mRNA_L-digitata_M_contig100137.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100137.2.1
Unique NamemRNA_L-digitata_M_contig100137.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100137.2.1 vs. uniprot
Match: A0A7Y2U4D3_9GAMM (Phosphoglucomutase, alpha-D-glucose phosphate-specific n=2 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A7Y2U4D3_9GAMM)

HSP 1 Score: 162 bits (409), Expect = 2.460e-49
Identity = 80/109 (73.39%), Postives = 95/109 (87.16%), Query Frame = 1
Query:    4 DRFGAPVYEHIDAPASPEQKDVLKKLSPEQVSATELAGDAIVAKLTKAPANGAAIGGLKVVTEDGWFAARPSGTENIYKIYTESFKGPEHLKRIQEEAQSIVQAAFAEA 330
            +RFG+P+YE +DAPA+PEQK VLK LSPEQV+ATELAG+ I A+LT+AP N AAIGGLKVV+E+GWFAARPSGTEN+YKIY ESF G +HLKRIQEEA+SIV  A  +A
Sbjct:   19 ERFGSPMYERLDAPATPEQKTVLKNLSPEQVTATELAGEKITARLTRAPGNDAAIGGLKVVSENGWFAARPSGTENVYKIYAESFMGRDHLKRIQEEARSIVANALGDA 127          
BLAST of mRNA_L-digitata_M_contig100137.2.1 vs. uniprot
Match: A0A3D1R2Y6_9DELT (Alpha-D-glucose phosphate-specific phosphoglucomutase (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A3D1R2Y6_9DELT)

HSP 1 Score: 164 bits (414), Expect = 2.340e-48
Identity = 84/112 (75.00%), Postives = 95/112 (84.82%), Query Frame = 1
Query:    1 TDRFGAPVYEHIDAPASPEQKDVLKKLSPEQVSATELAGDAIVAKLTKAPANGAAIGGLKVVTEDGWFAARPSGTENIYKIYTESFKGPEHLKRIQEEAQSIVQAAFAEAGV 336
            T+RFGAPVYE IDA A+  QK+VLKKLSPE V A  LAG+ I AKLT AP NGAAIGGLKVV E+GWFAARPSGTE++YKIY ESFKGPEHLK+IQ+EAQ++V AAF  AGV
Sbjct:  149 TERFGAPVYERIDAAANSAQKNVLKKLSPELVKAETLAGEPIQAKLTNAPGNGAAIGGLKVVAENGWFAARPSGTEDVYKIYAESFKGPEHLKQIQKEAQAMVDAAFKAAGV 260          
BLAST of mRNA_L-digitata_M_contig100137.2.1 vs. uniprot
Match: A0A7V9AH10_9BACT (Alpha-D-glucose phosphate-specific phosphoglucomutase n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7V9AH10_9BACT)

HSP 1 Score: 164 bits (414), Expect = 2.920e-48
Identity = 81/111 (72.97%), Postives = 95/111 (85.59%), Query Frame = 1
Query:    4 DRFGAPVYEHIDAPASPEQKDVLKKLSPEQVSATELAGDAIVAKLTKAPANGAAIGGLKVVTEDGWFAARPSGTENIYKIYTESFKGPEHLKRIQEEAQSIVQAAFAEAGV 336
            +RFG+P+YE +DAPA+P QK  LK LSPE V A ELAG+ I+AKLT+AP N A+IGGLKVVTE+GWFAARPSGTEN+YKIY ESF+G EHL+RIQEEAQ+IV AAF  AGV
Sbjct:  158 ERFGSPLYERMDAPATPAQKKALKGLSPEMVEADELAGERILAKLTRAPGNDASIGGLKVVTENGWFAARPSGTENVYKIYAESFRGAEHLRRIQEEAQAIVNAAFRRAGV 268          
BLAST of mRNA_L-digitata_M_contig100137.2.1 vs. uniprot
Match: A0A3N5KB73_9PROT (Phosphoglucomutase, alpha-D-glucose phosphate-specific (Fragment) n=1 Tax=Zetaproteobacteria bacterium TaxID=2026807 RepID=A0A3N5KB73_9PROT)

HSP 1 Score: 160 bits (404), Expect = 4.210e-47
Identity = 82/112 (73.21%), Postives = 95/112 (84.82%), Query Frame = 1
Query:    1 TDRFGAPVYEHIDAPASPEQKDVLKKLSPEQVSATELAGDAIVAKLTKAPANGAAIGGLKVVTEDGWFAARPSGTENIYKIYTESFKGPEHLKRIQEEAQSIVQAAFAEAGV 336
            T RFGAP+YE IDAPA+  QK VLK+LS EQVSATELAG+ IVAKLT+AP  GAAIGGLKVVTE+GWFAARPSGTE++YKIY ESF G  H+ R+QEEA+++V AAF  AGV
Sbjct:  128 TRRFGAPIYERIDAPATSRQKAVLKQLSAEQVSATELAGEKIVAKLTRAPEGGAAIGGLKVVTENGWFAARPSGTEDVYKIYAESFLGSAHMARLQEEARALVGAAFKAAGV 239          
BLAST of mRNA_L-digitata_M_contig100137.2.1 vs. uniprot
Match: A0A532BY50_9BACT (Alpha-D-glucose phosphate-specific phosphoglucomutase n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A532BY50_9BACT)

HSP 1 Score: 162 bits (411), Expect = 7.270e-47
Identity = 81/108 (75.00%), Postives = 91/108 (84.26%), Query Frame = 1
Query:    1 TDRFGAPVYEHIDAPASPEQKDVLKKLSPEQVSATELAGDAIVAKLTKAPANGAAIGGLKVVTEDGWFAARPSGTENIYKIYTESFKGPEHLKRIQEEAQSIVQAAFA 324
            T   G PVYE IDAPA+PEQK  L KLSP+QVSATELAGD IVAK T AP NGA+IGGLKVVTE GWFAARPSGTE++YK+Y ESFKG +HLKRIQEEAQ+++  AFA
Sbjct:  243 TKELGEPVYERIDAPATPEQKATLSKLSPDQVSATELAGDTIVAKQTVAPGNGASIGGLKVVTEQGWFAARPSGTEDVYKLYAESFKGKDHLKRIQEEAQALIAKAFA 350          
BLAST of mRNA_L-digitata_M_contig100137.2.1 vs. uniprot
Match: X0RXI1_9ZZZZ (PGM_PMM_IV domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0RXI1_9ZZZZ)

HSP 1 Score: 154 bits (390), Expect = 2.540e-46
Identity = 75/109 (68.81%), Postives = 96/109 (88.07%), Query Frame = 1
Query:   10 FGAPVYEHIDAPASPEQKDVLKKLSPEQVSATELAGDAIVAKLTKAPANGAAIGGLKVVTEDGWFAARPSGTENIYKIYTESFKGPEHLKRIQEEAQSIVQAAFAEAGV 336
            FG+PVYE +D  A+ EQ+ VL+KLSP Q++A++LAG+ I+AKLT+AP NGA+IGGLKVVTE+GWFAARPSGTE+IYK+Y ESFKG EHL +IQEEA +I++AAF+ AGV
Sbjct:   28 FGSPVYERLDEAANLEQRAVLQKLSPNQITASDLAGEEIIAKLTEAPGNGASIGGLKVVTENGWFAARPSGTEDIYKVYAESFKGKEHLTQIQEEACAIIRAAFSSAGV 136          
BLAST of mRNA_L-digitata_M_contig100137.2.1 vs. uniprot
Match: A0A2V7SQ58_9BACT (Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7SQ58_9BACT)

HSP 1 Score: 164 bits (416), Expect = 5.370e-46
Identity = 78/108 (72.22%), Postives = 95/108 (87.96%), Query Frame = 1
Query:    1 TDRFGAPVYEHIDAPASPEQKDVLKKLSPEQVSATELAGDAIVAKLTKAPANGAAIGGLKVVTEDGWFAARPSGTENIYKIYTESFKGPEHLKRIQEEAQSIVQAAFA 324
            T+RFGAP YE IDAPASPEQK VL +L+PE V A+ELAG+AI+A+LT AP NGA+IGGLK+VTE+GWFAARPSGTEN+YK+Y ESFKG +HL+RIQ+EA+ I+  AFA
Sbjct:  439 TERFGAPAYERIDAPASPEQKSVLSRLTPEGVRASELAGEAIIARLTSAPGNGASIGGLKIVTENGWFAARPSGTENVYKLYAESFKGTDHLRRIQDEARQIISDAFA 546          
BLAST of mRNA_L-digitata_M_contig100137.2.1 vs. uniprot
Match: A0A0S6VTS8_9BACT (Phosphoglucomutase, alpha-D-glucose phosphate-specific n=1 Tax=Candidatus Moduliflexus flocculans TaxID=1499966 RepID=A0A0S6VTS8_9BACT)

HSP 1 Score: 153 bits (387), Expect = 6.830e-46
Identity = 75/105 (71.43%), Postives = 92/105 (87.62%), Query Frame = 1
Query:    7 RFGAPVYEHIDAPASPEQKDVLKKLSPEQVSATELAGDAIVAKLTKAPANGAAIGGLKVVTEDGWFAARPSGTENIYKIYTESFKGPEHLKRIQEEAQSIVQAAF 321
            +FG+P+YE +DAPA+ EQK +L+KLSP+ V+A ELAG+ I+AKLT AP N AA+GGLKVVTE+GWFAARPSGTE++YKIY ESFKG EHL RIQ+EAQ IV+AAF
Sbjct:   26 QFGSPIYERMDAPANREQKAILQKLSPDMVTAQELAGEPILAKLTNAPGNNAALGGLKVVTENGWFAARPSGTEDVYKIYAESFKGAEHLCRIQQEAQLIVKAAF 130          
BLAST of mRNA_L-digitata_M_contig100137.2.1 vs. uniprot
Match: A0A7X8CDH9_9DELT (Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7X8CDH9_9DELT)

HSP 1 Score: 164 bits (415), Expect = 7.710e-46
Identity = 83/110 (75.45%), Postives = 95/110 (86.36%), Query Frame = 1
Query:    7 RFGAPVYEHIDAPASPEQKDVLKKLSPEQVSATELAGDAIVAKLTKAPANGAAIGGLKVVTEDGWFAARPSGTENIYKIYTESFKGPEHLKRIQEEAQSIVQAAFAEAGV 336
            +FG PVYE ID PA+PEQK VLKKLSP+Q+SA+ L G+ I+AKLT AP NGAAIGGLKV+TE+GWFAARPSGTE+IYKIYTESFKG EHL +IQEEA+SIV  AF  AGV
Sbjct:  441 QFGNPVYERIDVPATPEQKAVLKKLSPDQISASTLGGETILAKLTAAPGNGAAIGGLKVITENGWFAARPSGTEDIYKIYTESFKGKEHLLKIQEEARSIVSNAFKIAGV 550          
BLAST of mRNA_L-digitata_M_contig100137.2.1 vs. uniprot
Match: A0A7S8IZ55_9BACT (Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) n=1 Tax=Candidatus Nitrospira kreftii TaxID=2652173 RepID=A0A7S8IZ55_9BACT)

HSP 1 Score: 164 bits (414), Expect = 1.050e-45
Identity = 80/108 (74.07%), Postives = 91/108 (84.26%), Query Frame = 1
Query:    1 TDRFGAPVYEHIDAPASPEQKDVLKKLSPEQVSATELAGDAIVAKLTKAPANGAAIGGLKVVTEDGWFAARPSGTENIYKIYTESFKGPEHLKRIQEEAQSIVQAAFA 324
            T   G PVYE IDAPA+PEQK +L KLSP+QV ATELAGD +VA LTKAP NGAAIGGLKVVTE+GWFAARPSGTE++YK+Y ESFKG EHLKRIQEEAQ+++    A
Sbjct:  438 TKELGEPVYERIDAPATPEQKTILSKLSPDQVKATELAGDKVVAMLTKAPGNGAAIGGLKVVTENGWFAARPSGTEDVYKLYAESFKGKEHLKRIQEEAQALISKVLA 545          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100137.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2U4D3_9GAMM2.460e-4973.39Phosphoglucomutase, alpha-D-glucose phosphate-spec... [more]
A0A3D1R2Y6_9DELT2.340e-4875.00Alpha-D-glucose phosphate-specific phosphoglucomut... [more]
A0A7V9AH10_9BACT2.920e-4872.97Alpha-D-glucose phosphate-specific phosphoglucomut... [more]
A0A3N5KB73_9PROT4.210e-4773.21Phosphoglucomutase, alpha-D-glucose phosphate-spec... [more]
A0A532BY50_9BACT7.270e-4775.00Alpha-D-glucose phosphate-specific phosphoglucomut... [more]
X0RXI1_9ZZZZ2.540e-4668.81PGM_PMM_IV domain-containing protein (Fragment) n=... [more]
A0A2V7SQ58_9BACT5.370e-4672.22Phosphoglucomutase (alpha-D-glucose-1,6-bisphospha... [more]
A0A0S6VTS8_9BACT6.830e-4671.43Phosphoglucomutase, alpha-D-glucose phosphate-spec... [more]
A0A7X8CDH9_9DELT7.710e-4675.45Phosphoglucomutase (alpha-D-glucose-1,6-bisphospha... [more]
A0A7S8IZ55_9BACT1.050e-4574.07Phosphoglucomutase (alpha-D-glucose-1,6-bisphospha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100137contigL-digitata_M_contig100137:603..944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog649638.Trad_0749
PFAMsPGM_PMM_I,PGM_PMM_II,PGM_PMM_III,PGM_PMM_IV
Model size342
Max annot lvl1297|Deinococcus-Thermus
KEGG rclassRC00408
KEGG koko:K01835
KEGG ReactionR00959,R01057,R08639
KEGG Pathwayko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130
KEGG ModuleM00549
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.4e-46
EggNOG OGsCOG0033@1|root,COG0033@2|Bacteria,1WJDJ@1297|Deinococcus-Thermus
EC5.4.2.2
DescriptionPhosphoglucomutase phosphomannomutase alpha beta alpha domain I
Cds size342
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406603.9980547-CDS-L-digitata_M_contig100137:602..9441682406603.9980547-CDS-L-digitata_M_contig100137:602..944Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100137 603..944 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100137.2.1prot_L-digitata_M_contig100137.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100137 603..944 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100137.2.1

>prot_L-digitata_M_contig100137.2.1 ID=prot_L-digitata_M_contig100137.2.1|Name=mRNA_L-digitata_M_contig100137.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=114bp
TDRFGAPVYEHIDAPASPEQKDVLKKLSPEQVSATELAGDAIVAKLTKAP
ANGAAIGGLKVVTEDGWFAARPSGTENIYKIYTESFKGPEHLKRIQEEAQ
SIVQAAFAEAGVS*
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mRNA from alignment at L-digitata_M_contig100137:603..944-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100137.2.1 ID=mRNA_L-digitata_M_contig100137.2.1|Name=mRNA_L-digitata_M_contig100137.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=342bp|location=Sequence derived from alignment at L-digitata_M_contig100137:603..944- (Laminaria digitata LdigPH10_18mv male)
ACCGACCGCTTCGGCGCCCCCGTCTATGAGCACATCGACGCCCCGGCCTC CCCCGAGCAGAAGGACGTCTTGAAGAAGCTGTCTCCGGAGCAGGTCTCTG CAACCGAGCTTGCGGGCGACGCCATCGTCGCCAAGCTCACCAAGGCGCCC GCAAACGGCGCGGCGATCGGCGGACTCAAGGTGGTCACCGAGGACGGCTG GTTTGCGGCCCGCCCCTCGGGCACCGAGAACATCTACAAGATTTACACGG AGTCCTTCAAAGGCCCCGAACACCTCAAACGCATCCAGGAGGAGGCTCAG AGCATCGTGCAGGCCGCCTTCGCCGAGGCTGGAGTCAGCTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100137:603..944-

>mRNA_L-digitata_M_contig100137.2.1 ID=mRNA_L-digitata_M_contig100137.2.1|Name=mRNA_L-digitata_M_contig100137.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=342bp|location=Sequence derived from alignment at L-digitata_M_contig100137:603..944- (Laminaria digitata LdigPH10_18mv male)
ACCGACCGCTTCGGCGCCCCCGTCTATGAGCACATCGACGCCCCGGCCTC
CCCCGAGCAGAAGGACGTCTTGAAGAAGCTGTCTCCGGAGCAGGTCTCTG
CAACCGAGCTTGCGGGCGACGCCATCGTCGCCAAGCTCACCAAGGCGCCC
GCAAACGGCGCGGCGATCGGCGGACTCAAGGTGGTCACCGAGGACGGCTG
GTTTGCGGCCCGCCCCTCGGGCACCGAGAACATCTACAAGATTTACACGG
AGTCCTTCAAAGGCCCCGAACACCTCAAACGCATCCAGGAGGAGGCTCAG
AGCATCGTGCAGGCCGCCTTCGCCGAGGCTGGAGTCAGCTAG
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