mRNA_L-digitata_M_contig100137.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100137.1.1
Unique NamemRNA_L-digitata_M_contig100137.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig100137.1.1 vs. uniprot
Match: A0A352FHX5_9BACT (Methyltransf_11 domain-containing protein n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A352FHX5_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 7.260e-10
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 1
Query:    1 PIAHYIERDEFESWFTALGLQNVRIGWHNENSWRGTAIV 117
            P AHY+ R++FE+W+T +  QNV IGWHN+NSWRG   V
Sbjct:  293 PTAHYLTREQFETWWTGIQAQNVTIGWHNKNSWRGFGQV 331          
BLAST of mRNA_L-digitata_M_contig100137.1.1 vs. uniprot
Match: A0A7V9UQQ1_9BACT (Methyltransferase domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7V9UQQ1_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 1.940e-9
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 1
Query:    1 PIAHYIERDEFESWFTALGLQNVRIGWHNENSWRGTAIVTQEA 129
            P A YI R+EFE W+  +G  +V IGWHN+NSWRG   + QE+
Sbjct:  294 PTAFYISREEFEKWWKEIGANDVEIGWHNKNSWRGFGRIRQES 336          
BLAST of mRNA_L-digitata_M_contig100137.1.1 vs. uniprot
Match: A0A7W1R7Y6_9BACT (Methyltransferase domain-containing protein n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7W1R7Y6_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 1.750e-8
Identity = 22/46 (47.83%), Postives = 31/46 (67.39%), Query Frame = 1
Query:    1 PIAHYIERDEFESWFTALGLQNVRIGWHNENSWRGTAIVTQEALQE 138
            P A YI R EFE W+  +    ++IGWHN+NSWRG   V+QE+ ++
Sbjct:  294 PTAFYISRGEFEEWWKEISASELKIGWHNKNSWRGFGRVSQESNRQ 339          
BLAST of mRNA_L-digitata_M_contig100137.1.1 vs. uniprot
Match: A0A535GP68_9CHLR (Methyltransferase domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535GP68_9CHLR)

HSP 1 Score: 55.5 bits (132), Expect = 1.640e-7
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1
Query:    1 PIAHYIERDEFESWFTALGLQNVRIGWHNENSWRGTAIV 117
            P+A Y+ R+EFESWF    L++VRI W N NSWRG   V
Sbjct:  401 PVAFYLRREEFESWFRHSDLRDVRISWRNRNSWRGFGRV 439          
BLAST of mRNA_L-digitata_M_contig100137.1.1 vs. uniprot
Match: A0A7V9R4J0_9BACT (Methyltransferase domain-containing protein n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A7V9R4J0_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 1.430e-6
Identity = 19/35 (54.29%), Postives = 24/35 (68.57%), Query Frame = 1
Query:    1 PIAHYIERDEFESWFTALGLQNVRIGWHNENSWRG 105
            P +HYI R+EF  W+  +    V+IGWHN NSWRG
Sbjct:  293 PTSHYISREEFAEWWKDVHATEVKIGWHNSNSWRG 327          
BLAST of mRNA_L-digitata_M_contig100137.1.1 vs. uniprot
Match: A0A1Q7D126_9ACTN (Methyltransf_25 domain-containing protein n=2 Tax=Terrabacteria group TaxID=1783272 RepID=A0A1Q7D126_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 1.970e-6
Identity = 21/39 (53.85%), Postives = 26/39 (66.67%), Query Frame = 1
Query:    1 PIAHYIERDEFESWFTALGLQNVRIGWHNENSWRGTAIV 117
            P+A Y+ R+EFESWF    L++V I W N NSWRG   V
Sbjct:  294 PVAFYLRREEFESWFQRGKLRDVTISWRNRNSWRGFGRV 332          
BLAST of mRNA_L-digitata_M_contig100137.1.1 vs. uniprot
Match: A0A535ZE04_9CHLR (Methyltransferase domain-containing protein n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535ZE04_9CHLR)

HSP 1 Score: 52.4 bits (124), Expect = 1.970e-6
Identity = 21/39 (53.85%), Postives = 26/39 (66.67%), Query Frame = 1
Query:    1 PIAHYIERDEFESWFTALGLQNVRIGWHNENSWRGTAIV 117
            P+A Y+ R+EFESWF    L++V I W N NSWRG   V
Sbjct:  301 PVAFYLRREEFESWFRRGELRDVTISWRNRNSWRGFGRV 339          
BLAST of mRNA_L-digitata_M_contig100137.1.1 vs. uniprot
Match: A0A7Y2GTP9_9BACT (Methyltransferase domain-containing protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7Y2GTP9_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 5.050e-6
Identity = 18/35 (51.43%), Postives = 26/35 (74.29%), Query Frame = 1
Query:    1 PIAHYIERDEFESWFTALGLQNVRIGWHNENSWRG 105
            P A YI ++EFE+W+  +G  +V+I WHN+NSW G
Sbjct:  292 PTAFYISKEEFETWWEEIGASDVKITWHNQNSWCG 326          
BLAST of mRNA_L-digitata_M_contig100137.1.1 vs. uniprot
Match: A0A7Y2D7L4_9BACT (Methyltransferase domain-containing protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7Y2D7L4_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 2.430e-5
Identity = 19/41 (46.34%), Postives = 27/41 (65.85%), Query Frame = 1
Query:    1 PIAHYIERDEFESWFTALGLQNVRIGWHNENSWRGTAIVTQ 123
            P A YI R++FESW+ A+G + V I  HN NSW G   +++
Sbjct:  292 PTAFYISREDFESWWDAVGAEEVEITSHNSNSWAGFGRISE 332          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100137.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A352FHX5_9BACT7.260e-1058.97Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A7V9UQQ1_9BACT1.940e-953.49Methyltransferase domain-containing protein n=1 Ta... [more]
A0A7W1R7Y6_9BACT1.750e-847.83Methyltransferase domain-containing protein n=2 Ta... [more]
A0A535GP68_9CHLR1.640e-756.41Methyltransferase domain-containing protein n=1 Ta... [more]
A0A7V9R4J0_9BACT1.430e-654.29Methyltransferase domain-containing protein n=1 Ta... [more]
A0A1Q7D126_9ACTN1.970e-653.85Methyltransf_25 domain-containing protein n=2 Tax=... [more]
A0A535ZE04_9CHLR1.970e-653.85Methyltransferase domain-containing protein n=2 Ta... [more]
A0A7Y2GTP9_9BACT5.050e-651.43Methyltransferase domain-containing protein n=1 Ta... [more]
A0A7Y2D7L4_9BACT2.430e-546.34Methyltransferase domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100137contigL-digitata_M_contig100137:5..172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406603.9649653-CDS-L-digitata_M_contig100137:4..1721682406603.9649653-CDS-L-digitata_M_contig100137:4..172Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100137 5..172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100137.1.1prot_L-digitata_M_contig100137.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100137 5..172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100137.1.1

>prot_L-digitata_M_contig100137.1.1 ID=prot_L-digitata_M_contig100137.1.1|Name=mRNA_L-digitata_M_contig100137.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=56bp
PIAHYIERDEFESWFTALGLQNVRIGWHNENSWRGTAIVTQEALQELGAP
LPENN*
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mRNA from alignment at L-digitata_M_contig100137:5..172+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100137.1.1 ID=mRNA_L-digitata_M_contig100137.1.1|Name=mRNA_L-digitata_M_contig100137.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=168bp|location=Sequence derived from alignment at L-digitata_M_contig100137:5..172+ (Laminaria digitata LdigPH10_18mv male)
CCGATCGCACACTATATCGAGCGCGATGAGTTTGAGAGTTGGTTCACTGC CTTGGGGCTACAGAATGTGCGCATTGGCTGGCACAACGAGAACTCTTGGC GGGGCACGGCCATTGTCACGCAAGAAGCCTTGCAAGAGCTCGGCGCACCG CTGCCCGAAAATAATTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig100137:5..172+

>mRNA_L-digitata_M_contig100137.1.1 ID=mRNA_L-digitata_M_contig100137.1.1|Name=mRNA_L-digitata_M_contig100137.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=168bp|location=Sequence derived from alignment at L-digitata_M_contig100137:5..172+ (Laminaria digitata LdigPH10_18mv male)
CCGATCGCACACTATATCGAGCGCGATGAGTTTGAGAGTTGGTTCACTGC
CTTGGGGCTACAGAATGTGCGCATTGGCTGGCACAACGAGAACTCTTGGC
GGGGCACGGCCATTGTCACGCAAGAAGCCTTGCAAGAGCTCGGCGCACCG
CTGCCCGAAAATAATTAG
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