mRNA_H-elongata_contig182528.4896.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig182528.4896.1
Unique NamemRNA_H-elongata_contig182528.4896.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Match: A0A6H5L324_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L324_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 2.940e-13
Identity = 36/65 (55.38%), Postives = 51/65 (78.46%), Query Frame = 2
Query:  449 VILR*MAQISGVVSIEYPPAYEKFLAALSVINLNLGSILSLSCVFETNFYERLVLATIGPIAVLG 643
            V+ + + Q S V  IEYP AY+ FL+ + V+NL+LG ILS +CV++TNFY+RL++ATIGP+ VLG
Sbjct:  706 VVWQIVTQYSDVAGIEYPGAYQDFLSVVDVVNLDLGFILSFACVYDTNFYDRLLMATIGPVLVLG 770          
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Match: D7FTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT9_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 4.000e-13
Identity = 35/65 (53.85%), Postives = 51/65 (78.46%), Query Frame = 2
Query:  449 VILR*MAQISGVVSIEYPPAYEKFLAALSVINLNLGSILSLSCVFETNFYERLVLATIGPIAVLG 643
            V+ + + Q S V  +EYP AY+ FL+ + V+NL+LG ILS +CV++TNFY+RL++ATIGP+ VLG
Sbjct:  725 VVWQIVTQYSDVAGVEYPGAYQDFLSVVDVVNLDLGFILSFACVYDTNFYDRLLMATIGPVLVLG 789          
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Match: D7FPF7_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF7_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 2.360e-12
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 2
Query:  464 MAQISGVVSIEYPPAYEKFLAALSVINLNLGSILSLSCVFETNFYERLVLATIGPIAVLG 643
            + Q S VV++ YP  YEKFL+ L+++N N G ILS SCV +TNFY RL+ ATIGP+ VLG
Sbjct:   74 VTQFSSVVNVVYPDVYEKFLSILNLVNFNFGFILSASCVVDTNFYGRLLFATIGPLVVLG 133          
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Match: A0A6H5KHA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA3_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.490e-11
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  449 VILR*MAQISGVVSIEYPPAYEKFLAALSVINLNLGSILSLSCVFETNFYERLVLATIGPIAVLG 643
            V+ + + Q + VV +EYP  YE+FLAAL+++N NLG  LS  C+ ETNFY RL  +TI P+A+LG
Sbjct:   49 VVWQIVTQFASVVDVEYPEIYERFLAALNLVNFNLGYFLSFLCLVETNFYGRLAFSTIVPLAILG 113          
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Match: D7FUB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB5_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 2.590e-11
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 2
Query:  464 MAQISGVVSIEYPPAYEKFLAALSVINLNLGSILSLSCVFETNFYERLVLATIGPIAVLG 643
            + Q + VV +EYP  YE+FLAAL+++N NLG  LS  CV ETNFY RL  +T+ P+A+LG
Sbjct:   32 VTQFASVVDVEYPEIYERFLAALNLVNFNLGFFLSFLCVVETNFYGRLAFSTLLPLAILG 91          
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.710e-11
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 1
Query:   25 CAVCEEGFTSELQYNCHTCQVSEKWVAVCRAAAVLIVALFVVTLVVAYLVRVEDRPIFEGSGRCVRWLLDFRDMVVRAIPLTAIKIVIVTWQIITQ 312
            CAVC+EG+ S  Q++C  C       A+  + A+  VAL  + LV+A LVRV D    + +    + L   RD +V+A+PLT+IKIV+V WQI+TQ
Sbjct:  657 CAVCDEGYASGYQFSCSICDGENLRSAIGTSVALFFVALVGIALVIADLVRVVDEVEPDTASTWGKRLTSCRDRIVKAVPLTSIKIVVVAWQIVTQ 752          
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Match: A0A6H5L874_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L874_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.270e-11
Identity = 34/65 (52.31%), Postives = 49/65 (75.38%), Query Frame = 2
Query:  449 VILR*MAQISGVVSIEYPPAYEKFLAALSVINLNLGSILSLSCVFETNFYERLVLATIGPIAVLG 643
            V+ + + Q S V  +EYP AY+ FL+ + V+NL+LG ILSL+CV++T+FY+RL+L TI P  VLG
Sbjct:  588 VVWQIVTQYSDVAGVEYPGAYKDFLSVIDVVNLDLGFILSLACVYDTDFYDRLLLTTICPAVVLG 652          
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 2.340e-10
Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 2
Query:  449 VILR*MAQISGVVSIEYPPAYEKFLAALSVINLNLGSILSLSCVFETNFYERLVLATIGPIAVLG 643
            V+ + + Q S V  +EYP AY+ FL+ + V+NL+LG ILSL+CV +T+FY+RL+L TI P  VLG
Sbjct:  730 VVWQIVTQYSDVAGVEYPGAYKDFLSVVDVVNLDLGFILSLACVCDTDFYDRLLLTTICPAVVLG 794          
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Match: D7FHV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV0_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 2.660e-9
Identity = 29/72 (40.28%), Postives = 49/72 (68.06%), Query Frame = 2
Query:  425 FYASVLRDVILR*MAQISGVVSIEYPPAYEKFLAALSVINLNLGSILSLSCVFETNFYERLVLATIGPIAVL 640
            F+   +  V+L+ + Q + + SIE+ P ++ FL+ +SVINL+LG +L+  C+ + NFY  L+ AT+GP+ VL
Sbjct:  139 FHKLKIPFVVLQIITQYASITSIEFAPVFQTFLSTISVINLDLGWVLTSVCIIDVNFYGNLIAATVGPLMVL 210          
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Match: D8LRF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF7_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.020e-8
Identity = 29/72 (40.28%), Postives = 49/72 (68.06%), Query Frame = 2
Query:  425 FYASVLRDVILR*MAQISGVVSIEYPPAYEKFLAALSVINLNLGSILSLSCVFETNFYERLVLATIGPIAVL 640
            F+   +  V+L+ + Q + + SIE+ P ++ FL+ +SVINL+LG +L+  C+ + NFY  L+ AT+GP+ VL
Sbjct:  584 FHKLKIPFVVLQIITQYASITSIEFAPVFQTFLSTISVINLDLGWVLTSVCIIDVNFYGNLIAATVGPLMVL 655          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig182528.4896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5L324_9PHAE2.940e-1355.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTT9_ECTSI4.000e-1353.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FPF7_ECTSI2.360e-1258.33Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
A0A6H5KHA3_9PHAE1.490e-1152.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUB5_ECTSI2.590e-1155.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWI3_9PHAE2.710e-1142.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L874_9PHAE3.270e-1152.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTU5_ECTSI2.340e-1052.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHV0_ECTSI2.660e-940.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRF7_ECTSI1.020e-840.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig182528contigH-elongata_contig182528:392..1036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size645
Cds size405
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930050.2460616-CDS-H-elongata_contig182528:391..7961622930050.2460616-CDS-H-elongata_contig182528:391..796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182528 392..796 +
1691679261.3723829-CDS-H-elongata_contig182528:391..7961691679261.3723829-CDS-H-elongata_contig182528:391..796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182528 392..796 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930050.2590346-UTR-H-elongata_contig182528:796..10361622930050.2590346-UTR-H-elongata_contig182528:796..1036Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig182528 797..1036 +
1691679261.3804684-UTR-H-elongata_contig182528:796..10361691679261.3804684-UTR-H-elongata_contig182528:796..1036Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig182528 797..1036 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig182528.4896.1prot_H-elongata_contig182528.4896.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig182528 392..796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig182528.4896.1

>prot_H-elongata_contig182528.4896.1 ID=prot_H-elongata_contig182528.4896.1|Name=mRNA_H-elongata_contig182528.4896.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
MYNLFSKDCAVCEEGFTSELQYNCHTCQVSEKWVAVCRAAAVLIVALFVV
TLVVAYLVRVEDRPIFEGSGRCVRWLLDFRDMVVRAIPLTAIKIVIVTWQ
IITQVRVSFPSGVTIASNVCKLCDVGSGACTRLA*
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mRNA from alignment at H-elongata_contig182528:392..1036+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig182528.4896.1 ID=mRNA_H-elongata_contig182528.4896.1|Name=mRNA_H-elongata_contig182528.4896.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=645bp|location=Sequence derived from alignment at H-elongata_contig182528:392..1036+ (Himanthalia elongata Himel1 dioecious)
ATGTACAACCTATTCTCAAAAGATTGTGCTGTTTGCGAAGAGGGGTTCAC CTCCGAGCTTCAGTACAACTGCCACACGTGTCAAGTGTCTGAGAAATGGG TCGCCGTCTGCAGAGCCGCGGCGGTGCTTATCGTCGCATTATTCGTGGTT ACGTTGGTGGTGGCTTACCTCGTTCGCGTCGAGGACCGCCCGATATTTGA GGGAAGTGGGAGGTGTGTAAGGTGGCTCTTGGACTTCCGAGATATGGTCG TACGCGCCATCCCGCTCACCGCTATCAAGATCGTGATTGTTACGTGGCAG ATCATCACGCAGGTAAGGGTTAGTTTTCCCAGTGGAGTCACGATCGCATC TAACGTATGTAAACTCTGTGATGTAGGATCTGGTGCATGCACGAGGCTAG CTTAGGGGGACGGATTCGTTCTTATTTTACGCTTCCGTACTTCGTGACGT AATTCTCCGCTAAATGGCACAGATTTCCGGCGTGGTGAGCATCGAGTACC CTCCAGCGTACGAGAAATTCCTGGCAGCTCTGAGCGTTATCAATTTGAAT CTGGGATCTATCCTTTCACTTTCGTGTGTCTTTGAGACCAATTTTTATGA ACGCCTCGTTTTAGCAACTATTGGACCGATCGCAGTGCTTGGTGT
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Coding sequence (CDS) from alignment at H-elongata_contig182528:392..1036+

>mRNA_H-elongata_contig182528.4896.1 ID=mRNA_H-elongata_contig182528.4896.1|Name=mRNA_H-elongata_contig182528.4896.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig182528:392..1036+ (Himanthalia elongata Himel1 dioecious)
ATGTACAACCTATTCTCAAAAGATTGTGCTGTTTGCGAAGAGGGGTTCAC
CTCCGAGCTTCAGTACAACTGCCACACGTGTCAAGTGTCTGAGAAATGGG
TCGCCGTCTGCAGAGCCGCGGCGGTGCTTATCGTCGCATTATTCGTGGTT
ACGTTGGTGGTGGCTTACCTCGTTCGCGTCGAGGACCGCCCGATATTTGA
GGGAAGTGGGAGGTGTGTAAGGTGGCTCTTGGACTTCCGAGATATGGTCG
TACGCGCCATCCCGCTCACCGCTATCAAGATCGTGATTGTTACGTGGCAG
ATCATCACGCAGGTAAGGGTTAGTTTTCCCAGTGGAGTCACGATCGCATC
TAACGTATGTAAACTCTGTGATGTAGGATCTGGTGCATGCACGAGGCTAG
CTTAGATGTACAACCTATTCTCAAAAGATTGTGCTGTTTGCGAAGAGGGG
TTCACCTCCGAGCTTCAGTACAACTGCCACACGTGTCAAGTGTCTGAGAA
ATGGGTCGCCGTCTGCAGAGCCGCGGCGGTGCTTATCGTCGCATTATTCG
TGGTTACGTTGGTGGTGGCTTACCTCGTTCGCGTCGAGGACCGCCCGATA
TTTGAGGGAAGTGGGAGGTGTGTAAGGTGGCTCTTGGACTTCCGAGATAT
GGTCGTACGCGCCATCCCGCTCACCGCTATCAAGATCGTGATTGTTACGT
GGCAGATCATCACGCAGGTAAGGGTTAGTTTTCCCAGTGGAGTCACGATC
GCATCTAACGTATGTAAACTCTGTGATGTAGGATCTGGTGCATGCACGAG
GCTAGCTTAG
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