mRNA_L-digitata_M_contig100163.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100163.1.1
Unique NamemRNA_L-digitata_M_contig100163.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100163.1.1 vs. uniprot
Match: A0A6H5JAC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAC4_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.610e-18
Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    4 QVRKGDMLCCHQPLVQIDELKFGPDAREFKPKRFVGNPDLKKDVSKFMF 150
            QVRKGDMLCCH PL+ IDE  FG DA EFKPKRF+GNPDLK DV  + F
Sbjct:  100 QVRKGDMLCCHHPLIHIDEAVFGADATEFKPKRFIGNPDLKDDVFAYAF 148
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BLAST of mRNA_L-digitata_M_contig100163.1.1 vs. uniprot
Match: A0A1L3HS58_ECTSI (Epoxyalcohol synthase CYP5164B1 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=A0A1L3HS58_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.410e-16
Identity = 35/49 (71.43%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    4 QVRKGDMLCCHQPLVQIDELKFGPDAREFKPKRFVGNPDLKKDVSKFMF 150
            QVRKGDMLCCH PL+ IDE  FG DA EFKPKRF+GNP LK DV  + F
Sbjct:  357 QVRKGDMLCCHHPLIHIDEAVFGADATEFKPKRFIGNPGLKDDVFAYAF 405
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BLAST of mRNA_L-digitata_M_contig100163.1.1 vs. uniprot
Match: A0A6H5KDN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDN7_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 4.550e-11
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    4 QVRKGDMLCCHQPLVQIDELKFGPDAREFKPKRFVGNPDLKK 129
            +V+KGD+L C Q L Q+D   FGPDAREFKP+RFVGNP+ +K
Sbjct:   14 KVKKGDVLLCKQALEQMDPSVFGPDAREFKPERFVGNPEPRK 55
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100163.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JAC4_9PHAE1.610e-1873.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1L3HS58_ECTSI1.410e-1671.43Epoxyalcohol synthase CYP5164B1 n=2 Tax=Ectocarpus... [more]
A0A6H5KDN7_9PHAE4.550e-1164.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100163contigL-digitata_M_contig100163:548..700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size153
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size132
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406604.1888423-UTR-L-digitata_M_contig100163:547..5681682406604.1888423-UTR-L-digitata_M_contig100163:547..568Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig100163 548..568 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406604.1969624-CDS-L-digitata_M_contig100163:568..7001682406604.1969624-CDS-L-digitata_M_contig100163:568..700Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100163 569..700 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100163.1.1prot_L-digitata_M_contig100163.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100163 569..700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100163.1.1

>prot_L-digitata_M_contig100163.1.1 ID=prot_L-digitata_M_contig100163.1.1|Name=mRNA_L-digitata_M_contig100163.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=44bp
MLCCHQPLVQIDELKFGPDAREFKPKRFVGNPDLKKDVSKFMFL
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mRNA from alignment at L-digitata_M_contig100163:548..700+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100163.1.1 ID=mRNA_L-digitata_M_contig100163.1.1|Name=mRNA_L-digitata_M_contig100163.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=153bp|location=Sequence derived from alignment at L-digitata_M_contig100163:548..700+ (Laminaria digitata LdigPH10_18mv male)
TTGCAGGTGAGGAAGGGAGACATGCTGTGCTGCCACCAGCCCCTGGTGCA
GATCGACGAGCTCAAGTTCGGTCCGGACGCCCGGGAGTTCAAGCCGAAGC
GCTTCGTGGGAAACCCCGACCTGAAGAAAGATGTGAGCAAATTCATGTTT
TTA
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Coding sequence (CDS) from alignment at L-digitata_M_contig100163:548..700+

>mRNA_L-digitata_M_contig100163.1.1 ID=mRNA_L-digitata_M_contig100163.1.1|Name=mRNA_L-digitata_M_contig100163.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=132bp|location=Sequence derived from alignment at L-digitata_M_contig100163:548..700+ (Laminaria digitata LdigPH10_18mv male)
ATGCTGTGCTGCCACCAGCCCCTGGTGCAGATCGACGAGCTCAAGTTCGG
TCCGGACGCCCGGGAGTTCAAGCCGAAGCGCTTCGTGGGAAACCCCGACC
TGAAGAAAGATGTGAGCAAATTCATGTTTTTA
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