mRNA_L-digitata_M_contig10019.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10019.1.1
Unique NamemRNA_L-digitata_M_contig10019.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10019.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10019contigL-digitata_M_contig10019:3574..4170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size291
Hectar predicted targeting categoryother localisation
Exons2
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406604.4185798-CDS-L-digitata_M_contig10019:3573..38291682406604.4185798-CDS-L-digitata_M_contig10019:3573..3829Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10019 3574..3829 -
1682406604.4277782-CDS-L-digitata_M_contig10019:4135..41701682406604.4277782-CDS-L-digitata_M_contig10019:4135..4170Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10019 4136..4170 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10019.1.1prot_L-digitata_M_contig10019.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10019 3574..4170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10019.1.1

>prot_L-digitata_M_contig10019.1.1 ID=prot_L-digitata_M_contig10019.1.1|Name=mRNA_L-digitata_M_contig10019.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=97bp
RKERSAFPGVTGNGASTSTGRPSQKTSGRPGAEQPRHRSGLLRVYFVLVR
GTRHTQREITIQIRCSLLLFIVDNVHGCESRAIGERRRVCAGRGVR*
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mRNA from alignment at L-digitata_M_contig10019:3574..4170-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10019.1.1 ID=mRNA_L-digitata_M_contig10019.1.1|Name=mRNA_L-digitata_M_contig10019.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=597bp|location=Sequence derived from alignment at L-digitata_M_contig10019:3574..4170- (Laminaria digitata LdigPH10_18mv male)
AGAAAAGAGCGCTCGGCGTTTCCGGGCGTAACAGGGTGAGGCAAGCTCTG
ACGGTCTTGAAATGACGTACACGTTAGCAGCATACGCGGGGTGTCCCGTC
TGTGGGTGTTCTTGCATCGCAGTCACATTCCTACAGCAGAAACGACCTTC
ACCAGCACCGGTTTTTGCTCATTCGAAGATGACGAGAAATATGACTGGTA
TTCTCGCCACAATTCAAACCCACAAAGTATCTATCCCACTACCCCATTGA
TGCACCTCTGATGTACGAGTACCTCGATGCACTGGCGACATGCACTCACA
TGTTGACCTTCCCCATGCCGTACAAATATGTGGGTTAGCAGGAACGGAGC
CAGCACGAGCACCGGGCGACCAAGTCAGAAGACCTCAGGCAGGCCTGGCG
CAGAGCAACCGCGCCACCGGAGTGGACTGCTACGAGTATATTTTGTGCTT
GTCCGAGGCACGAGACATACACAAAGAGAGATAACGATACAAATTCGTTG
TTCACTACTGCTGTTCATTGTCGACAATGTCCATGGCTGTGAAAGCAGAG
CGATCGGAGAGCGGAGGAGGGTCTGCGCCGGACGGGGGGTTCGGTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig10019:3574..4170-

>mRNA_L-digitata_M_contig10019.1.1 ID=mRNA_L-digitata_M_contig10019.1.1|Name=mRNA_L-digitata_M_contig10019.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=291bp|location=Sequence derived from alignment at L-digitata_M_contig10019:3574..4170- (Laminaria digitata LdigPH10_18mv male)
AGAAAAGAGCGCTCGGCGTTTCCGGGCGTAACAGGGAACGGAGCCAGCAC
GAGCACCGGGCGACCAAGTCAGAAGACCTCAGGCAGGCCTGGCGCAGAGC
AACCGCGCCACCGGAGTGGACTGCTACGAGTATATTTTGTGCTTGTCCGA
GGCACGAGACATACACAAAGAGAGATAACGATACAAATTCGTTGTTCACT
ACTGCTGTTCATTGTCGACAATGTCCATGGCTGTGAAAGCAGAGCGATCG
GAGAGCGGAGGAGGGTCTGCGCCGGACGGGGGGTTCGGTAG
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