mRNA_L-digitata_M_contig100124.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100124.1.1
Unique NamemRNA_L-digitata_M_contig100124.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100124.1.1 vs. uniprot
Match: A0A6H5JPK1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK1_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 4.580e-13
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:   43 RARIRLRREFHDDLSFWRLLVDKAVGPGGAGTLGAPLLSFYLQPHSRTLISDASGD 210
            R R+RL REFH+DL+FWR ++  A GP G   L APLL  +LQ  SRTL+SDASGD
Sbjct:  789 RGRVRLGREFHEDLAFWRKVMAMATGPDGIVKLEAPLLCSFLQAPSRTLVSDASGD 844
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100124.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JPK1_9PHAE4.580e-1360.71Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100124contigL-digitata_M_contig100124:4..216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size215
Hectar predicted targeting categoryother localisation
Exons1
Cds size213
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406603.7282915-CDS-L-digitata_M_contig100124:3..2161682406603.7282915-CDS-L-digitata_M_contig100124:3..216Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100124 4..216 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100124.1.1prot_L-digitata_M_contig100124.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100124 4..216 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100124.1.1

>prot_L-digitata_M_contig100124.1.1 ID=prot_L-digitata_M_contig100124.1.1|Name=mRNA_L-digitata_M_contig100124.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=71bp
RTGTEKPRGPRGRTRARIRLRREFHDDLSFWRLLVDKAVGPGGAGTLGAP
LLSFYLQPHSRTLISDASGDA
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mRNA from alignment at L-digitata_M_contig100124:4..216+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100124.1.1 ID=mRNA_L-digitata_M_contig100124.1.1|Name=mRNA_L-digitata_M_contig100124.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=213bp|location=Sequence derived from alignment at L-digitata_M_contig100124:4..216+ (Laminaria digitata LdigPH10_18mv male)
CGGACCGGGACCGAGAAACCCCGGGGTCCGAGGGGGAGGACTCGTGCACG
TATTCGCCTCAGGCGCGAGTTCCACGACGACCTGTCGTTCTGGCGTCTGC
TGGTAGATAAGGCGGTGGGCCCGGGGGGGGCAGGTACACTAGGGGCCCCA
CTGCTGAGTTTTTATTTGCAACCTCACTCACGCACGCTTATCAGCGATGC
GTCGGGGGATGCC
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Coding sequence (CDS) from alignment at L-digitata_M_contig100124:4..216+

>mRNA_L-digitata_M_contig100124.1.1 ID=mRNA_L-digitata_M_contig100124.1.1|Name=mRNA_L-digitata_M_contig100124.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=213bp|location=Sequence derived from alignment at L-digitata_M_contig100124:4..216+ (Laminaria digitata LdigPH10_18mv male)
CGGACCGGGACCGAGAAACCCCGGGGTCCGAGGGGGAGGACTCGTGCACG
TATTCGCCTCAGGCGCGAGTTCCACGACGACCTGTCGTTCTGGCGTCTGC
TGGTAGATAAGGCGGTGGGCCCGGGGGGGGCAGGTACACTAGGGGCCCCA
CTGCTGAGTTTTTATTTGCAACCTCACTCACGCACGCTTATCAGCGATGC
GTCGGGGGATGCC
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