mRNA_L-digitata_M_contig10013.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10013.2.1
Unique NamemRNA_L-digitata_M_contig10013.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig10013.2.1 vs. uniprot
Match: D8LT14_ECTSI (VWFA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT14_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.440e-31
Identity = 65/110 (59.09%), Postives = 77/110 (70.00%), Query Frame = 1
Query:    1 WKSPTRLCILIADAPCHGQMYHGSMRDRYPNGCPGGLDPSKLMYTLKYELGVDLYFVSITSHTNKMISTLENQLSALCKSDSKKSVRTRPEKDGEEKPEPIIVVHELGSN 330
            W+SP RLC+LIADAPCHG MYH S RD YP GCP GLDPSKL+Y L+YELGVD YFV IT  T+KMIS L+N ++    +  +   R RP K G    EP  +VH+LG N
Sbjct:  924 WESPIRLCMLIADAPCHGSMYH-SCRDNYPTGCPKGLDPSKLLYKLQYELGVDFYFVRITGITDKMISVLQNTVTGY--TSDRNHARRRPLK-GTANTEPKFMVHDLGCN 1029          
BLAST of mRNA_L-digitata_M_contig10013.2.1 vs. uniprot
Match: A0A6H5KL16_9PHAE (VWFA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL16_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.340e-28
Identity = 57/109 (52.29%), Postives = 71/109 (65.14%), Query Frame = 1
Query:    1 WKSPTRLCILIADAPCHGQMYHGSMRDRYPNGCPGGLDPSKLMYTLKYELGVDLYFVSITSHTNKMISTLENQLSALCKSDSKKSVRTRPEKDGEEKPEPIIVVHELGS 327
            W+   RLCIL+ADAPCHG MYH  + DRYPNGCP G DPSKL+Y L+YE+G D YF+ +T HT+KMI  L+N+  A+   DS    R    +         IVVH+LGS
Sbjct: 1007 WRGTIRLCILLADAPCHGSMYHIGIGDRYPNGCPKGNDPSKLLYELQYEIGADFYFIRMTRHTDKMIRVLQNRAGAMW--DSNGRPRPSSRQGASVAATRYIVVHDLGS 1113          
BLAST of mRNA_L-digitata_M_contig10013.2.1 vs. uniprot
Match: D8LT13_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT13_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 6.640e-26
Identity = 54/114 (47.37%), Postives = 71/114 (62.28%), Query Frame = 1
Query:    1 WKSPTRLCILIADAPCHGQMYHGSMRDRYPNGCPGGLDPSKLMYTLKYELGVDLYFVSITSHTNKMISTLENQLSALCKSD-----SKKSVRTRPEKDGEEKPEPIIVVHELGS 327
            W+   RLCILIADAPCHG +YH  + DRYPNGCP G DPSKL+Y L+YE+G D YF+ IT  T++MI  L+N+   +         S++ +R    +D        IVVH+L S
Sbjct:  880 WRGTIRLCILIADAPCHGSIYHAGVGDRYPNGCPKGNDPSKLLYKLQYEIGADFYFIRITEVTDRMIRVLQNRAGNMFAESRTHPSSRQGLRVAKRRD--------IVVHDLSS 985          
BLAST of mRNA_L-digitata_M_contig10013.2.1 vs. uniprot
Match: D7FWV2_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV2_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.700e-25
Identity = 53/109 (48.62%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    1 WKSPTRLCILIADAPCHGQMYHGSMRDRYPNGCPGGLDPSKLMYTLKYELGVDLYFVSITSHTNKMISTLENQLSALCKSDSKKSVRTRPEKDGEEKPEPIIVVHELGS 327
            W+   RLCIL+ADAPCHG +YH  + DRYPNGCP G DPSKL+Y L+YE+G D YF+ +T HT+KMI  L  +           S+       G    +  IVVH+LGS
Sbjct:  971 WRGNIRLCILLADAPCHGSIYHIGVGDRYPNGCPNGNDPSKLLYELQYEIGADFYFIRMTQHTDKMIQVLRKKAGDTFADAGAHSLAGN---GGRAATKRDIVVHDLGS 1076          
BLAST of mRNA_L-digitata_M_contig10013.2.1 vs. uniprot
Match: A0A6H5KWB6_9PHAE (VWFA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWB6_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.580e-22
Identity = 51/110 (46.36%), Postives = 67/110 (60.91%), Query Frame = 1
Query:    1 WKSPTRLCILIADAPCHGQMYHGSMRDRYPNGCPGGLDPSKLMYTLKYELGVDLYFVSITSHTNKMISTLENQLSALCKSDSKKSVRTRPEKDGEEKPEPIIVVHELGSN 330
            W SP RLCIL ADAPCHG+MYH  + D+YP GCP G+DPS ++Y L +ELGVD YF+ I   T+KM+   ++ +  +     +KS    P         P  VVH LGS+
Sbjct: 1032 WSSPVRLCILFADAPCHGKMYH-DVPDQYPKGCPEGVDPSNMIYQL-HELGVDFYFIRIAQVTDKMVDIFQSSVRQMAVKHGRKS---SPSPSFSNTNRPKFVVHNLGSD 1136          
BLAST of mRNA_L-digitata_M_contig10013.2.1 vs. uniprot
Match: A0A6H5KZ40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ40_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.570e-10
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1
Query:    1 WKSPTRLCILIADAPCHGQMYHGSMRDRYPNGCPGGLDPSKLMYTLK 141
            W+   RLCIL+ADAPCHG ++H    D +PN CP G DP+KL+Y L+
Sbjct:  546 WRGNIRLCILLADAPCHGNVHHTGAGDMFPNCCPMGNDPAKLLYKLQ 592          
BLAST of mRNA_L-digitata_M_contig10013.2.1 vs. uniprot
Match: F4QD32_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QD32_CAVFA)

HSP 1 Score: 60.8 bits (146), Expect = 1.710e-8
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 WKSP-TRLCILIADAPCHGQMYH--GSMRDRYPNGCPGGLDPSKLMYTLKYELGVDLYFVSITSHTNKMI 201
            WK+  T++CI +ADAPCHG  YH  G+  D  P+G   G  P + + T+K   G+D YF+ I+ HT++MI
Sbjct:  687 WKNDHTKVCIHVADAPCHGTKYHDLGAASDTLPHGDTSG-HPEEQVKTMKNR-GIDYYFIKISPHTDRMI 754          
BLAST of mRNA_L-digitata_M_contig10013.2.1 vs. uniprot
Match: F4QD06_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QD06_CAVFA)

HSP 1 Score: 56.2 bits (134), Expect = 7.170e-7
Identity = 31/75 (41.33%), Postives = 42/75 (56.00%), Query Frame = 1
Query:    1 WKSP-TRLCILIADAPCHGQMYHGSMR--DRYPNGCPGGLDPSKLMYTLKYELGVDLYFVSITSHTNKMISTLEN 216
            WK   T++C+ +ADAPCHG  YH   R  D YP+G      P + + T+K   G+D YFV I   T+KMI    +
Sbjct:  715 WKEGYTKVCVHVADAPCHGTKYHSLTREEDSYPDG--DSTHPEEQIRTMKGR-GIDYYFVRINHLTDKMIEVFRS 786          
BLAST of mRNA_L-digitata_M_contig10013.2.1 vs. uniprot
Match: F4QD11_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QD11_CAVFA)

HSP 1 Score: 55.8 bits (133), Expect = 1.010e-6
Identity = 29/70 (41.43%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    1 WKSP-TRLCILIADAPCHGQMYH--GSMRDRYPNGCPGGLDPSKLMYTLKYELGVDLYFVSITSHTNKMI 201
            WK   T++CI +ADAPCHG  YH  G++ D  P+G    + P + + T+K   G+D YF+ I   T++MI
Sbjct:  695 WKEGYTKVCIHVADAPCHGTKYHDFGAVSDSLPHG-DTNVPPEEQIKTMKNR-GIDYYFIKINHQTDRMI 762          
BLAST of mRNA_L-digitata_M_contig10013.2.1 vs. uniprot
Match: A0A819HP21_9BILA (Hypothetical protein n=5 Tax=Adineta steineri TaxID=433720 RepID=A0A819HP21_9BILA)

HSP 1 Score: 52.4 bits (124), Expect = 1.430e-5
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    1 WK-SPTRLCILIADAPCHGQMYHGSMRDRYPNGCPGGLDPSKLMYTLKYELGVDLYFVSI 177
            W+ + T++C+LI+DAP HG    G   D++PNGCP GLDP K++  +  E  + LY V +
Sbjct:  123 WRENATKICVLISDAPPHGLDPSG---DQFPNGCPAGLDPIKIVREMA-EKHITLYTVGV 178          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10013.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LT14_ECTSI1.440e-3159.09VWFA domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5KL16_9PHAE1.340e-2852.29VWFA domain-containing protein n=2 Tax=Ectocarpus ... [more]
D8LT13_ECTSI6.640e-2647.37VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FWV2_ECTSI1.700e-2548.62VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KWB6_9PHAE1.580e-2246.36VWFA domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5KZ40_9PHAE1.570e-1055.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F4QD32_CAVFA1.710e-844.29Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
F4QD06_CAVFA7.170e-741.33Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
F4QD11_CAVFA1.010e-641.43Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
A0A819HP21_9BILA1.430e-543.33Hypothetical protein n=5 Tax=Adineta steineri TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10013contigL-digitata_M_contig10013:6993..8272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LT14
PFAMsAlpha_kinase,VWA_2,dCache_1
Model size331
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.36e-32
EggNOG OGs2DNG0@1|root,2S673@2759|Eukaryota
Descriptionvon Willebrand factor (vWF) type A domain
Cds size330
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406603.8240454-CDS-L-digitata_M_contig10013:6992..71811682406603.8240454-CDS-L-digitata_M_contig10013:6992..7181Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10013 6993..7181 -
1682406603.8353846-CDS-L-digitata_M_contig10013:8131..82721682406603.8353846-CDS-L-digitata_M_contig10013:8131..8272Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10013 8132..8272 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10013.2.1prot_L-digitata_M_contig10013.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10013 6993..8272 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10013.2.1

>prot_L-digitata_M_contig10013.2.1 ID=prot_L-digitata_M_contig10013.2.1|Name=mRNA_L-digitata_M_contig10013.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=110bp
WKSPTRLCILIADAPCHGQMYHGSMRDRYPNGCPGGLDPSKLMYTLKYEL
GVDLYFVSITSHTNKMISTLENQLSALCKSDSKKSVRTRPEKDGEEKPEP
IIVVHELGSN
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mRNA from alignment at L-digitata_M_contig10013:6993..8272-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10013.2.1 ID=mRNA_L-digitata_M_contig10013.2.1|Name=mRNA_L-digitata_M_contig10013.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=1280bp|location=Sequence derived from alignment at L-digitata_M_contig10013:6993..8272- (Laminaria digitata LdigPH10_18mv male)
TGGAAGAGCCCTACCCGCCTGTGCATCCTCATCGCCGATGCACCTTGCCA CGGCCAGATGTACCACGGGAGCATGCGGGACAGATACCCCAATGGTTGCC CTGGTGGACTGGACCCGTCAAAATTGATGTACACTTTAAAGGTACGAACT CCAGAGCTCTTCACGCGTCATGGCCCGACCCGCGGGTCGGGTCAGGAAAT TTCGAAATCTCACGGGTCGAGTCGGGTCGTGCGGGTCGGGTACCGAGTGT TTCAAACTCTCACAAATCGGTTTGAGTCACCTTTATCCGACACGACCTGA CCTGACCCGCGAAGTTTGTCCCGAGCCGTGAACATCCCATCCCTGACGAA ATCCCTTCGTTTCTATTGTCGTATGGCAAAGGGTACTGATCGGAAATCTA GGACATGATCCGGAATTTTTGTTTGGTTAACGCAGTTTTATGTTGGTAAA TCTTGGGTTTGTCGAAAAATCGGAATCGGCACCGATCTAGATGCCATCCG GCTAGCGCGGCAGCTTTGTGAGGTTGAAGTCTGACGCCACTGGCTGCTAA ATTCAGCGTAACGGGTTTTGCTTATTTCAGCTTCACAGCCCAAATTGCTT TCGGGCGGTTATCGCTTACTCATATATACCTGGTAGGTGCCTCCTTTTCT GCAGGCTCCCATTAGATCTTGCCCTTGTTCTGGGAACGGAAACATGATTA ACACCCGGTACGGCAGAACAAATTTGCCGTTTACGGTGGATCGTGTTCTT GCCTCTTTAGCAAAGCGGGTTGAAGCAGCCCTCGCGAAGAAGTGGCTATG GCACCCTTTACCCGTCGAAGCTATGTATTTCCTTGACCGCGGGAACTCTC GGTTTTTTACAAAAACTAAAAAGACTCCCCAGCTGTGAAAAAAACAATTC GTCGAAACTCATCTATGCAAGCTGCGTGTGCTGCTCCGATCGCGCGTGCT GCGGGGTGGGTATGACCTTGTGGTTGGTTTGTGCAGGCTCCATGACTTGT GTGGATCAACCACTGACCCCCCTCCTCTGCCAATGAATGCCGATCGCCCT ACGTGTGCCCTCACCATAACTGGAAACACATCTATCTGCAGTACGAGCTC GGCGTCGACCTGTACTTCGTCAGCATCACAAGCCACACCAACAAAATGAT CAGCACTTTGGAGAACCAGCTGTCAGCTCTCTGCAAGAGCGACTCGAAGA AGTCCGTCAGAACCCGCCCTGAAAAGGACGGAGAGGAAAAACCCGAGCCA ATCATCGTCGTCCACGAGCTTGGCTCAAAC
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Coding sequence (CDS) from alignment at L-digitata_M_contig10013:6993..8272-

>mRNA_L-digitata_M_contig10013.2.1 ID=mRNA_L-digitata_M_contig10013.2.1|Name=mRNA_L-digitata_M_contig10013.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=330bp|location=Sequence derived from alignment at L-digitata_M_contig10013:6993..8272- (Laminaria digitata LdigPH10_18mv male)
TGGAAGAGCCCTACCCGCCTGTGCATCCTCATCGCCGATGCACCTTGCCA
CGGCCAGATGTACCACGGGAGCATGCGGGACAGATACCCCAATGGTTGCC
CTGGTGGACTGGACCCGTCAAAATTGATGTACACTTTAAAGTACGAGCTC
GGCGTCGACCTGTACTTCGTCAGCATCACAAGCCACACCAACAAAATGAT
CAGCACTTTGGAGAACCAGCTGTCAGCTCTCTGCAAGAGCGACTCGAAGA
AGTCCGTCAGAACCCGCCCTGAAAAGGACGGAGAGGAAAAACCCGAGCCA
ATCATCGTCGTCCACGAGCTTGGCTCAAAC
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