mRNA_H-elongata_contig181929.4875.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig181929.4875.1
Unique NamemRNA_H-elongata_contig181929.4875.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig181929.4875.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 1.940e-48
Identity = 83/105 (79.05%), Postives = 89/105 (84.76%), Query Frame = 1
Query:    1 ADSSTTSIIMNSVRMELEAFQASTGIKMHELDKEGTKVYLDPLDWWRVRYTDFPHLANLARSVLVIPAIQAESERVLSCAGNIGTKNRNNLTPTTVELLVLLRHS 315
            ADSS   +I +SVR+EL AF+ STGIKM+E DKEG KVYLDPLDWWRVR  DFPHLANLAR VL IPA QAESER+ SCAGNI TKNRNNL PTTVELLVLLRHS
Sbjct:  182 ADSSFVRLITSSVRVELTAFKVSTGIKMYEEDKEGAKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHS 286          
BLAST of mRNA_H-elongata_contig181929.4875.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.690e-22
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 1
Query:  151 TDFPHLANLARSVLVIPAIQAESERVLSCAGNIGTKNRNNLTPTTVELLVLLRHS 315
            TDFPHLANLAR VL IPA QA+SER+ SCAGNI TKNRNNL PTTVELLVLLRHS
Sbjct:  152 TDFPHLANLARRVLAIPATQAKSERLFSCAGNIVTKNRNNLAPTTVELLVLLRHS 206          
BLAST of mRNA_H-elongata_contig181929.4875.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 7.430e-14
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 1
Query:   37 VRMELEAFQASTGIKMHELDKEGTKVYLDPLDWWRVRYTDFPHLANLARSVLVIPAIQAESERV 228
            V +E+ +FQ + GI +     +G KVY DPLDWWR R  +FPHLA LAR VL IP+ QA SERV
Sbjct:  486 VDLEVASFQTTPGISIWYWGTDGKKVYNDPLDWWRTRQMEFPHLAALARRVLAIPSSQAHSERV 549          
BLAST of mRNA_H-elongata_contig181929.4875.1 vs. uniprot
Match: A0A1X7SR93_AMPQE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SR93_AMPQE)

HSP 1 Score: 67.8 bits (164), Expect = 3.010e-12
Identity = 31/62 (50.00%), Postives = 39/62 (62.90%), Query Frame = 1
Query:  121 DPLDWWRVRYTDFPHLANLARSVLVIPAIQAESERVLSCAGNIGTKNRNNLTPTTVELLVLL 306
            D  +WWR     FPHL+++AR +L IPA    SER+ S AG I TK R NL P  V++LV L
Sbjct:   67 DVFEWWRKNQEMFPHLSDIARKLLCIPATSVPSERIFSVAGGIVTKKRTNLKPENVDMLVFL 128          
BLAST of mRNA_H-elongata_contig181929.4875.1 vs. uniprot
Match: A0A2D4C1W9_PYTIN (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C1W9_PYTIN)

HSP 1 Score: 66.6 bits (161), Expect = 6.850e-11
Identity = 36/82 (43.90%), Postives = 43/82 (52.44%), Query Frame = 1
Query:   70 TGIKMHELDKEGTKVYLDPLDWWRVRYTDFPHLANLARSVLVIPAIQAESERVLSCAGNIGTKNRNNLTPTTVELLVLLRHS 315
            TG ++   D       + PLDWWR R  DFPH+A LAR  L   A    SER  S AGN+ T  R +L P  V  LV L H+
Sbjct:  184 TGQQVTAEDLNAAVFNIKPLDWWRDRANDFPHVARLARRWLSCVATSVLSERAFSTAGNVITAKRGSLRPELVRDLVFLAHN 265          
BLAST of mRNA_H-elongata_contig181929.4875.1 vs. uniprot
Match: X1X2X7_ACYPI (Dimer_Tnp_hAT domain-containing protein n=5 Tax=Aphidinae TaxID=133076 RepID=X1X2X7_ACYPI)

HSP 1 Score: 66.6 bits (161), Expect = 1.280e-10
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 1
Query:  118 LDPLDWWRVRYTDFPHLANLARSVLVIPAIQAESERVLSCAGNIGTKNRNNLTPTTVELLVLLRHS 315
            LDPL+WW+ RY+ +P +  LA+  + I A    +ER  S AGNI T+ R +L+P  V LLV L  +
Sbjct:  409 LDPLEWWKTRYSKYPTIGKLAKKYMAITATSVSAERCFSTAGNIVTRKRASLSPENVNLLVFLHQN 474          
BLAST of mRNA_H-elongata_contig181929.4875.1 vs. uniprot
Match: UPI001C1CE2AD (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C1CE2AD)

HSP 1 Score: 64.3 bits (155), Expect = 3.540e-10
Identity = 27/62 (43.55%), Postives = 41/62 (66.13%), Query Frame = 1
Query:  127 LDWWRVRYTDFPHLANLARSVLVIPAIQAESERVLSCAGNIGTKNRNNLTPTTVELLVLLRH 312
            L WW++   ++PHLAN+A+  L +PA  A SER+ S A N+ T +R +L P TV  ++ L+H
Sbjct:  167 LKWWKLHEEEYPHLANMAKDYLGVPATSASSERIFSSAANVITYDRASLAPETVRSVMYLKH 228          
BLAST of mRNA_H-elongata_contig181929.4875.1 vs. uniprot
Match: A0A094DPG2_9PEZI (Dimer_Tnp_hAT domain-containing protein n=3 Tax=unclassified Pseudogymnoascus TaxID=2637121 RepID=A0A094DPG2_9PEZI)

HSP 1 Score: 60.5 bits (145), Expect = 8.220e-10
Identity = 28/64 (43.75%), Postives = 43/64 (67.19%), Query Frame = 1
Query:  121 DPLDWWRVRYTDFPHLANLARSVLVIPAIQAESERVLSCAGNIGTKNRNNLTPTTVELLVLLRH 312
            D L +W+ +   +P +A++A+  L IPA  A+SERV S  G+I TK RN L+P+T+  L+ LR+
Sbjct:   11 DILKYWQSKQYQYPLIASIAKDYLAIPATSADSERVFSVGGDIITKKRNQLSPSTLRYLLCLRN 74          
BLAST of mRNA_H-elongata_contig181929.4875.1 vs. uniprot
Match: A0A819YBE0_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A819YBE0_9BILA)

HSP 1 Score: 63.2 bits (152), Expect = 9.760e-10
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 1
Query:  121 DPLDWWRVRYTDFPHLANLARSVLVIPAIQAESERVLSCAGNIGTKNRNNLTPTTVELLVLLR 309
            +PL +W+V+      LAN+A+S+LVIPA  AESER  S AG I T+ R+ L P TVE LV+L+
Sbjct:  154 NPLSFWKVQKDTIGLLANIAKSLLVIPASSAESERHFSIAGQIVTEQRSLLDPDTVEALVVLK 216          
BLAST of mRNA_H-elongata_contig181929.4875.1 vs. uniprot
Match: U1GF76_ENDPU (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Endocarpon pusillum (strain Z07020 / HMAS-L-300199) TaxID=1263415 RepID=U1GF76_ENDPU)

HSP 1 Score: 63.5 bits (153), Expect = 1.580e-9
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 1
Query:  121 DPLDWWRVRYTDFPHLANLARSVLVIPAIQAESERVLSCAGNIGTKNRNNLTPTTVELLVLLRH 312
            D + WWR +   FP LA LA ++L IPA+ AE ERV S A  + T NRN+L+P TVE+   LR+
Sbjct:  499 DLIAWWREQEASFPLLATLAYTILAIPAMSAECERVFSSAKLLITPNRNHLSPDTVEMSECLRN 562          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig181929.4875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWI1_9PHAE1.940e-4879.05Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JPB0_9PHAE2.690e-2285.45Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KUY5_9PHAE7.430e-1456.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1X7SR93_AMPQE3.010e-1250.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Am... [more]
A0A2D4C1W9_PYTIN6.850e-1143.90Dimer_Tnp_hAT domain-containing protein n=1 Tax=Py... [more]
X1X2X7_ACYPI1.280e-1043.94Dimer_Tnp_hAT domain-containing protein n=5 Tax=Ap... [more]
UPI001C1CE2AD3.540e-1043.55Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
A0A094DPG2_9PEZI8.220e-1043.75Dimer_Tnp_hAT domain-containing protein n=3 Tax=un... [more]
A0A819YBE0_9BILA9.760e-1052.38Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
U1GF76_ENDPU1.580e-950.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=En... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig181929contigH-elongata_contig181929:603..917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue3.9e-15
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size288
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930048.236429-UTR-H-elongata_contig181929:602..6291622930048.236429-UTR-H-elongata_contig181929:602..629Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig181929 603..629 +
1691679260.6633866-UTR-H-elongata_contig181929:602..6291691679260.6633866-UTR-H-elongata_contig181929:602..629Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig181929 603..629 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930048.2558222-CDS-H-elongata_contig181929:629..9171622930048.2558222-CDS-H-elongata_contig181929:629..917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181929 630..917 +
1691679260.6746757-CDS-H-elongata_contig181929:629..9171691679260.6746757-CDS-H-elongata_contig181929:629..917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181929 630..917 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig181929.4875.1prot_H-elongata_contig181929.4875.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig181929 630..917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig181929.4875.1

>prot_H-elongata_contig181929.4875.1 ID=prot_H-elongata_contig181929.4875.1|Name=mRNA_H-elongata_contig181929.4875.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
MNSVRMELEAFQASTGIKMHELDKEGTKVYLDPLDWWRVRYTDFPHLANL
ARSVLVIPAIQAESERVLSCAGNIGTKNRNNLTPTTVELLVLLRHS
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mRNA from alignment at H-elongata_contig181929:603..917+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig181929.4875.1 ID=mRNA_H-elongata_contig181929.4875.1|Name=mRNA_H-elongata_contig181929.4875.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=315bp|location=Sequence derived from alignment at H-elongata_contig181929:603..917+ (Himanthalia elongata Himel1 dioecious)
GCTGATAGCTCCACCACCAGCATCATCATGAACTCGGTGCGGATGGAGCT TGAAGCCTTCCAGGCGTCCACAGGTATCAAGATGCATGAGTTAGACAAGG AAGGCACAAAGGTGTACCTTGACCCCTTGGACTGGTGGCGGGTACGGTAC ACAGACTTCCCGCACTTGGCCAACCTCGCCCGCAGTGTGCTGGTGATCCC CGCCATTCAGGCAGAGTCCGAGCGTGTGTTATCCTGTGCTGGAAATATCG GCACGAAGAATCGCAACAACTTGACCCCCACCACCGTCGAGCTGCTCGTC CTCCTGCGCCACTCG
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Coding sequence (CDS) from alignment at H-elongata_contig181929:603..917+

>mRNA_H-elongata_contig181929.4875.1 ID=mRNA_H-elongata_contig181929.4875.1|Name=mRNA_H-elongata_contig181929.4875.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig181929:603..917+ (Himanthalia elongata Himel1 dioecious)
ATGAACTCGGTGCGGATGGAGCTTGAAGCCTTCCAGGCGTCCACAGGTAT
CAAGATGCATGAGTTAGACAAGGAAGGCACAAAGGTGTACCTTGACCCCT
TGGACTGGTGGCGGGTACGGTACACAGACTTCCCGCACTTGGCCAACCTC
GCCCGCAGTGTGCTGGTGATCCCCGCCATTCAGGCAGAGTCCGAGCGTGT
GTTATCCTGTGCTGGAAATATCGGCACGAAGAATCGCAACAACTTGACCC
CCACCACCGTCGAGCTGCTCGTCCTCCTGCGCCACTCGATGAACTCGGTG
CGGATGGAGCTTGAAGCCTTCCAGGCGTCCACAGGTATCAAGATGCATGA
GTTAGACAAGGAAGGCACAAAGGTGTACCTTGACCCCTTGGACTGGTGGC
GGGTACGGTACACAGACTTCCCGCACTTGGCCAACCTCGCCCGCAGTGTG
CTGGTGATCCCCGCCATTCAGGCAGAGTCCGAGCGTGTGTTATCCTGTGC
TGGAAATATCGGCACGAAGAATCGCAACAACTTGACCCCCACCACCGTCG
AGCTGCTCGTCCTCCTGCGCCACTCG
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