mRNA_H-elongata_contig18190.4874.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig18190.4874.1 vs. uniprot
Match: A0A5N6LW24_9ASTR (Integrase catalytic domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LW24_9ASTR) HSP 1 Score: 140 bits (353), Expect = 7.410e-35 Identity = 80/202 (39.60%), Postives = 112/202 (55.45%), Query Frame = 1
Query: 25 EPRNRRQAMKSPEWDDWRKAEEIEMRGVVDNCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVEKYNCRLVVQGFWQVEGVHYTEEYSPTPSTASIRMLLATAAAKEGELRHFDAEQAFLTADIDEELYIEIPEKY--RKLPGAVGRLNKAIYGLVHAGRCWNNKFCSDMAAIGFEQGKENPCVFRKVVDGEADVVVVVHVDD 624
EP N + A+ PE W A EM+ + DN V+ V P VG+K ++KRK G V Y RLV +GF Q +GV Y E +SP SIR+LLA AA + E+ D + AFL + E++Y+ PE + K P V +LNK+IYGL A RCWN +F + GF + ++ PCV+RK G ++++VDD
Sbjct: 465 EPTNHKTAISDPESAKWLDAMNSEMQSMRDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPEGFVDPKYPNKVCKLNKSIYGLKQASRCWNLRFDQKIKEFGFIKNEDEPCVYRKA-SGRTISFLILYVDD 665
BLAST of mRNA_H-elongata_contig18190.4874.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM) HSP 1 Score: 137 bits (345), Expect = 9.160e-34 Identity = 70/199 (35.18%), Postives = 117/199 (58.79%), Query Frame = 1
Query: 28 PRNRRQAMKSPEWDDWRKAEEIEMRGVVDNCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVEKYNCRLVVQGFWQVEGVHYTEEYSPTPSTASIRMLLATAAAKEGELRHFDAEQAFLTADIDEELYIEIPEKYRKLPGAVGRLNKAIYGLVHAGRCWNNKFCSDMAAIGFEQGKENPCVFRKVVDGEADVVVVVHVDD 624
P+ +QA +SPEW +W+ A E E ++ ++ +++ +VG++ ++ +K + GKV +Y RLV QGF Q+ GV YT+ YSP ++R +A +A K+ E+R D + A+L +++EE+++E PE + G V RL +YGL AGR WN K + + +GF + +PCV+ DG+ ++ V VDD
Sbjct: 855 PKTLKQARESPEWRNWQSAMEEEYGQLMQMGTWELDEPDEERKLVGSRWVFAKKYDEHGKVNQYKARLVAQGFSQIPGVDYTDNYSPVVRLDAVRACIALSAIKDWEMRQIDIKGAYLNGELEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMWNKKLNAQLTTLGFNRTNADPCVYYNNQDGKI-TILTVWVDD 1052
BLAST of mRNA_H-elongata_contig18190.4874.1 vs. uniprot
Match: A0A8J6LHG9_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LHG9_TENMO) HSP 1 Score: 137 bits (345), Expect = 9.510e-34 Identity = 74/200 (37.00%), Postives = 118/200 (59.00%), Query Frame = 1
Query: 25 EPRNRRQAMKSPEWDDWRKAEEIEMRGVVDNCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVEKYNCRLVVQGFWQVEGVHYTEEYSPTPSTASIRMLLATAAAKEGELRHFDAEQAFLTADIDEELYIEIPEKYRKLPGAVGRLNKAIYGLVHAGRCWNNKFCSDMAAIGFEQGKENPCVFRKVVDGEADVVVVVHVDD 624
EP + +A S + W++A + E++ + N + V PK++ V+ + +Y K +DG V+KY RLV +GF QV GV Y E +SP SIRM+L AA+++ LR FD + AFL +IDE LY++ P+ Y+ V +LN+++YGL A RCWN +F S ++ +G + CVF D + +++ +H+DD
Sbjct: 197 EPESFEEATSSGNAEQWKQAMDEEIQSLKQNQTWTLVEPPKNQQVIDNRWVYIIKRNEDGSVQKYKARLVARGFRQVAGVDYNETFSPVTKFDSIRMILCVAASEKLILRQFDVKTAFLYGNIDEILYMQQPDGYQDGTKRVCKLNRSLYGLKQASRCWNQRFTSVLSRLGLHPTNADACVFTNG-DPKNQLILAIHIDD 395
BLAST of mRNA_H-elongata_contig18190.4874.1 vs. uniprot
Match: A0A8J6LFP5_TENMO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LFP5_TENMO) HSP 1 Score: 136 bits (342), Expect = 1.120e-33 Identity = 73/200 (36.50%), Postives = 117/200 (58.50%), Query Frame = 1
Query: 25 EPRNRRQAMKSPEWDDWRKAEEIEMRGVVDNCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVEKYNCRLVVQGFWQVEGVHYTEEYSPTPSTASIRMLLATAAAKEGELRHFDAEQAFLTADIDEELYIEIPEKYRKLPGAVGRLNKAIYGLVHAGRCWNNKFCSDMAAIGFEQGKENPCVFRKVVDGEADVVVVVHVDD 624
EP + +A S + W++A + E++ + N + V PK++ + + +YK K +DG V+KY RLV +GF QV GV Y E +SP SIRM+L A +++ LR FD + AFL +IDE LY++ P+ Y+ V +LN+++YGL A RCWN +F S ++ +G + CVF D + +++ +H+DD
Sbjct: 132 EPESFEEATSSGNSEHWKQAMDEEIQSLKQNQTWTLVEPPKNQQFIDNRWVYKIKRNEDGSVQKYKARLVARGFRQVAGVDYNETFSPVTKFDSIRMILCVAVSEKLILRQFDVKTAFLYGNIDEILYMQQPDGYQDGTKRVCKLNRSLYGLKQASRCWNQRFTSVLSRLGLHPTNADVCVFTNG-DPKNQLILAIHIDD 330
BLAST of mRNA_H-elongata_contig18190.4874.1 vs. uniprot
Match: UPI000901691E (uncharacterized protein LOC109184712 n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI000901691E) HSP 1 Score: 133 bits (334), Expect = 1.810e-33 Identity = 72/203 (35.47%), Postives = 117/203 (57.64%), Query Frame = 1
Query: 19 IPEPRNRRQAMKSPEWDDWRKAEEIEMRGVVDNCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVEKYNCRLVVQGFWQVEGVHYTEEYSPTPSTASIRMLLATAAAKEGELRHFDAEQAFLTADIDEELYIEIPEKYR-KLPGAVGRLNKAIYGLVHAGRCWNNKFCSDMAAIGFEQGKENPCVFRKVVDGEADVVVVVHVDD 624
+ EP+ QA+ + ++W+KA E++ + DN ++ P K +G K +YK K+ DG +E+Y RLV +G+ Q G+ Y E +SP +IR LA A+++ + D AFL D+ EE+Y+ +P + + P V RL +++YGL A R WN K C+ + +IGF+Q K +P +F K G+ + V+V+VDD
Sbjct: 2 VDEPKTYNQAITN---ENWKKAMLTEIQALQDNHTWELTELPAGKTPIGCKWVYKLKMKSDGSIERYKARLVAKGYTQQLGIDYIETFSPVARITTIRTFLAVASSRSWHVHQLDVNNAFLHGDLTEEVYMTLPPGFNTEKPNQVCRLLRSLYGLKQASRQWNEKLCTALLSIGFDQSKSDPSLFTKG-KGDKFIAVLVYVDD 200
BLAST of mRNA_H-elongata_contig18190.4874.1 vs. uniprot
Match: A0A5N6MMD4_9ASTR (Uncharacterized protein n=6 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MMD4_9ASTR) HSP 1 Score: 136 bits (342), Expect = 2.300e-33 Identity = 78/202 (38.61%), Postives = 112/202 (55.45%), Query Frame = 1
Query: 25 EPRNRRQAMKSPEWDDWRKAEEIEMRGVVDNCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVEKYNCRLVVQGFWQVEGVHYTEEYSPTPSTASIRMLLATAAAKEGELRHFDAEQAFLTADIDEELYIEIPEKY--RKLPGAVGRLNKAIYGLVHAGRCWNNKFCSDMAAIGFEQGKENPCVFRKVVDGEADVVVVVHVDD 624
EP N + A+ P+ W A EM+ + DN V+ V P VG+K ++KRK G V Y RLV +GF Q +GV Y E +SP SIR+LLA AA + E+ D + AFL + E++Y+ P+ + K P V +LNK+IYGL A RCWN +F + GF + ++ PCV+RK G ++++VDD
Sbjct: 798 EPTNYKSAIIDPKSAKWLDAMNSEMQSMRDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRVLLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPDGFIDPKYPSKVCKLNKSIYGLKQASRCWNLRFDQKIKEFGFIKNEDEPCVYRKA-SGSTISFLILYVDD 998
BLAST of mRNA_H-elongata_contig18190.4874.1 vs. uniprot
Match: A0A5N6L9X5_9ASTR (Uncharacterized protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6L9X5_9ASTR) HSP 1 Score: 134 bits (338), Expect = 7.250e-33 Identity = 77/202 (38.12%), Postives = 111/202 (54.95%), Query Frame = 1
Query: 25 EPRNRRQAMKSPEWDDWRKAEEIEMRGVVDNCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVEKYNCRLVVQGFWQVEGVHYTEEYSPTPSTASIRMLLATAAAKEGELRHFDAEQAFLTADIDEELYIEIPEKY--RKLPGAVGRLNKAIYGLVHAGRCWNNKFCSDMAAIGFEQGKENPCVFRKVVDGEADVVVVVHVDD 624
EP N + A+ PE W A EM+ + DN V+ V P G+K ++KRK G V Y +LV +GF Q +GV Y E +SP SIR+LLA AA + E+ D + AFL + E++Y+ P+ + K P V +LNK+IYGL A RCWN +F + GF + ++ PCV+RK G ++++VDD
Sbjct: 601 EPTNYKSAISDPESAKWLDAMNSEMQSMRDNQVWDLVELPPGSRAGGSKWIFKRKTDMHGNVHTYKAQLVAKGFTQTQGVDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPDGFIDPKYPSKVCKLNKSIYGLKQASRCWNLRFDQKIKEFGFIKNEDEPCVYRKA-SGSTISFLILYVDD 801
BLAST of mRNA_H-elongata_contig18190.4874.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY) HSP 1 Score: 134 bits (337), Expect = 1.090e-32 Identity = 74/203 (36.45%), Postives = 121/203 (59.61%), Query Frame = 1
Query: 25 EPRNRRQAMKSPEWDDWRKAEEIEMRGVVDNCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVEKYNCRLVVQGFWQVEGVHYTEEYSPTPSTASIRMLLATAAAKEGELRHFDAEQAFLTADIDEELYIEIP--EKYRKLPGAVGRLNKAIYGLVHAGRCWNNKFCSDMAAIGFEQGKENPCVFRKVVDGEA-DVVVVVHVDD 624
EPR+ +AM+SP+W W+KA E EMR + D+ Y V P++ VVG+K +++ K +GK+E Y RLV QGF Q+ G+ + + ++P ASIR++LA AA + ++ D + A+L AD++EE++++ P + R V L AIYGL +GR W K C+ + +G + + CVF D ++ +++ + VDD
Sbjct: 959 EPRSLEEAMQSPDWPQWQKAIEKEMRNLRDHHTYDLVEPPENTNVVGSKFVFRIKRNANGKIESYKARLVAQGFSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQPPGQAKRGKEHWVCLLRHAIYGLKQSGRQWFKKMCAALDEMGLSRSLVDHCVFYLDEDDDSVTLIIALSVDD 1161
BLAST of mRNA_H-elongata_contig18190.4874.1 vs. uniprot
Match: A0A0J7K725_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K725_LASNI) HSP 1 Score: 133 bits (335), Expect = 1.960e-32 Identity = 68/194 (35.05%), Postives = 121/194 (62.37%), Query Frame = 1
Query: 43 QAMKSPEWDDWRKAEEIEMRGVVDNCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVEKYNCRLVVQGFWQVEGVHYTEEYSPTPSTASIRMLLATAAAKEGELRHFDAEQAFLTADIDEELYIEIPEKYRKLPGAVGRLNKAIYGLVHAGRCWNNKFCSDMAAIGFEQGKENPCVFRKVVDGEADVVVVVHVDD 624
+AM S + W+ A E E+ + N ++ V P DK + +K ++K K DG+++++ RLV +GF Q+EGV Y+E Y+PT +I++LL+ + ++ ++ FD + AFL +++EE+Y+++P++ ++ V +L KA+YGL A RCWN KF + + GF Q + + CV+ + E V++V++VDD
Sbjct: 640 EAMNSSDSKKWKAAIEEELDALNQNDTWELVPLPPDKRSISSKWVFKVKRYPDGRIQRHKARLVARGFAQIEGVDYSETYAPTTRYDTIQVLLSLSVSRGLKISQFDVKTAFLHGELEEEVYMDLPDEVKESTNRVCKLKKALYGLKQAPRCWNRKFNNFLQEFGFRQCQADKCVYNGEFE-EKTVLLVIYVDD 832
BLAST of mRNA_H-elongata_contig18190.4874.1 vs. uniprot
Match: A0A1R3G1W7_COCAP (Uncharacterized protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3G1W7_COCAP) HSP 1 Score: 132 bits (333), Expect = 3.820e-32 Identity = 76/200 (38.00%), Postives = 113/200 (56.50%), Query Frame = 1
Query: 25 EPRNRRQAMKSPEWDDWRKAEEIEMRGVVDNCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVEKYNCRLVVQGFWQVEGVHYTEEYSPTPSTASIRMLLATAAAKEGELRHFDAEQAFLTADIDEELYIEIPEKYRKLPGAVGRLNKAIYGLVHAGRCWNNKFCSDMAAIGFEQGKENPCVFRKVVDGEADVVVVVHVDD 624
EP+ ++A S +DW+ A + E++ + N +K V P K +G K ++K K DG VE+Y RLV +G+ Q EGV Y + +SP ++R LL AAAK L D AFL ++DEE+Y+++PE Y G V RL K++YGL A R WN K + + GF+Q + +F K GE + ++V+VDD
Sbjct: 728 EPKTYKEAAMS---NDWQLAMKSEIKALEANNTWKVVDLPPGKTAIGCKWVFKVKRKADGSVERYKARLVAKGYTQQEGVDYMDTFSPVAKMTTVRTLLTVAAAKNWFLHQCDVNNAFLHGNLDEEVYMKLPEGYSHEKGKVCRLQKSLYGLKQASRQWNAKLTATLLQFGFQQSSADHTLFTKTT-GEIFMALLVYVDD 923 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18190.4874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18190.4874.1 >prot_H-elongata_contig18190.4874.1 ID=prot_H-elongata_contig18190.4874.1|Name=mRNA_H-elongata_contig18190.4874.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=208bp MHATLNIPEPRNRRQAMKSPEWDDWRKAEEIEMRGVVDNCVYKQVARPKDback to top mRNA from alignment at H-elongata_contig18190:3..626- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18190.4874.1 ID=mRNA_H-elongata_contig18190.4874.1|Name=mRNA_H-elongata_contig18190.4874.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=624bp|location=Sequence derived from alignment at H-elongata_contig18190:3..626- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18190:3..626- >mRNA_H-elongata_contig18190.4874.1 ID=mRNA_H-elongata_contig18190.4874.1|Name=mRNA_H-elongata_contig18190.4874.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1248bp|location=Sequence derived from alignment at H-elongata_contig18190:3..626- (Himanthalia elongata Himel1 dioecious)back to top |