mRNA_L-digitata_M_contig100182.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100182.1.1
Unique NamemRNA_L-digitata_M_contig100182.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100182.1.1 vs. uniprot
Match: D8LBJ6_ECTSI (Aspartate/glutamate/uridylate kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBJ6_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 4.300e-22
Identity = 47/52 (90.38%), Postives = 48/52 (92.31%), Query Frame = 1
Query:    1 RWLLLAGETEGVFGADGACVAEISPATLPSIEGSLGGSRGTDVTGGMASKVR 156
            RWLLLAGETEGVFG DGACV EIS  +LPSIEGSLGGSRGTDVTGGMASKVR
Sbjct:   74 RWLLLAGETEGVFGGDGACVPEISLESLPSIEGSLGGSRGTDVTGGMASKVR 125          
BLAST of mRNA_L-digitata_M_contig100182.1.1 vs. uniprot
Match: A0A6H5JTJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTJ8_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.040e-20
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 1
Query:    1 RWLLLAGETEGVFGADGACVAEISPATLPSIEGSLGGSRGTDVTGGMASKVR 156
            RWLLLAGETEGV G DGACV EIS  +LPSIEGSLGGSRGTDVTGGMASKVR
Sbjct:  130 RWLLLAGETEGVLGGDGACVPEISLESLPSIEGSLGGSRGTDVTGGMASKVR 181          
BLAST of mRNA_L-digitata_M_contig100182.1.1 vs. uniprot
Match: A0A7C3H372_9CHLR (Isopentenyl phosphate kinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C3H372_9CHLR)

HSP 1 Score: 70.9 bits (172), Expect = 2.310e-13
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    4 WLLLAGETEGVFGADGACVAEISPATLPSIEGSLGGSRGTDVTGGMASKVR 156
            WLLLAGETEGV    G  +  I P TLP +E +LGGSRGTDVTGGMA+KVR
Sbjct:  171 WLLLAGETEGVLDLAGQVIPRIMPETLPQVEAALGGSRGTDVTGGMAAKVR 221          
BLAST of mRNA_L-digitata_M_contig100182.1.1 vs. uniprot
Match: A0A6L3F9Z2_9CHLR (Isopentenyl phosphate kinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L3F9Z2_9CHLR)

HSP 1 Score: 63.5 bits (153), Expect = 1.200e-10
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:    4 WLLLAGETEGVFGADGACVAEISPATLPSIEGSLGGSRGTDVTGGMASKV 153
            WLLLAGET GV   +G  + +I+  +LP I  +LGGSRGTDVTGGMASKV
Sbjct:  172 WLLLAGETAGVLDQNGTIIPKITRESLPEIASALGGSRGTDVTGGMASKV 221          
BLAST of mRNA_L-digitata_M_contig100182.1.1 vs. uniprot
Match: A0A2E0ZCB3_9CHLR (Isopentenyl phosphate kinase n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A2E0ZCB3_9CHLR)

HSP 1 Score: 62.4 bits (150), Expect = 3.850e-10
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    4 WLLLAGETEGVFGADGACVAEISPATLPSIEGSLGGSRGTDVTGGMASKVR 156
            WLLLAGET GV+  +   ++ IS A    IE +LGGSRGTDVTGGMASKV+
Sbjct:  198 WLLLAGETTGVYDLEEQVISRISRANYAEIEAALGGSRGTDVTGGMASKVQ 248          
BLAST of mRNA_L-digitata_M_contig100182.1.1 vs. uniprot
Match: A0A7Y5Q9D0_9CHLR (Isopentenyl phosphate kinase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7Y5Q9D0_9CHLR)

HSP 1 Score: 62.0 bits (149), Expect = 4.370e-10
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:    7 LLLAGETEGVFGADGACVAEISPATLPSIEGSLGGSRGTDVTGGMASKVR 156
            +LL G+ +GVF   GA +  I+PA LP IE +LGGS GTDVTGGMA+KVR
Sbjct:  173 ILLLGDVDGVFDQTGAIIPVITPALLPQIEAALGGSAGTDVTGGMAAKVR 222          
BLAST of mRNA_L-digitata_M_contig100182.1.1 vs. uniprot
Match: A0A0S8AVD4_9CHLR (Isopentenyl phosphate kinase n=1 Tax=Anaerolineae bacterium SG8_19 TaxID=1703386 RepID=A0A0S8AVD4_9CHLR)

HSP 1 Score: 60.8 bits (146), Expect = 1.210e-9
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:    4 WLLLAGETEGVFGADGACVAEISPATLPSIEGSLGGSRGTDVTGGMASKV 153
            WLLLAGETEGV   DG  +  I+ + +  I+  L GSRGTDVTGGMASKV
Sbjct:  174 WLLLAGETEGVLSDDGRIIPLITKSNIGQIQNQLSGSRGTDVTGGMASKV 223          
BLAST of mRNA_L-digitata_M_contig100182.1.1 vs. uniprot
Match: A0A160T015_9CHLR (Isopentenyl phosphate kinase n=1 Tax=Candidatus Promineofilum breve TaxID=1806508 RepID=A0A160T015_9CHLR)

HSP 1 Score: 60.5 bits (145), Expect = 1.640e-9
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:    4 WLLLAGETEGVFGADGACVAEISPATLPSIEGSLGGSRGTDVTGGMASKV 153
            W LLAGETEGV   +G  +  I+ + LPS   +LGGSRGTDVTGGMA+KV
Sbjct:  172 WFLLAGETEGVLDGEGNLIPLITASNLPSYLPALGGSRGTDVTGGMAAKV 221          
BLAST of mRNA_L-digitata_M_contig100182.1.1 vs. uniprot
Match: A0A3M1ZMT5_9CHLR (Isopentenyl phosphate kinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1ZMT5_9CHLR)

HSP 1 Score: 59.7 bits (143), Expect = 3.120e-9
Identity = 31/51 (60.78%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    4 WLLLAGETEGVFGADGACVAEISPATLPSIEGSLGGSRGTDVTGGMASKVR 156
            WLLLAGETEGV   +G  +  I P     I   LGGSRGTDVTGGMA+KV+
Sbjct:  170 WLLLAGETEGVLDDEGRVIPHIHPDNFAQIAPLLGGSRGTDVTGGMAAKVQ 220          
BLAST of mRNA_L-digitata_M_contig100182.1.1 vs. uniprot
Match: A0A2G6GE47_9CHLR (Isopentenyl phosphate kinase n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2G6GE47_9CHLR)

HSP 1 Score: 58.2 bits (139), Expect = 1.140e-8
Identity = 30/51 (58.82%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    4 WLLLAGETEGVFGADGACVAEISPATLPSIEGSLGGSRGTDVTGGMASKVR 156
            WLLLAGE  GV    G  V +I+  T   I+ +LGGSRGTDVTGGM SKV+
Sbjct:  171 WLLLAGEVPGVLDGQGEVVPKITAVTFDDIKPALGGSRGTDVTGGMTSKVQ 221          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100182.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D8LBJ6_ECTSI4.300e-2290.38Aspartate/glutamate/uridylate kinase n=1 Tax=Ectoc... [more]
A0A6H5JTJ8_9PHAE1.040e-2088.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7C3H372_9CHLR2.310e-1368.63Isopentenyl phosphate kinase n=1 Tax=Chloroflexi b... [more]
A0A6L3F9Z2_9CHLR1.200e-1064.00Isopentenyl phosphate kinase n=1 Tax=Chloroflexi b... [more]
A0A2E0ZCB3_9CHLR3.850e-1062.75Isopentenyl phosphate kinase n=1 Tax=Anaerolineace... [more]
A0A7Y5Q9D0_9CHLR4.370e-1062.00Isopentenyl phosphate kinase n=1 Tax=Anaerolineae ... [more]
A0A0S8AVD4_9CHLR1.210e-962.00Isopentenyl phosphate kinase n=1 Tax=Anaerolineae ... [more]
A0A160T015_9CHLR1.640e-962.00Isopentenyl phosphate kinase n=1 Tax=Candidatus Pr... [more]
A0A3M1ZMT5_9CHLR3.120e-960.78Isopentenyl phosphate kinase n=1 Tax=Chloroflexi b... [more]
A0A2G6GE47_9CHLR1.140e-858.82Isopentenyl phosphate kinase n=2 Tax=Chloroflexi b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100182contigL-digitata_M_contig100182:614..769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size156
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionaspartate/glutamate/uridylate kinase
Ec32 orthologEc-27_003730.1
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406604.392513-CDS-L-digitata_M_contig100182:613..7691682406604.392513-CDS-L-digitata_M_contig100182:613..769Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100182 614..769 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100182.1.1prot_L-digitata_M_contig100182.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100182 614..769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100182.1.1

>prot_L-digitata_M_contig100182.1.1 ID=prot_L-digitata_M_contig100182.1.1|Name=mRNA_L-digitata_M_contig100182.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=52bp
RWLLLAGETEGVFGADGACVAEISPATLPSIEGSLGGSRGTDVTGGMASK
VR
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mRNA from alignment at L-digitata_M_contig100182:614..769+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100182.1.1 ID=mRNA_L-digitata_M_contig100182.1.1|Name=mRNA_L-digitata_M_contig100182.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=156bp|location=Sequence derived from alignment at L-digitata_M_contig100182:614..769+ (Laminaria digitata LdigPH10_18mv male)
AGGTGGCTGTTGCTGGCCGGCGAAACGGAAGGCGTTTTCGGAGCGGACGG GGCTTGCGTCGCCGAGATATCGCCGGCCACCCTCCCGTCCATCGAGGGGT CCCTGGGAGGGTCGAGGGGTACGGACGTCACCGGTGGCATGGCCTCCAAG GTACGG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100182:614..769+

>mRNA_L-digitata_M_contig100182.1.1 ID=mRNA_L-digitata_M_contig100182.1.1|Name=mRNA_L-digitata_M_contig100182.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=156bp|location=Sequence derived from alignment at L-digitata_M_contig100182:614..769+ (Laminaria digitata LdigPH10_18mv male)
AGGTGGCTGTTGCTGGCCGGCGAAACGGAAGGCGTTTTCGGAGCGGACGG
GGCTTGCGTCGCCGAGATATCGCCGGCCACCCTCCCGTCCATCGAGGGGT
CCCTGGGAGGGTCGAGGGGTACGGACGTCACCGGTGGCATGGCCTCCAAG
GTACGG
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