFDRRVMKKIFSLSVCSDSVLALLDEVMVLKTKKGD--VERELRVEFVLMFFDILANMVKRGESSSDLGYVVAGATAEDMSNARATLEKHAALLADKYGACFRLKAFKIPRPRLTI 214 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig1002.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig1002.15.1 >prot_L-digitata_M_contig1002.15.1 ID=prot_L-digitata_M_contig1002.15.1|Name=mRNA_L-digitata_M_contig1002.15.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=169bp MSGAHKTLRHIKKEHDELGTEFVFNRTVSSLLLANDGIVEQSTNSVVADGback to top mRNA from alignment at L-digitata_M_contig1002:19450..20151+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig1002.15.1 ID=mRNA_L-digitata_M_contig1002.15.1|Name=mRNA_L-digitata_M_contig1002.15.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=702bp|location=Sequence derived from alignment at L-digitata_M_contig1002:19450..20151+ (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig1002:19450..20151+ >mRNA_L-digitata_M_contig1002.15.1 ID=mRNA_L-digitata_M_contig1002.15.1|Name=mRNA_L-digitata_M_contig1002.15.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=507bp|location=Sequence derived from alignment at L-digitata_M_contig1002:19450..20151+ (Laminaria digitata LdigPH10_18mv male)back to top |