mRNA_H-elongata_contig100480.49.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100480.49.1
Unique NamemRNA_H-elongata_contig100480.49.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: A0A6H5JWM1_9PHAE (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM1_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 2.570e-42
Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = 1 
Query:   13 QQEPPECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQVL 243
            + EPPECRVCRGEPEP RRLY+PCLCSGSIMHTHEDCLLEWL+HSGKD+CELCGA+FRFTPVYDP AP  VP+YQVL
Sbjct:   61 EDEPPECRVCRGEPEPGRRLYAPCLCSGSIMHTHEDCLLEWLQHSGKDTCELCGALFRFTPVYDPGAPTCVPLYQVL 137
[Close]
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: D8LBR1_ECTSI (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR1_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 6.510e-42
Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = 1 
Query:   13 QQEPPECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQVL 243
            + EPPECRVCRGEPEP RRLY+PCLCSGSIMHTHEDCLLEWL+HSGKD+CELCGA+FRFTPVYD  APQ VP+YQVL
Sbjct:   61 EDEPPECRVCRGEPEPGRRLYAPCLCSGSIMHTHEDCLLEWLQHSGKDTCELCGALFRFTPVYDAGAPQRVPLYQVL 137
[Close]
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: A0A835YNH4_9STRA (RING-CH-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH4_9STRA)

HSP 1 Score: 124 bits (310), Expect = 4.070e-31
Identity = 53/71 (74.65%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:   28 ECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQV 240
            ECRVCRGEPE  RRLY+PCLCSGSIM+ HEDCL +WL HS KDSCELCG  F FTPVY PDAP  +P +QV
Sbjct:   48 ECRVCRGEPELGRRLYAPCLCSGSIMYIHEDCLQQWLAHSKKDSCELCGHTFAFTPVYAPDAPALLPAWQV 118
[Close]
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: A0A7S2RW40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RW40_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.490e-28
Identity = 47/73 (64.38%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:   28 ECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQVLR 246
            ECRVCRG  E  R+L++PCLCSGSIM+ H++CLL+WLKHSGKD CELCG  F+F PVY  DAP  +PV++++R
Sbjct:   16 ECRVCRGPEEEGRKLFAPCLCSGSIMYCHQECLLQWLKHSGKDRCELCGHQFQFNPVYAEDAPTQLPVHRIVR 88
[Close]
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: A0A225X148_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X148_9STRA)

HSP 1 Score: 115 bits (287), Expect = 5.160e-28
Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:    7 LFQQEPPECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQVL 243
            L  ++  ECRVCRGE EPDRRL++PC CSGSI  TH DCL +WL+HSGK  CELCG  F FTP+YD DAP  +P  ++L
Sbjct:   18 LDDEDEAECRVCRGEAEPDRRLFAPCKCSGSIRFTHSDCLEQWLEHSGKSFCELCGHEFAFTPLYDADAPDVLPWTELL 96
[Close]
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: D0RMI7_PHYIT (RING-CH-type domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0RMI7_PHYIT)

HSP 1 Score: 113 bits (282), Expect = 7.090e-28
Identity = 47/72 (65.28%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:   28 ECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQVL 243
            ECRVCRGE EPDRRL++PC CSGSI  TH DCL +WL+HSGK  CELCG  F FTP+YD +AP  +P  ++L
Sbjct:   19 ECRVCRGEAEPDRRLFAPCKCSGSIRFTHSDCLEQWLEHSGKSFCELCGHQFTFTPLYDANAPDVLPWTELL 90
[Close]
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: A0A2P4YC57_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YC57_9STRA)

HSP 1 Score: 112 bits (280), Expect = 9.460e-28
Identity = 47/72 (65.28%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:   28 ECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQVL 243
            ECRVCRGE EPDRRL++PC CSGSI  TH DCL +WL+HSGK  CELCG  F FTP+YD +AP  +P  ++L
Sbjct:   28 ECRVCRGEAEPDRRLFAPCKCSGSIRFTHSDCLEQWLEHSGKSFCELCGHEFTFTPLYDANAPDVLPWTELL 99
[Close]
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: A0A5D6Y1M0_9STRA (RING-CH-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1M0_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.440e-27
Identity = 47/68 (69.12%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:   25 PECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVP 228
            PECRVCRGE EPDRRL+ PC CSGSI +TH DCL +WL+HSGK  CELCG  F FTP+YD  AP  +P
Sbjct:   56 PECRVCRGEAEPDRRLFEPCKCSGSIRYTHSDCLEQWLEHSGKAFCELCGHKFAFTPLYDAGAPAVLP 123
[Close]
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: A0A0P1AST3_PLAHL (E3 ubiquitin-protein ligase march6 (Membrane-associated ring finger protein 6) n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AST3_PLAHL)

HSP 1 Score: 112 bits (281), Expect = 3.330e-27
Identity = 49/80 (61.25%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:    4 DLFQQEPPECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQVL 243
            DL   +  ECRVCRGE EPDRRLY+PC CSGSI  TH DCL +WL+HSGK  CELCG  F FTP+Y+ +AP  +P  ++L
Sbjct:   22 DLTDDDEIECRVCRGEAEPDRRLYAPCKCSGSIRFTHSDCLEQWLEHSGKIFCELCGHKFTFTPLYNANAPDVLPWTELL 101
[Close]
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: A0A3M6VPX7_9STRA (RING-CH-type domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPX7_9STRA)

HSP 1 Score: 112 bits (281), Expect = 3.330e-27
Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:    4 DLFQQEPPECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQVL 243
            ++ +++  ECRVCRGE EPDRRL++PC CSGSI +TH DCL +WL HSGK  CELCG  F FTP+YD +AP  +P  ++L
Sbjct:   26 EVEEEDEEECRVCRGEAEPDRRLFAPCKCSGSIRYTHSDCLDQWLTHSGKSFCELCGHEFTFTPLYDANAPDTLPWTELL 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWM1_9PHAE2.570e-4285.71RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
D8LBR1_ECTSI6.510e-4285.71RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
A0A835YNH4_9STRA4.070e-3174.65RING-CH-type domain-containing protein n=1 Tax=Tri... [more]
A0A7S2RW40_9STRA1.490e-2864.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A225X148_9STRA5.160e-2862.03E3 ubiquitin-protein ligase n=1 Tax=Phytophthora m... [more]
D0RMI7_PHYIT7.090e-2865.28RING-CH-type domain-containing protein n=1 Tax=Phy... [more]
A0A2P4YC57_9STRA9.460e-2865.28E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Phy... [more]
A0A5D6Y1M0_9STRA2.440e-2769.12RING-CH-type domain-containing protein n=1 Tax=Pyt... [more]
A0A0P1AST3_PLAHL3.330e-2761.25E3 ubiquitin-protein ligase march6 (Membrane-assoc... [more]
A0A3M6VPX7_9STRA3.330e-2758.75RING-CH-type domain-containing protein n=2 Tax=Per... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100480contigH-elongata_contig100480:1069..1897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.8
Seed ortholog evalue1.7e-35
Seed eggNOG ortholog2880.D8LBR1
KEGG koko:K10661
KEGG Pathwayko04141,map04141
GOsGO:0000176,GO:0000177,GO:0000178,GO:0000209,GO:0000291,GO:0000956,GO:0001101,GO:0002020,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004536,GO:0004540,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0006139,GO:0006259,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006464,GO:0006508,GO:0006511,GO:0006629,GO:0006720,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009414,GO:0009415,GO:0009628,GO:0009698,GO:0009699,GO:0009892,GO:0009893,GO:0009987,GO:0010025,GO:0010033,GO:0010035,GO:0010143,GO:0010166,GO:0010243,GO:0010345,GO:0010467,GO:0010468,GO:0010498,GO:0010605,GO:0010629,GO:0012505,GO:0016020,GO:0016021,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016180,GO:0016567,GO:0016740,GO:0016787,GO:0016788,GO:0019222,GO:0019438,GO:0019439,GO:0019538,GO:0019748,GO:0019787,GO:0019899,GO:0019941,GO:0022613,GO:0030163,GO:0030176,GO:0030433,GO:0031123,GO:0031125,GO:0031126,GO:0031224,GO:0031227,GO:0031624,GO:0031974,GO:0031981,GO:0031984,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0034976,GO:0036211,GO:0036503,GO:0042175,GO:0042221,GO:0042254,GO:0042335,GO:0042802,GO:0043085,GO:0043144,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043628,GO:0043632,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044390,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048856,GO:0050789,GO:0050790,GO:0050896,GO:0051341,GO:0051353,GO:0051603,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070936,GO:0071025,GO:0071027,GO:0071028,GO:0071051,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0098827,GO:0140096,GO:0140097,GO:0140098,GO:1900490,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901568,GO:1901570,GO:1901575,GO:1901576,GO:1901698,GO:1901700,GO:1902494,GO:1905354,GO:1990381,GO:2001215
EggNOG free text desc.chlorophyll binding
EggNOG OGsCOG5183@1,KOG1609@2759
EC2.3.2.27
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929546.9590437-CDS-H-elongata_contig100480:1068..11721622929546.9590437-CDS-H-elongata_contig100480:1068..1172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100480 1069..1172 +
1691679063.7353487-CDS-H-elongata_contig100480:1068..11721691679063.7353487-CDS-H-elongata_contig100480:1068..1172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100480 1069..1172 +
1622929546.9719703-CDS-H-elongata_contig100480:1755..18971622929546.9719703-CDS-H-elongata_contig100480:1755..1897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100480 1756..1897 +
1691679063.7484808-CDS-H-elongata_contig100480:1755..18971691679063.7484808-CDS-H-elongata_contig100480:1755..1897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100480 1756..1897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100480.49.1prot_H-elongata_contig100480.49.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100480 1069..1897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100480.49.1

>prot_H-elongata_contig100480.49.1 ID=prot_H-elongata_contig100480.49.1|Name=mRNA_H-elongata_contig100480.49.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
IDLFQQEPPECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSG
KDSCELCGAMFRFTPVYDPDAPQFVPVYQVLR
back to top

mRNA from alignment at H-elongata_contig100480:1069..1897+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100480.49.1 ID=mRNA_H-elongata_contig100480.49.1|Name=mRNA_H-elongata_contig100480.49.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=829bp|location=Sequence derived from alignment at H-elongata_contig100480:1069..1897+ (Himanthalia elongata Himel1 dioecious)
ATTGATTTATTCCAGCAGGAGCCGCCGGAGTGTCGAGTGTGCAGGGGAGA
GCCCGAGCCCGACCGCCGCTTGTACTCCCCATGTCTTTGCAGCGGGTCGA
TAATGTACGTTACTCCCGGCTCCGCTCTACTCGTGGGCTGTTTCTCTCCC
CCCCCCCAACCCCTATGTTGATTTGTTTATGTCGTCGTCCTGCAAGGAAA
CCAACTCGCAACATAGTGCACAACTTGTTTTCAGAAGCCGTCGCGATTTG
TGGCCCGAGAACCCGACAGCTGCTGCTGCTGCTGCTGCTGTTTGTTATTT
TGGTTTACTGTACTGAAGTAATTCATGGATGCTGGCAGTTGTGCAGAGGT
AAATATGTTTACAATAATAGTGGTTGTAAATGACGCGATTGATTGGTTCA
TTGATTCATTGATTGACCAAATGTGCTTGCGCGTGTTTCATTGCATTTGG
ACCCACTACAGAGCGTAAAGTAGTGGCTGGCGTTTTTCCAATCTTGCCAA
TTCTATTTTCAATGCAAAACATAAGTTAACCGGTCAGCGTGGCGGTTCCC
ATGGCGTCCGCTGCACCATCCACCACCCTCGGGGGTTGGAAAAAACAAAA
CAACCCGGAACGCACTCTACGATGCTGTAAAGTAGCTAATGCCCGAAACC
CGACCGGCCACGAATCGACCCGTCCCGCTGTCTGAAGGCACACCCACGAA
GACTGCCTCCTGGAGTGGCTGAAACACAGCGGCAAGGACAGCTGCGAGCT
GTGCGGGGCCATGTTTCGCTTCACACCAGTGTACGATCCCGATGCACCGC
AGTTCGTTCCGGTGTACCAGGTACTTCGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig100480:1069..1897+

>mRNA_H-elongata_contig100480.49.1 ID=mRNA_H-elongata_contig100480.49.1|Name=mRNA_H-elongata_contig100480.49.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig100480:1069..1897+ (Himanthalia elongata Himel1 dioecious)
ATTGATTTATTCCAGCAGGAGCCGCCGGAGTGTCGAGTGTGCAGGGGAGA
GCCCGAGCCCGACCGCCGCTTGTACTCCCCATGTCTTTGCAGCGGGTCGA
TAATATTGATTTATTCCAGCAGGAGCCGCCGGAGTGTCGAGTGTGCAGGG
GAGAGCCCGAGCCCGACCGCCGCTTGTACTCCCCATGTCTTTGCAGCGGG
TCGATAATGCACACCCACGAAGACTGCCTCCTGGAGTGGCTGAAACACAG
CGGCAAGGACAGCTGCGAGCTGTGCGGGGCCATGTTTCGCTTCACACCAG
TGTACGATCCCGATGCACCGCAGTTCGTTCCGGTGTACCAGGTACTTCGA
GCACACCCACGAAGACTGCCTCCTGGAGTGGCTGAAACACAGCGGCAAGG
ACAGCTGCGAGCTGTGCGGGGCCATGTTTCGCTTCACACCAGTGTACGAT
CCCGATGCACCGCAGTTCGTTCCGGTGTACCAGGTACTTCGA
back to top