prot_H-elongata_contig18190.4874.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig18190.4874.1
Unique Nameprot_H-elongata_contig18190.4874.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length208
Homology
BLAST of mRNA_H-elongata_contig18190.4874.1 vs. uniprot
Match: A0A146LHR9_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A146LHR9_LYGHE)

HSP 1 Score: 144 bits (364), Expect = 1.780e-36
Identity = 75/204 (36.76%), Postives = 121/204 (59.31%), Query Frame = 0
Query:    5 LNIPEPRNRRQAMKSPEWDDWRKAEEIEMRGVVDNCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVEKYNCRLVVQGFWQVEGVHYTEEYSPTPSTASIRMLLATAAAKEGELRHFDAEQAFLTADIDEELYIEIPEKYRKLPGAVGRLNKAIYGLVHAGRCWNNKFCSDMAAIGFEQGKENPCVFRKVVDGEADVVVVVHVDD 208
            LN+ EP+N R+A+ S    +W KA + E+  + +N  +     P  K  + TK +YK K+  DG ++K+  RLVVQGF Q  G+ Y + +SP    +++R LL+ AA+K  +L  FD   AFL   ++EE+YI+ PE +      V +LN+++YGL  A RCWN +F + +  IGF+Q   + C+F K  +    +++ ++VDD
Sbjct:  237 LNLEEPKNYREAINSENKVNWEKAMQSEIDSLHENKTWTLANLPDGKKAISTKWVYKVKMNPDGTIDKFKARLVVQGFSQRLGIDYEQTFSPVAKASTVRTLLSVAASKNMKLMQFDVSTAFLYGYLEEEIYIKQPEGFDDGSNKVCKLNRSLYGLKQAPRCWNQRFAAFLLKIGFKQSNADTCLFLKKTES-THIMIALYVDD 439          
BLAST of mRNA_H-elongata_contig18190.4874.1 vs. uniprot
Match: A0A5N6LW24_9ASTR (Integrase catalytic domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LW24_9ASTR)

HSP 1 Score: 140 bits (353), Expect = 7.410e-35
Identity = 80/202 (39.60%), Postives = 112/202 (55.45%), Query Frame = 0
Query:    9 EPRNRRQAMKSPEWDDWRKAEEIEMRGVVDNCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVEKYNCRLVVQGFWQVEGVHYTEEYSPTPSTASIRMLLATAAAKEGELRHFDAEQAFLTADIDEELYIEIPEKY--RKLPGAVGRLNKAIYGLVHAGRCWNNKFCSDMAAIGFEQGKENPCVFRKVVDGEADVVVVVHVDD 208
            EP N + A+  PE   W  A   EM+ + DN V+  V  P     VG+K ++KRK    G V  Y  RLV +GF Q +GV Y E +SP     SIR+LLA AA  + E+   D + AFL   + E++Y+  PE +   K P  V +LNK+IYGL  A RCWN +F   +   GF + ++ PCV+RK   G     ++++VDD
Sbjct:  465 EPTNHKTAISDPESAKWLDAMNSEMQSMRDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPEGFVDPKYPNKVCKLNKSIYGLKQASRCWNLRFDQKIKEFGFIKNEDEPCVYRKA-SGRTISFLILYVDD 665          
BLAST of mRNA_H-elongata_contig18190.4874.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM)

HSP 1 Score: 137 bits (345), Expect = 9.160e-34
Identity = 70/199 (35.18%), Postives = 117/199 (58.79%), Query Frame = 0
Query:   10 PRNRRQAMKSPEWDDWRKAEEIEMRGVVDNCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVEKYNCRLVVQGFWQVEGVHYTEEYSPTPSTASIRMLLATAAAKEGELRHFDAEQAFLTADIDEELYIEIPEKYRKLPGAVGRLNKAIYGLVHAGRCWNNKFCSDMAAIGFEQGKENPCVFRKVVDGEADVVVVVHVDD 208
            P+  +QA +SPEW +W+ A E E   ++    ++     +++ +VG++ ++ +K  + GKV +Y  RLV QGF Q+ GV YT+ YSP     ++R  +A +A K+ E+R  D + A+L  +++EE+++E PE +    G V RL   +YGL  AGR WN K  + +  +GF +   +PCV+    DG+   ++ V VDD
Sbjct:  855 PKTLKQARESPEWRNWQSAMEEEYGQLMQMGTWELDEPDEERKLVGSRWVFAKKYDEHGKVNQYKARLVAQGFSQIPGVDYTDNYSPVVRLDAVRACIALSAIKDWEMRQIDIKGAYLNGELEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMWNKKLNAQLTTLGFNRTNADPCVYYNNQDGKI-TILTVWVDD 1052          
BLAST of mRNA_H-elongata_contig18190.4874.1 vs. uniprot
Match: A0A8J6LHG9_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LHG9_TENMO)

HSP 1 Score: 137 bits (345), Expect = 9.510e-34
Identity = 74/200 (37.00%), Postives = 118/200 (59.00%), Query Frame = 0
Query:    9 EPRNRRQAMKSPEWDDWRKAEEIEMRGVVDNCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVEKYNCRLVVQGFWQVEGVHYTEEYSPTPSTASIRMLLATAAAKEGELRHFDAEQAFLTADIDEELYIEIPEKYRKLPGAVGRLNKAIYGLVHAGRCWNNKFCSDMAAIGFEQGKENPCVFRKVVDGEADVVVVVHVDD 208
            EP +  +A  S   + W++A + E++ +  N  +  V  PK++ V+  + +Y  K  +DG V+KY  RLV +GF QV GV Y E +SP     SIRM+L  AA+++  LR FD + AFL  +IDE LY++ P+ Y+     V +LN+++YGL  A RCWN +F S ++ +G      + CVF    D +  +++ +H+DD
Sbjct:  197 EPESFEEATSSGNAEQWKQAMDEEIQSLKQNQTWTLVEPPKNQQVIDNRWVYIIKRNEDGSVQKYKARLVARGFRQVAGVDYNETFSPVTKFDSIRMILCVAASEKLILRQFDVKTAFLYGNIDEILYMQQPDGYQDGTKRVCKLNRSLYGLKQASRCWNQRFTSVLSRLGLHPTNADACVFTNG-DPKNQLILAIHIDD 395          
BLAST of mRNA_H-elongata_contig18190.4874.1 vs. uniprot
Match: A0A8J6LFP5_TENMO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LFP5_TENMO)

HSP 1 Score: 136 bits (342), Expect = 1.120e-33
Identity = 73/200 (36.50%), Postives = 117/200 (58.50%), Query Frame = 0
Query:    9 EPRNRRQAMKSPEWDDWRKAEEIEMRGVVDNCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVEKYNCRLVVQGFWQVEGVHYTEEYSPTPSTASIRMLLATAAAKEGELRHFDAEQAFLTADIDEELYIEIPEKYRKLPGAVGRLNKAIYGLVHAGRCWNNKFCSDMAAIGFEQGKENPCVFRKVVDGEADVVVVVHVDD 208
            EP +  +A  S   + W++A + E++ +  N  +  V  PK++  +  + +YK K  +DG V+KY  RLV +GF QV GV Y E +SP     SIRM+L  A +++  LR FD + AFL  +IDE LY++ P+ Y+     V +LN+++YGL  A RCWN +F S ++ +G      + CVF    D +  +++ +H+DD
Sbjct:  132 EPESFEEATSSGNSEHWKQAMDEEIQSLKQNQTWTLVEPPKNQQFIDNRWVYKIKRNEDGSVQKYKARLVARGFRQVAGVDYNETFSPVTKFDSIRMILCVAVSEKLILRQFDVKTAFLYGNIDEILYMQQPDGYQDGTKRVCKLNRSLYGLKQASRCWNQRFTSVLSRLGLHPTNADVCVFTNG-DPKNQLILAIHIDD 330          
BLAST of mRNA_H-elongata_contig18190.4874.1 vs. uniprot
Match: UPI000901691E (uncharacterized protein LOC109184712 n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI000901691E)

HSP 1 Score: 133 bits (334), Expect = 1.810e-33
Identity = 72/203 (35.47%), Postives = 117/203 (57.64%), Query Frame = 0
Query:    7 IPEPRNRRQAMKSPEWDDWRKAEEIEMRGVVDNCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVEKYNCRLVVQGFWQVEGVHYTEEYSPTPSTASIRMLLATAAAKEGELRHFDAEQAFLTADIDEELYIEIPEKYR-KLPGAVGRLNKAIYGLVHAGRCWNNKFCSDMAAIGFEQGKENPCVFRKVVDGEADVVVVVHVDD 208
            + EP+   QA+ +   ++W+KA   E++ + DN  ++    P  K  +G K +YK K+  DG +E+Y  RLV +G+ Q  G+ Y E +SP     +IR  LA A+++   +   D   AFL  D+ EE+Y+ +P  +  + P  V RL +++YGL  A R WN K C+ + +IGF+Q K +P +F K   G+  + V+V+VDD
Sbjct:    2 VDEPKTYNQAITN---ENWKKAMLTEIQALQDNHTWELTELPAGKTPIGCKWVYKLKMKSDGSIERYKARLVAKGYTQQLGIDYIETFSPVARITTIRTFLAVASSRSWHVHQLDVNNAFLHGDLTEEVYMTLPPGFNTEKPNQVCRLLRSLYGLKQASRQWNEKLCTALLSIGFDQSKSDPSLFTKG-KGDKFIAVLVYVDD 200          
BLAST of mRNA_H-elongata_contig18190.4874.1 vs. uniprot
Match: A0A5N6MMD4_9ASTR (Uncharacterized protein n=6 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MMD4_9ASTR)

HSP 1 Score: 136 bits (342), Expect = 2.300e-33
Identity = 78/202 (38.61%), Postives = 112/202 (55.45%), Query Frame = 0
Query:    9 EPRNRRQAMKSPEWDDWRKAEEIEMRGVVDNCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVEKYNCRLVVQGFWQVEGVHYTEEYSPTPSTASIRMLLATAAAKEGELRHFDAEQAFLTADIDEELYIEIPEKY--RKLPGAVGRLNKAIYGLVHAGRCWNNKFCSDMAAIGFEQGKENPCVFRKVVDGEADVVVVVHVDD 208
            EP N + A+  P+   W  A   EM+ + DN V+  V  P     VG+K ++KRK    G V  Y  RLV +GF Q +GV Y E +SP     SIR+LLA AA  + E+   D + AFL   + E++Y+  P+ +   K P  V +LNK+IYGL  A RCWN +F   +   GF + ++ PCV+RK   G     ++++VDD
Sbjct:  798 EPTNYKSAIIDPKSAKWLDAMNSEMQSMRDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRVLLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPDGFIDPKYPSKVCKLNKSIYGLKQASRCWNLRFDQKIKEFGFIKNEDEPCVYRKA-SGSTISFLILYVDD 998          
BLAST of mRNA_H-elongata_contig18190.4874.1 vs. uniprot
Match: A0A5N6L9X5_9ASTR (Uncharacterized protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6L9X5_9ASTR)

HSP 1 Score: 134 bits (338), Expect = 7.250e-33
Identity = 77/202 (38.12%), Postives = 111/202 (54.95%), Query Frame = 0
Query:    9 EPRNRRQAMKSPEWDDWRKAEEIEMRGVVDNCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVEKYNCRLVVQGFWQVEGVHYTEEYSPTPSTASIRMLLATAAAKEGELRHFDAEQAFLTADIDEELYIEIPEKY--RKLPGAVGRLNKAIYGLVHAGRCWNNKFCSDMAAIGFEQGKENPCVFRKVVDGEADVVVVVHVDD 208
            EP N + A+  PE   W  A   EM+ + DN V+  V  P      G+K ++KRK    G V  Y  +LV +GF Q +GV Y E +SP     SIR+LLA AA  + E+   D + AFL   + E++Y+  P+ +   K P  V +LNK+IYGL  A RCWN +F   +   GF + ++ PCV+RK   G     ++++VDD
Sbjct:  601 EPTNYKSAISDPESAKWLDAMNSEMQSMRDNQVWDLVELPPGSRAGGSKWIFKRKTDMHGNVHTYKAQLVAKGFTQTQGVDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPDGFIDPKYPSKVCKLNKSIYGLKQASRCWNLRFDQKIKEFGFIKNEDEPCVYRKA-SGSTISFLILYVDD 801          
BLAST of mRNA_H-elongata_contig18190.4874.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY)

HSP 1 Score: 134 bits (337), Expect = 1.090e-32
Identity = 74/203 (36.45%), Postives = 121/203 (59.61%), Query Frame = 0
Query:    9 EPRNRRQAMKSPEWDDWRKAEEIEMRGVVDNCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVEKYNCRLVVQGFWQVEGVHYTEEYSPTPSTASIRMLLATAAAKEGELRHFDAEQAFLTADIDEELYIEIP--EKYRKLPGAVGRLNKAIYGLVHAGRCWNNKFCSDMAAIGFEQGKENPCVFRKVVDGEA-DVVVVVHVDD 208
            EPR+  +AM+SP+W  W+KA E EMR + D+  Y  V  P++  VVG+K +++ K   +GK+E Y  RLV QGF Q+ G+ + + ++P    ASIR++LA AA  + ++   D + A+L AD++EE++++ P  +  R     V  L  AIYGL  +GR W  K C+ +  +G  +   + CVF    D ++  +++ + VDD
Sbjct:  959 EPRSLEEAMQSPDWPQWQKAIEKEMRNLRDHHTYDLVEPPENTNVVGSKFVFRIKRNANGKIESYKARLVAQGFSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQPPGQAKRGKEHWVCLLRHAIYGLKQSGRQWFKKMCAALDEMGLSRSLVDHCVFYLDEDDDSVTLIIALSVDD 1161          
BLAST of mRNA_H-elongata_contig18190.4874.1 vs. uniprot
Match: A0A0J7K725_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K725_LASNI)

HSP 1 Score: 133 bits (335), Expect = 1.960e-32
Identity = 68/194 (35.05%), Postives = 121/194 (62.37%), Query Frame = 0
Query:   15 QAMKSPEWDDWRKAEEIEMRGVVDNCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVEKYNCRLVVQGFWQVEGVHYTEEYSPTPSTASIRMLLATAAAKEGELRHFDAEQAFLTADIDEELYIEIPEKYRKLPGAVGRLNKAIYGLVHAGRCWNNKFCSDMAAIGFEQGKENPCVFRKVVDGEADVVVVVHVDD 208
            +AM S +   W+ A E E+  +  N  ++ V  P DK  + +K ++K K   DG+++++  RLV +GF Q+EGV Y+E Y+PT    +I++LL+ + ++  ++  FD + AFL  +++EE+Y+++P++ ++    V +L KA+YGL  A RCWN KF + +   GF Q + + CV+    + E  V++V++VDD
Sbjct:  640 EAMNSSDSKKWKAAIEEELDALNQNDTWELVPLPPDKRSISSKWVFKVKRYPDGRIQRHKARLVARGFAQIEGVDYSETYAPTTRYDTIQVLLSLSVSRGLKISQFDVKTAFLHGELEEEVYMDLPDEVKESTNRVCKLKKALYGLKQAPRCWNRKFNNFLQEFGFRQCQADKCVYNGEFE-EKTVLLVIYVDD 832          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18190.4874.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A146LHR9_LYGHE1.780e-3636.76Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6LW24_9ASTR7.410e-3539.60Integrase catalytic domain-containing protein n=2 ... [more]
A0A0C3AKI0_9AGAM9.160e-3435.18Uncharacterized protein (Fragment) n=1 Tax=Serendi... [more]
A0A8J6LHG9_TENMO9.510e-3437.00Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A8J6LFP5_TENMO1.120e-3336.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI000901691E1.810e-3335.47uncharacterized protein LOC109184712 n=1 Tax=Ipomo... [more]
A0A5N6MMD4_9ASTR2.300e-3338.61Uncharacterized protein n=6 Tax=Mikania micrantha ... [more]
A0A5N6L9X5_9ASTR7.250e-3338.12Uncharacterized protein n=2 Tax=Mikania micrantha ... [more]
A0A401GQU1_9APHY1.090e-3236.45Uncharacterized protein n=3 Tax=Sparassis crispa T... [more]
A0A0J7K725_LASNI1.960e-3235.05Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=677... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 41..208
e-value: 7.7E-35
score: 120.7
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 19..188
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 19..188

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18190contigH-elongata_contig18190:3..626 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18190.4874.1mRNA_H-elongata_contig18190.4874.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig18190 3..626 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig18190.4874.1 ID=prot_H-elongata_contig18190.4874.1|Name=mRNA_H-elongata_contig18190.4874.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=208bp
MHATLNIPEPRNRRQAMKSPEWDDWRKAEEIEMRGVVDNCVYKQVARPKD
KLVVGTKMLYKRKVGQDGKVEKYNCRLVVQGFWQVEGVHYTEEYSPTPST
ASIRMLLATAAAKEGELRHFDAEQAFLTADIDEELYIEIPEKYRKLPGAV
GRLNKAIYGLVHAGRCWNNKFCSDMAAIGFEQGKENPCVFRKVVDGEADV
VVVVHVDD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like