mRNA_H-elongata_contig181469.4857.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig181469.4857.1
Unique Name	mRNA_H-elongata_contig181469.4857.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig181469.4857.1 vs. uniprot
Match: A0A6A2XKG3_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2XKG3_HIBSY)

HSP 1 Score: 64.7 bits (156), Expect = 2.100e-9
Identity = 48/139 (34.53%), Postives = 71/139 (51.08%), Query Frame = 1

Query:    1 CFNCGKGGHYARDCRASEESGATDNRKAAKGAILAKLTVPAVPEVGTIAAMVGAACGDRKEEWESDSGSTFHMSHTRAGMSAYKKASPGMTVEIADENTLQVDGFGRIEMDVDQPGHTTKRVKMDDVAYVPGISRNLLS 417
            C+NCGK GH+ RDCRA ++  +T           A +T     E G   AM+  +     E W  DSG++FH +  +  M  Y     G  V +AD+ TL++ G G I + +  P  TT   K+  V ++PG+ RNL+S
Sbjct:  392 CYNCGKNGHFKRDCRALKKDTSTQGS--------ANMT----EETGD--AMI-LSVNSPIESWILDSGASFHSTSCQEIMENYVSGDFGK-VHLADDETLKIVGKGDIRLKL--PNQTTW--KLTGVRHIPGLKRNLIS 510

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BLAST of mRNA_H-elongata_contig181469.4857.1 vs. uniprot
Match: A0A6A3BK95_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BK95_HIBSY)

HSP 1 Score: 64.3 bits (155), Expect = 2.790e-9
Identity = 49/139 (35.25%), Postives = 72/139 (51.80%), Query Frame = 1

Query:    1 CFNCGKGGHYARDCRASEESGATDNRKAAKGAILAKLTVPAVPEVGTIAAMVGAACGDRKEEWESDSGSTFHMSHTRAGMSAYKKASPGMTVEIADENTLQVDGFGRIEMDVDQPGHTTKRVKMDDVAYVPGISRNLLS 417
            C+NCGK GH+ RDCRA ++     N  A + A + +       E G   AM+  +     E W  DSG++FH +  R  M  Y     G  V +AD+ TL++ G G I + +  P  TT   K+  V ++PG+ RNL+S
Sbjct:  233 CYNCGKKGHFKRDCRAPKK-----NTGAQESANMTE-------ETGD--AMI-LSVNSPIESWILDSGASFHSTPCREIMENYVSGDFGK-VHLADDETLKIVGKGDIRLKL--PNQTTW--KLTGVRHIPGLKRNLIS 351

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BLAST of mRNA_H-elongata_contig181469.4857.1 vs. uniprot
Match: A0A6A2W9F3_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2W9F3_HIBSY)

HSP 1 Score: 64.3 bits (155), Expect = 2.850e-9
Identity = 49/139 (35.25%), Postives = 72/139 (51.80%), Query Frame = 1

Query:    1 CFNCGKGGHYARDCRASEESGATDNRKAAKGAILAKLTVPAVPEVGTIAAMVGAACGDRKEEWESDSGSTFHMSHTRAGMSAYKKASPGMTVEIADENTLQVDGFGRIEMDVDQPGHTTKRVKMDDVAYVPGISRNLLS 417
            C+NCGK GH+ RDCRA ++     N  A + A + +       E G   AM+  +     E W  DSG++FH +  R  M  Y     G  V +AD+ TL++ G G I + +  P  TT   K+  V ++PG+ RNL+S
Sbjct:  233 CYNCGKKGHFKRDCRAPKK-----NTGAQESANITE-------ETGD--AMI-LSVNSPIESWILDSGASFHSTPCREIMENYVSGDFGK-VHLADDETLKIVGKGDIRLKL--PNQTTW--KLTGVRHIPGLKRNLIS 351

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BLAST of mRNA_H-elongata_contig181469.4857.1 vs. uniprot
Match: A0A6A2WXJ4_HIBSY (F-box family protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXJ4_HIBSY)

HSP 1 Score: 64.3 bits (155), Expect = 2.890e-9
Identity = 49/139 (35.25%), Postives = 72/139 (51.80%), Query Frame = 1

Query:    1 CFNCGKGGHYARDCRASEESGATDNRKAAKGAILAKLTVPAVPEVGTIAAMVGAACGDRKEEWESDSGSTFHMSHTRAGMSAYKKASPGMTVEIADENTLQVDGFGRIEMDVDQPGHTTKRVKMDDVAYVPGISRNLLS 417
            C+NCGK GH+ RDCRA ++     N  A + A + +       E G   AM+  +     E W  DSG++FH +  R  M  Y     G  V +AD+ TL++ G G I + +  P  TT   K+  V ++PG+ RNL+S
Sbjct:  709 CYNCGKKGHFKRDCRAPKK-----NTGAQESANMTE-------ETGD--AMI-LSVNSPIESWILDSGASFHSTPCREIMENYVSGDFGK-VHLADDETLKIVGKGDIRLKL--PNQTTW--KLTGVRHIPGLKRNLIS 827

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BLAST of mRNA_H-elongata_contig181469.4857.1 vs. uniprot
Match: A0A6A3AJH8_HIBSY (Ion channel CASTOR n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3AJH8_HIBSY)

HSP 1 Score: 64.3 bits (155), Expect = 2.900e-9
Identity = 49/139 (35.25%), Postives = 72/139 (51.80%), Query Frame = 1

Query:    1 CFNCGKGGHYARDCRASEESGATDNRKAAKGAILAKLTVPAVPEVGTIAAMVGAACGDRKEEWESDSGSTFHMSHTRAGMSAYKKASPGMTVEIADENTLQVDGFGRIEMDVDQPGHTTKRVKMDDVAYVPGISRNLLS 417
            C+NCGK GH+ RDCRA ++     N  A + A + +       E G   AM+  +     E W  DSG++FH +  R  M  Y     G  V +AD+ TL++ G G I + +  P  TT   K+  V ++PG+ RNL+S
Sbjct:  830 CYNCGKKGHFKRDCRAPKK-----NTGAQESANMTE-------ETGD--AMI-LSVNSPIESWILDSGASFHSTPCREIMENYVSGDFGK-VHLADDETLKIVGKGDIRLKL--PNQTTW--KLTGVRHIPGLKRNLIS 948

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BLAST of mRNA_H-elongata_contig181469.4857.1 vs. uniprot
Match: A0A6A3B0Z1_HIBSY (CCHC-type domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3B0Z1_HIBSY)

HSP 1 Score: 63.5 bits (153), Expect = 5.230e-9
Identity = 46/139 (33.09%), Postives = 70/139 (50.36%), Query Frame = 1

Query:    1 CFNCGKGGHYARDCRASEESGATDNRKAAKGAILAKLTVPAVPEVGTIAAMVGAACGDRKEEWESDSGSTFHMSHTRAGMSAYKKASPGMTVEIADENTLQVDGFGRIEMDVDQPGHTTKRVKMDDVAYVPGISRNLLS 417
            C+NCGK GH+ RDCRA ++     N  A + A + + T  A+            +     E W  DSG++FH +  +  M  Y     G  V +AD+ TL++ G G I + +  P  TT   K+  V ++PG+ RNL+S
Sbjct:  401 CYNCGKKGHFKRDCRAPKK-----NTGAQESANMTEETSDAMI----------LSVNSPIESWILDSGASFHSTSCQEIMENYVSGDFGK-VHLADDETLKIVGKGDIRLKL--PNQTTW--KLTGVRHIPGLKRNLIS 519

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BLAST of mRNA_H-elongata_contig181469.4857.1 vs. uniprot
Match: A0A6A3BGE7_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BGE7_HIBSY)

HSP 1 Score: 63.5 bits (153), Expect = 5.300e-9
Identity = 47/140 (33.57%), Postives = 72/140 (51.43%), Query Frame = 1

Query:    1 CFNCGKGGHYARDCRA-SEESGATDNRKAAKGAILAKLTVPAVPEVGTIAAMVGAACGDRKEEWESDSGSTFHMSHTRAGMSAYKKASPGMTVEIADENTLQVDGFGRIEMDVDQPGHTTKRVKMDDVAYVPGISRNLLS 417
            C+NCGK GH+ RDCRA  +++GA ++    +             E G   AM+  +     E W  DSG++FH +  +  M  Y     G  V +AD+ TL++ G G I + +  P  TT   K+  V ++PG+ RNL+S
Sbjct:  233 CYNCGKKGHFKRDCRALKKDTGAQESANVTE-------------ETGD--AMI-LSVNSPIESWILDSGASFHSTPCQEIMENYVSGDFGK-VHLADDETLKIVGKGDIRLKL--PNQTTW--KLTGVRHIPGLKRNLIS 351

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BLAST of mRNA_H-elongata_contig181469.4857.1 vs. uniprot
Match: A0A6A3D2M2_HIBSY (Cytochrome P450 90B1 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3D2M2_HIBSY)

HSP 1 Score: 63.5 bits (153), Expect = 5.330e-9
Identity = 47/140 (33.57%), Postives = 72/140 (51.43%), Query Frame = 1

Query:    1 CFNCGKGGHYARDCRA-SEESGATDNRKAAKGAILAKLTVPAVPEVGTIAAMVGAACGDRKEEWESDSGSTFHMSHTRAGMSAYKKASPGMTVEIADENTLQVDGFGRIEMDVDQPGHTTKRVKMDDVAYVPGISRNLLS 417
            C+NCGK GH+ RDCRA  +++GA ++    +             E G   AM+  +     E W  DSG++FH +  +  M  Y     G  V +AD+ TL++ G G I + +  P  TT   K+  V ++PG+ RNL+S
Sbjct:  557 CYNCGKKGHFKRDCRALKKDTGAQESANVTE-------------ETGD--AMI-LSVNSPIESWILDSGASFHSTPCQEIMENYVSGDFGK-VHLADDETLKIVGKGDIRLKL--PNQTTW--KLTGVRHIPGLKRNLIS 675

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BLAST of mRNA_H-elongata_contig181469.4857.1 vs. uniprot
Match: A0A6A3CZB7_HIBSY (Histidine kinase 5 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3CZB7_HIBSY)

HSP 1 Score: 63.5 bits (153), Expect = 5.420e-9
Identity = 47/140 (33.57%), Postives = 72/140 (51.43%), Query Frame = 1

Query:    1 CFNCGKGGHYARDCRA-SEESGATDNRKAAKGAILAKLTVPAVPEVGTIAAMVGAACGDRKEEWESDSGSTFHMSHTRAGMSAYKKASPGMTVEIADENTLQVDGFGRIEMDVDQPGHTTKRVKMDDVAYVPGISRNLLS 417
            C+NCGK GH+ RDCRA  +++GA ++    +             E G   AM+  +     E W  DSG++FH +  +  M  Y     G  V +AD+ TL++ G G I + +  P  TT   K+  V ++PG+ RNL+S
Sbjct: 1078 CYNCGKKGHFKRDCRALKKDTGAQESANVTE-------------ETGD--AMI-LSVNSPIESWILDSGASFHSTPCQEIMENYVSGDFGK-VHLADDETLKIVGKGDIRLKL--PNQTTW--KLTGVRHIPGLKRNLIS 1196

[Close]

BLAST of mRNA_H-elongata_contig181469.4857.1 vs. uniprot
Match: A0A6A3D123_HIBSY (CCHC-type domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3D123_HIBSY)

HSP 1 Score: 63.2 bits (152), Expect = 7.090e-9
Identity = 49/140 (35.00%), Postives = 75/140 (53.57%), Query Frame = 1

Query:    1 CFNCGKGGHYARDCRASEES-GATDNRKAAKGAILAKLTVPAVPEVGTIAAMVGAACGDRKEEWESDSGSTFHMSHTRAGMSAYKKASPGMTVEIADENTLQVDGFGRIEMDVDQPGHTTKRVKMDDVAYVPGISRNLLS 417
            C+NCGK GH+ RDCRA +++ GA ++         A +T     E G   AM+  +     E W  DSG++FH +  +  M  Y  +  G  V +AD+ TL++ G G I + +  P  TT   K+  V ++PG+ RNL+S
Sbjct:  139 CYNCGKKGHFKRDCRAPKKNTGAQES---------ANMT----DETGD--AMI-LSVNSPIESWILDSGASFHSTPCQEIMENYVSSDFGK-VHLADDETLKIVGKGDIRLKL--PNQTTW--KLTGVRHIPGLKRNLIS 257

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig181469.4857.1 vs. uniprot

BLAST of mRNA_H-elongata_contig181469.4857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6A2XKG3_HIBSY	2.100e-9	34.53	Uncharacterized protein n=1 Tax=Hibiscus syriacus ...	[more]
A0A6A3BK95_HIBSY	2.790e-9	35.25	Uncharacterized protein n=1 Tax=Hibiscus syriacus ...	[more]
A0A6A2W9F3_HIBSY	2.850e-9	35.25	Uncharacterized protein n=1 Tax=Hibiscus syriacus ...	[more]
A0A6A2WXJ4_HIBSY	2.890e-9	35.25	F-box family protein n=1 Tax=Hibiscus syriacus Tax...	[more]
A0A6A3AJH8_HIBSY	2.900e-9	35.25	Ion channel CASTOR n=1 Tax=Hibiscus syriacus TaxID...	[more]
A0A6A3B0Z1_HIBSY	5.230e-9	33.09	CCHC-type domain-containing protein n=1 Tax=Hibisc...	[more]
A0A6A3BGE7_HIBSY	5.300e-9	33.57	Uncharacterized protein n=1 Tax=Hibiscus syriacus ...	[more]
A0A6A3D2M2_HIBSY	5.330e-9	33.57	Cytochrome P450 90B1 n=1 Tax=Hibiscus syriacus Tax...	[more]
A0A6A3CZB7_HIBSY	5.420e-9	33.57	Histidine kinase 5 n=1 Tax=Hibiscus syriacus TaxID...	[more]
A0A6A3D123_HIBSY	7.090e-9	35.00	CCHC-type domain-containing protein n=1 Tax=Hibisc...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig181469	contig	H-elongata_contig181469:696..1226 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	61.2
Seed ortholog evalue	4.3e-07
Seed eggNOG ortholog	164328.Phyra85763
EggNOG free text desc.	transposition, RNA-mediated
EggNOG OGs	3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.	L
Best tax level	Peronosporales
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	2
Model size	417
Cds size	417
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930046.4115558-CDS-H-elongata_contig181469:695..777	1622930046.4115558-CDS-H-elongata_contig181469:695..777	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig181469 696..777 +
1691679259.9496517-CDS-H-elongata_contig181469:695..777	1691679259.9496517-CDS-H-elongata_contig181469:695..777	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig181469 696..777 +
1622930046.4302866-CDS-H-elongata_contig181469:891..1226	1622930046.4302866-CDS-H-elongata_contig181469:891..1226	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig181469 892..1226 +
1691679259.9585123-CDS-H-elongata_contig181469:891..1226	1691679259.9585123-CDS-H-elongata_contig181469:891..1226	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig181469 892..1226 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig181469.4857.1	prot_H-elongata_contig181469.4857.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig181469 696..1226 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig181469:696..1226+
coding sequence from alignment at H-elongata_contig181469:696..1226+

protein sequence of mRNA_H-elongata_contig181469.4857.1

>prot_H-elongata_contig181469.4857.1 ID=prot_H-elongata_contig181469.4857.1|Name=mRNA_H-elongata_contig181469.4857.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
CFNCGKGGHYARDCRASEESGATDNRKAAKGAILAKLTVPAVPEVGTIAA
MVGAACGDRKEEWESDSGSTFHMSHTRAGMSAYKKASPGMTVEIADENTL
QVDGFGRIEMDVDQPGHTTKRVKMDDVAYVPGISRNLLS

mRNA from alignment at H-elongata_contig181469:696..1226+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig181469.4857.1 ID=mRNA_H-elongata_contig181469.4857.1|Name=mRNA_H-elongata_contig181469.4857.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=531bp|location=Sequence derived from alignment at H-elongata_contig181469:696..1226+ (Himanthalia elongata Himel1 dioecious)
TGTTTCAATTGCGGAAAAGGAGGACACTACGCTCGGGACTGCAGGGCGAG
TGAGGAATCAGGGGCCACTGACAACAGGAAAGGTGGTGGCAGCTGCAAGT
GTTACATCAGTGGGAGTGAGAAGCACCTTGCGCACAAGCACTGTGGGCTG
TGCAAAAGTCTTAAGCACCGGACGCAAAACTGTAAGGAGCACGGAGCTGC
AAAAGGCGCAATCCTGGCAAAACTGACTGTGCCGGCAGTCCCCGAGGTGG
GGACGATAGCAGCAATGGTGGGAGCAGCTTGTGGCGATAGGAAGGAGGAA
TGGGAATCGGATTCAGGCTCCACATTCCACATGTCGCACACCCGGGCCGG
AATGTCTGCGTACAAGAAGGCGTCGCCGGGGATGACCGTTGAGATCGCCG
ACGAGAACACTCTACAGGTGGACGGGTTCGGAAGAATTGAGATGGATGTG
GACCAACCGGGTCACACAACCAAGAGGGTGAAGATGGACGATGTTGCGTA
TGTGCCAGGAATTTCGCGGAACCTGCTATCT

Coding sequence (CDS) from alignment at H-elongata_contig181469:696..1226+

>mRNA_H-elongata_contig181469.4857.1 ID=mRNA_H-elongata_contig181469.4857.1|Name=mRNA_H-elongata_contig181469.4857.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig181469:696..1226+ (Himanthalia elongata Himel1 dioecious)
TGTTTCAATTGCGGAAAAGGAGGACACTACGCTCGGGACTGCAGGGCGAG
TGAGGAATCAGGGGCCACTGACAACAGGAAAGTGTTTCAATTGCGGAAAA
GGAGGACACTACGCTCGGGACTGCAGGGCGAGTGAGGAATCAGGGGCCAC
TGACAACAGGAAAGCTGCAAAAGGCGCAATCCTGGCAAAACTGACTGTGC
CGGCAGTCCCCGAGGTGGGGACGATAGCAGCAATGGTGGGAGCAGCTTGT
GGCGATAGGAAGGAGGAATGGGAATCGGATTCAGGCTCCACATTCCACAT
GTCGCACACCCGGGCCGGAATGTCTGCGTACAAGAAGGCGTCGCCGGGGA
TGACCGTTGAGATCGCCGACGAGAACACTCTACAGGTGGACGGGTTCGGA
AGAATTGAGATGGATGTGGACCAACCGGGTCACACAACCAAGAGGGTGAA
GATGGACGATGTTGCGTATGTGCCAGGAATTTCGCGGAACCTGCTATCTC
TGCAAAAGGCGCAATCCTGGCAAAACTGACTGTGCCGGCAGTCCCCGAGG
TGGGGACGATAGCAGCAATGGTGGGAGCAGCTTGTGGCGATAGGAAGGAG
GAATGGGAATCGGATTCAGGCTCCACATTCCACATGTCGCACACCCGGGC
CGGAATGTCTGCGTACAAGAAGGCGTCGCCGGGGATGACCGTTGAGATCG
CCGACGAGAACACTCTACAGGTGGACGGGTTCGGAAGAATTGAGATGGAT
GTGGACCAACCGGGTCACACAACCAAGAGGGTGAAGATGGACGATGTTGC
GTATGTGCCAGGAATTTCGCGGAACCTGCTATCT