prot_H-elongata_contig183555.4937.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig183555.4937.1
Unique Nameprot_H-elongata_contig183555.4937.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length79
Homology
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BLAST of mRNA_H-elongata_contig183555.4937.1 vs. uniprot
Match: D7FLZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLZ7_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 5.440e-32
Identity = 61/79 (77.22%), Postives = 66/79 (83.54%), Query Frame = 0 
Query:    1 KGIVWLDDGDFEPALQCFEEACTVYGANASGHFCKTVALTKLGRFTEALGAMECVLCRRGGTADDFVLRGKIRWAVGMV 79
            +G+VWLD GD E AL CFEEACTV GANAS HFCKTVAL KLGRF EAL ++E VL RR GTADD+VLR KIRWAVGMV
Sbjct:  236 QGMVWLDGGDSEAALACFEEACTVDGANASVHFCKTVALVKLGRFVEALRSVEAVLGRRKGTADDYVLRAKIRWAVGMV 314
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BLAST of mRNA_H-elongata_contig183555.4937.1 vs. uniprot
Match: A0A6H5K4B5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4B5_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 6.970e-32
Identity = 60/79 (75.95%), Postives = 65/79 (82.28%), Query Frame = 0 
Query:    1 KGIVWLDDGDFEPALQCFEEACTVYGANASGHFCKTVALTKLGRFTEALGAMECVLCRRGGTADDFVLRGKIRWAVGMV 79
            +G+VWLD GD E AL CFEEACTV GANAS H CKTVAL KLGRF EAL ++E VL RR GTADD+VLR KIRWAVGMV
Sbjct:  258 EGMVWLDGGDSEAALACFEEACTVDGANASVHSCKTVALVKLGRFVEALRSVEAVLGRRKGTADDYVLRAKIRWAVGMV 336
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183555.4937.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLZ7_ECTSI5.440e-3277.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4B5_9PHAE6.970e-3275.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..70
e-value: 2.3E-6
score: 29.4
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 2..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183555contigH-elongata_contig183555:20..484 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183555.4937.1mRNA_H-elongata_contig183555.4937.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig183555 20..484 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig183555.4937.1 ID=prot_H-elongata_contig183555.4937.1|Name=mRNA_H-elongata_contig183555.4937.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
KGIVWLDDGDFEPALQCFEEACTVYGANASGHFCKTVALTKLGRFTEALG
AMECVLCRRGGTADDFVLRGKIRWAVGMV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf