mRNA_H-elongata_contig183920.4953.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig183920.4953.1
Unique NamemRNA_H-elongata_contig183920.4953.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig183920.4953.1 vs. uniprot
Match: A0A6H5JFZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFZ3_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 7.310e-27
Identity = 51/69 (73.91%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:   25 ASLEACLRSLVRYYLDCMMHSNAIFLCERLVACNPREENVLLLATCHFGESSELRAHALLQGCRMPESR 231
            A +E  LRSLV+YYL+ +MH+NA FL ERLVACNPREENVLLLATCH    S+L AHALLQGCR+PESR
Sbjct:   14 AEMEDSLRSLVQYYLENLMHANATFLGERLVACNPREENVLLLATCHLMNKSKLTAHALLQGCRLPESR 82
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BLAST of mRNA_H-elongata_contig183920.4953.1 vs. uniprot
Match: D7FXT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT1_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 7.180e-25
Identity = 51/69 (73.91%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:   25 ASLEACLRSLVRYYLDCMMHSNAIFLCERLVACNPREENVLLLATCHFGESSELRAHALLQGCRMPESR 231
            A +E  LRSLV+YYL+ +MH+NA FL ERLVACNPREENVLLLATCH    S+L AHALLQGCR+PESR
Sbjct:   14 AEMEDSLRSLVQYYLENLMHANATFLGERLVACNPREENVLLLATCHVMNKSKLTAHALLQGCRLPESR 82
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BLAST of mRNA_H-elongata_contig183920.4953.1 vs. uniprot
Match: A0A835YV22_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV22_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.140e-12
Identity = 38/69 (55.07%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:   31 LEACLRSLVRYYLDCMMHSNAIFLCERLVACNPREENVLLLATCHF--GESSELRAHALLQGCRMPESR 231
            +EA LR+LV +YLD  +  NA FLCERL+A +P E+N  LLATCH   G+S + RAH LLQG R    R
Sbjct:    1 MEAQLRALVCHYLDSYLLENATFLCERLLAAHPGEDNAFLLATCHARQGDSGKRRAHVLLQGTRSEPCR 69
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BLAST of mRNA_H-elongata_contig183920.4953.1 vs. uniprot
Match: A0A0N7L7V2_PLAHL (DNA-binding cell division cycle control protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L7V2_PLAHL)

HSP 1 Score: 62.0 bits (149), Expect = 2.020e-9
Identity = 31/69 (44.93%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:   25 ASLEACLRSLVRYYLDCMMHSNAIFLCERLVACNPREENVLLLATCHFGESSELRAHALLQGCRMPESR 231
            +++E  L   ++ YLD  ++ NA FL ERLVA NP EEN+LLLATC+F +    +A A+L G    ++R
Sbjct:    3 SAVEVALIKQIQRYLDTFVYDNARFLAERLVAHNPNEENLLLLATCYFRKGQAAQAAAVLNGATSADNR 71
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BLAST of mRNA_H-elongata_contig183920.4953.1 vs. uniprot
Match: A0A061R3K8_9CHLO (Anaphase-promoting complex subunit 3 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R3K8_9CHLO)

HSP 1 Score: 62.0 bits (149), Expect = 2.020e-9
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:   31 LEACLRSLVRYYLDCMMHSNAIFLCERLVACNPREENVLLLATCHFGESSELRAHALLQGCRMPES 228
            +EA L S ++Y L+  ++ NA+FLCERLVA  P+EEN LLLATC++      RA+ LL+    P+S
Sbjct:    1 MEAQLVSAIQYSLNLHLYQNALFLCERLVAGFPKEENFLLLATCYYHSKQIHRAYHLLKNSANPQS 66
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BLAST of mRNA_H-elongata_contig183920.4953.1 vs. uniprot
Match: A0A2P5FST6_TREOI (N-terminal acetyltransferase A, auxiliary subunit n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5FST6_TREOI)

HSP 1 Score: 56.6 bits (135), Expect = 1.610e-7
Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:   31 LEACLRSLVRYYLDCMMHSNAIFLCERLVACNPREENVLLLATCHFGESSELRAHALLQGCRMPESR 231
            +EA L   V++ L   MHSNAIF+CERL A  P E N+ LLA+C+   +    A+ +L+G ++ +SR
Sbjct:    1 MEAILTDCVQHSLRDFMHSNAIFICERLCAEFPSETNLQLLASCYLRNNQAYSAYHILKGTQLAQSR 67
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BLAST of mRNA_H-elongata_contig183920.4953.1 vs. uniprot
Match: A0A078GZZ9_BRANA (BnaC05g37040D protein n=10 Tax=Brassica TaxID=3705 RepID=A0A078GZZ9_BRANA)

HSP 1 Score: 55.5 bits (132), Expect = 4.100e-7
Identity = 30/67 (44.78%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:   31 LEACLRSLVRYYLDCMMHSNAIFLCERLVACNPREENVLLLATCHFGESSELRAHALLQGCRMPESR 231
            +E  L + V   L   M SNAIFLCERL+A  P E N+ LLA C+   S    A+ +L+G + P+SR
Sbjct:    1 METLLANCVEKNLTQFMFSNAIFLCERLLAQFPSEVNLQLLARCYLSNSQPYSAYYILKGSKTPQSR 67
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BLAST of mRNA_H-elongata_contig183920.4953.1 vs. uniprot
Match: V4LCX4_EUTSA (Uncharacterized protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4LCX4_EUTSA)

HSP 1 Score: 54.3 bits (129), Expect = 1.050e-6
Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:   31 LEACLRSLVRYYLDCMMHSNAIFLCERLVACNPREENVLLLATCHFGESSELRAHALLQGCRMPESR 231
            +E  L + V   L   M +NAIFLCERL+A  P E N+ LLA C+   S    A+ +L+G +MP+SR
Sbjct:    1 MENLLVNCVERNLSQFMLTNAIFLCERLLAEFPSEVNLQLLARCYLSNSQAYSAYYILKGSKMPQSR 67
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BLAST of mRNA_H-elongata_contig183920.4953.1 vs. uniprot
Match: A0A6J0NY14_RAPSA (cell division cycle protein 27 homolog A isoform X1 n=3 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0NY14_RAPSA)

HSP 1 Score: 53.1 bits (126), Expect = 2.680e-6
Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:   31 LEACLRSLVRYYLDCMMHSNAIFLCERLVACNPREENVLLLATCHFGESSELRAHALLQGCRMPESR 231
            +E+ L + V   L   M SNAIFLCERL+A  P E N+ LLA C+        A+ +L+G + P+SR
Sbjct:    1 MESLLVNSVEKNLTQFMFSNAIFLCERLLADFPSEVNLQLLARCYLSNGQPYSAYYILKGSKTPQSR 67
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BLAST of mRNA_H-elongata_contig183920.4953.1 vs. uniprot
Match: A0A6D2LDA2_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2LDA2_9BRAS)

HSP 1 Score: 53.1 bits (126), Expect = 2.700e-6
Identity = 30/73 (41.10%), Postives = 41/73 (56.16%), Query Frame = 1 
Query:   13 VENTASLEACLRSLVRYYLDCMMHSNAIFLCERLVACNPREENVLLLATCHFGESSELRAHALLQGCRMPESR 231
            V     +E  L + V   L   M +NAIFLCERL+A  P E N+ LLA C+   S    A+ +L+G + P+SR
Sbjct:  103 VVTIRDMETLLVNCVEKNLSQFMLTNAIFLCERLLAEFPSEVNLQLLARCYLSNSQAYSAYYILKGSKTPQSR 175
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183920.4953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JFZ3_9PHAE7.310e-2773.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXT1_ECTSI7.180e-2573.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YV22_9STRA1.140e-1255.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0N7L7V2_PLAHL2.020e-944.93DNA-binding cell division cycle control protein n=... [more]
A0A061R3K8_9CHLO2.020e-948.48Anaphase-promoting complex subunit 3 n=1 Tax=Tetra... [more]
A0A2P5FST6_TREOI1.610e-743.28N-terminal acetyltransferase A, auxiliary subunit ... [more]
A0A078GZZ9_BRANA4.100e-744.78BnaC05g37040D protein n=10 Tax=Brassica TaxID=3705... [more]
V4LCX4_EUTSA1.050e-644.78Uncharacterized protein n=1 Tax=Eutrema salsugineu... [more]
A0A6J0NY14_RAPSA2.680e-643.28cell division cycle protein 27 homolog A isoform X... [more]
A0A6D2LDA2_9BRAS2.700e-641.10Uncharacterized protein n=2 Tax=Microthlaspi errat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183920contigH-elongata_contig183920:881..1114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue1.9e-20
Seed eggNOG ortholog2880.D7FXT1
Preferred nameCDC27
KEGG koko:K03350
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
GOsGO:0000003,GO:0000070,GO:0000151,GO:0000152,GO:0000209,GO:0000278,GO:0000280,GO:0000375,GO:0000377,GO:0000398,GO:0000819,GO:0001775,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006996,GO:0007049,GO:0007050,GO:0007059,GO:0007088,GO:0007091,GO:0007275,GO:0007338,GO:0007343,GO:0007346,GO:0007389,GO:0008150,GO:0008152,GO:0008283,GO:0008356,GO:0008380,GO:0009056,GO:0009057,GO:0009504,GO:0009566,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009790,GO:0009791,GO:0009793,GO:0009798,GO:0009888,GO:0009896,GO:0009933,GO:0009948,GO:0009949,GO:0009952,GO:0009987,GO:0010014,GO:0010015,GO:0010033,GO:0010071,GO:0010154,GO:0010467,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016192,GO:0016567,GO:0016740,GO:0017156,GO:0019538,GO:0019787,GO:0019899,GO:0019902,GO:0019903,GO:0019941,GO:0019953,GO:0022402,GO:0022414,GO:0022622,GO:0030071,GO:0030154,GO:0030163,GO:0031145,GO:0031331,GO:0031461,GO:0031974,GO:0031981,GO:0032270,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034399,GO:0034641,GO:0036211,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0043900,GO:0043901,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044784,GO:0045055,GO:0045732,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045930,GO:0045931,GO:0046483,GO:0046903,GO:0048285,GO:0048316,GO:0048364,GO:0048507,GO:0048508,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048532,GO:0048608,GO:0048731,GO:0048829,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051276,GO:0051301,GO:0051603,GO:0051704,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060467,GO:0060468,GO:0060471,GO:0061458,GO:0061630,GO:0061659,GO:0062033,GO:0065001,GO:0065007,GO:0070013,GO:0070647,GO:0070979,GO:0071704,GO:0071840,GO:0071849,GO:0071850,GO:0071851,GO:0080154,GO:0090068,GO:0090304,GO:0090421,GO:0097159,GO:0098813,GO:0099402,GO:0140014,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903047,GO:1903052,GO:1903364,GO:1905392,GO:1905818,GO:1905820,GO:1990234,GO:2000241,GO:2000242,GO:2001252
EggNOG free text desc.metaphase/anaphase transition of mitotic cell cycle
EggNOG OGsCOG0457@1,KOG1126@2759
COG Functional cat.JM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size234
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930055.6049361-CDS-H-elongata_contig183920:880..11141622930055.6049361-CDS-H-elongata_contig183920:880..1114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183920 881..1114 -
1691679263.3644598-CDS-H-elongata_contig183920:880..11141691679263.3644598-CDS-H-elongata_contig183920:880..1114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183920 881..1114 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183920.4953.1prot_H-elongata_contig183920.4953.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig183920 881..1114 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig183920.4953.1

>prot_H-elongata_contig183920.4953.1 ID=prot_H-elongata_contig183920.4953.1|Name=mRNA_H-elongata_contig183920.4953.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
MPPDVENTASLEACLRSLVRYYLDCMMHSNAIFLCERLVACNPREENVLL
LATCHFGESSELRAHALLQGCRMPESR*
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mRNA from alignment at H-elongata_contig183920:881..1114-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig183920.4953.1 ID=mRNA_H-elongata_contig183920.4953.1|Name=mRNA_H-elongata_contig183920.4953.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at H-elongata_contig183920:881..1114- (Himanthalia elongata Himel1 dioecious)
ATGCCGCCGGATGTAGAAAACACAGCAAGCCTGGAGGCATGCCTCCGGTC
ACTCGTGAGATACTACCTCGACTGCATGATGCACTCGAACGCGATATTCT
TGTGCGAGAGGCTGGTCGCCTGCAATCCCCGAGAGGAGAACGTGCTCCTC
CTGGCCACCTGCCACTTCGGGGAGTCTTCAGAGCTTCGGGCGCACGCTCT
GCTTCAGGGCTGCCGCATGCCCGAGAGCAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig183920:881..1114-

>mRNA_H-elongata_contig183920.4953.1 ID=mRNA_H-elongata_contig183920.4953.1|Name=mRNA_H-elongata_contig183920.4953.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig183920:881..1114- (Himanthalia elongata Himel1 dioecious)
ATGCCGCCGGATGTAGAAAACACAGCAAGCCTGGAGGCATGCCTCCGGTC
ACTCGTGAGATACTACCTCGACTGCATGATGCACTCGAACGCGATATTCT
TGTGCGAGAGGCTGGTCGCCTGCAATCCCCGAGAGGAGAACGTGCTCCTC
CTGGCCACCTGCCACTTCGGGGAGTCTTCAGAGCTTCGGGCGCACGCTCT
GCTTCAGGGCTGCCGCATGCCCGAGAGCAGGTGAATGCCGCCGGATGTAG
AAAACACAGCAAGCCTGGAGGCATGCCTCCGGTCACTCGTGAGATACTAC
CTCGACTGCATGATGCACTCGAACGCGATATTCTTGTGCGAGAGGCTGGT
CGCCTGCAATCCCCGAGAGGAGAACGTGCTCCTCCTGGCCACCTGCCACT
TCGGGGAGTCTTCAGAGCTTCGGGCGCACGCTCTGCTTCAGGGCTGCCGC
ATGCCCGAGAGCAGGTGA
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