mRNA_H-elongata_contig1813.4848.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1813.4848.1
Unique NamemRNA_H-elongata_contig1813.4848.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1813.4848.1 vs. uniprot
Match: B1N8E9_9PHAE (Glutathione S-transferase 4 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E9_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 2.130e-56
Identity = 97/199 (48.74%), Postives = 139/199 (69.85%), Query Frame = 1
Query:   49 PISLYYFNVPGRGEAIRIALVLGGIEFNDKHLTYQELSASKFKYVPVLQINGTNYSQSTSLLRYVGTLVGLFPKDPLEALKVDEVVMTAEDLFIAIAATMVIKDPEKKLEARKAAAEGKIKEVLETLEAKKSTSPSSKFFFGESITIADLIIHAIVMSLECGELDGIPTTIVSDWAPSLKNIHIEVMENPKVKEWYSSK 645
            P    YF +P RGEA R+AL + G+++ DK ++++E  A +FK +PV Q++GT+Y+QST+LLRY G L G +P+ PL +LKVDE+VM AED+FI + +TM  KD  KKLE  +    GKIK++LE +  K   +  S F  G S+TIAD+ +HA++ +++ G L GIPTT+V D  PSLK +   VME+PKVK +Y+SK
Sbjct:    2 PAVFNYFGIPARGEATRVALAVAGVDYEDKRMSFEEFGACEFKTLPVYQMDGTDYTQSTALLRYAGKLGGQYPECPLASLKVDEIVMIAEDVFINLFSTMGEKDEAKKLEKCQTLMAGKIKDLLEDIARKVEANKCSTFCVGASLTIADIQVHAVIATVQAGFLTGIPTTMVEDICPSLKALDHAVMEHPKVKAYYASK 200          
BLAST of mRNA_H-elongata_contig1813.4848.1 vs. uniprot
Match: D7G537_ECTSI (Glutathione S-transferase n=4 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G537_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 1.720e-46
Identity = 93/204 (45.59%), Postives = 130/204 (63.73%), Query Frame = 1
Query:   40 MTAPISLYYFNVPGRGEAIRIALVLGGIEFNDKHLTYQELSASKF--KYVPVLQINGTNYSQSTSLLRYVGTLVGLFPKDPLEALKVDEVVMTAEDLFIAIAATMVIKDPEKKLEARKAAAEGKIKEVLETLEAKKSTSPSSKFFFGESITIADLIIHAIVMSLECGELDGIPTTIVSDWAPSLKNIHIEVMENPKVKEWYSSK 645
            M +  +L YF +PGRGEA R+AL   G +F D  + + E  A K+  K +PVL+++   Y+QST+LLRY G L GL+P D L ALKVDE+VM AED+   +   M  +D        K   EGKIK ++  L AK + +PSSKFF G S TIADL +HA++ + E   L G+PTT ++D AP+L  +   ++E+PKVK +Y+SK
Sbjct:    1 MPSTATLNYFGLPGRGEATRVALAYAGKDFEDNRMGFPEYGACKWAGKGLPVLEMDDAEYTQSTALLRYAGKLGGLYPDDALAALKVDEIVMIAEDVMANMFKCMGQEDDT----VAKEVLEGKIKTLVGMLVAKLAANPSSKFFVGNSPTIADLQVHAVIKNFEANFLTGLPTTHIADTAPTLMEMQAALLEDPKVKAYYASK 200          
BLAST of mRNA_H-elongata_contig1813.4848.1 vs. uniprot
Match: D7G5G1_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G1_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 9.670e-37
Identity = 83/198 (41.92%), Postives = 121/198 (61.11%), Query Frame = 1
Query:   40 MTAPISLYYFNVPGRGEAIRIALVLGGIEFNDKHLTYQELSASKFKYV--PVLQINGTNYSQSTSLLRYVGTLVGLFPKDPLEALKVDEVVMTAEDLFIAIAATMVIKDPEKKLEARKAAAEGKIKEVLETLEAKKSTSPSSKFFFGESITIADLI--IHAIVMSLECGELDGIPTTIVSDWAPSLKNIHIEVMENPK 621
            M +  +L+YF+ PGR EA R+AL   G +F D  + + E  ASK+  +  PVL+++   Y+QST+LLRY G L GL+P D L ALKVDE+VM AED+   +   +  KD            EGKIK ++E L ++ + + SSKFF G   TIADL   +HA++ + E   L G+PTT ++D AP+L  +   ++E+PK
Sbjct:    1 MPSTATLHYFDDPGRAEATRVALAYAGKDFEDNIMGFPEYGASKWAGIGLPVLEMDDAEYTQSTALLRYAGKLGGLYPDDALAALKVDEIVMIAEDVMANMFKCVDQKDDT----MANGLLEGKIKTLVEMLTSRLAANASSKFFVGHPPTIADLQARVHAVIKNFEANFLTGLPTTHIADTAPTLMEMQAALLEDPK 194          
BLAST of mRNA_H-elongata_contig1813.4848.1 vs. uniprot
Match: A0A6H5JNS9_9PHAE (GST C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS9_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 6.640e-36
Identity = 80/186 (43.01%), Postives = 117/186 (62.90%), Query Frame = 1
Query:   76 PGRGEAIRIALVLGGIEFNDKHLTYQELSASKF--KYVPVLQINGTNYSQSTSLLRYVGTLVGLFPKDPLEALKVDEVVMTAEDLFIAIAATMVIKDPEKKLEARKAAAEGKIKEVLETLEAKKSTSPSSKFFFGESITIADLIIHAIVMSLECGELDGIPTTIVSDWAPSLKNIHIEVMENPKVK 627
            PGRGEA  +AL  GG +F D  + + E  A K+  K +PVL+++   Y QST+LLRY G + GL+P D L AL+VDE+VM AED+   +   M   D        K   EGKIK ++E L AK +T+ SSKFF G S TIA+L +HA++ + E   L  +PTT+++D AP++  + + ++++PK K
Sbjct:   55 PGRGEATGVALAYGGKDFVDNTMGFSEHGACKWAGKGLPVLEMDDAEYFQSTALLRYAGKMGGLYPDDALAALEVDEIVMIAEDVLTNMFKCMGQTDDT----VAKGVLEGKIKTLVEMLVAKLATNQSSKFFVGNSPTIANLQVHAVIKNFEANFLTDLPTTLIADTAPTVMEMEVALLQDPKEK 236          
BLAST of mRNA_H-elongata_contig1813.4848.1 vs. uniprot
Match: D7G5G0_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G0_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 3.880e-33
Identity = 76/155 (49.03%), Postives = 100/155 (64.52%), Query Frame = 1
Query:   40 MTAPISLYYFNVPGRGEAIRIALVLGGIEFNDKHLTYQELSASKF--KYVPVLQINGTNYSQSTSLLRYVGTLVGLFPKDPLEALKVDEVVMTAEDLFIAIAATMVIKDPEKKLEARKAAAEGKIKEVLETLEAKKSTSPSSKFFFGESITIADL 498
            M++  +L YF +PGR EA R+AL   G EF+DK LT+ E  A K+  K +PVLQ++G  Y+QST+LLRY G L GL+P D L ALKVDE+VM  ED+   +   M  +D        K   EGK+K ++E L +K + +PSSKFF G S TIADL
Sbjct:    1 MSSTPTLNYFELPGRAEATRVALAYAGKEFDDKRLTFPEYGACKWAGKGLPVLQMDGAEYTQSTALLRYAGKLGGLYPDDALAALKVDEIVMIGEDILANMFKCMGAEDDT----VAKGVLEGKVKGLVELLVSKLAANPSSKFFVGTSPTIADL 151          
BLAST of mRNA_H-elongata_contig1813.4848.1 vs. uniprot
Match: A6G3Q7_9DELT (Glutathione S-transferase-like protein n=1 Tax=Plesiocystis pacifica SIR-1 TaxID=391625 RepID=A6G3Q7_9DELT)

HSP 1 Score: 124 bits (311), Expect = 9.250e-31
Identity = 77/208 (37.02%), Postives = 119/208 (57.21%), Query Frame = 1
Query:   40 MTAP-ISLYYFNVPG-RGEAIRIALVLGGIEFNDKHLTYQELSASK--FKY--VPVLQINGTNYSQSTSLLRYVGTLVGLFPKDPLEALKVDEVVMTAEDLFIAIAATMVIKDPEKKLEARKAAAEGKIKEVLETLEAKKSTSPSSKFFFGESITIADLIIHAIVMSLECGELDGIPTTIVSDWAPSLKNIHIEVMENPKVKEWYSSK 645
            MT P +++ YF+V G RGEA R+AL +GGI F D  L + E  A K  F Y  +P L ++G   ++S  + RYV TL GL+P DP+E L+ DE++  AED+   I  +M + D E K  AR+A        V   L  +      +++F GE++TIAD+ +   + +   G  D IPT +V   AP+L      V+ +PK++E+Y+++
Sbjct:    1 MTHPDLAITYFDVDGGRGEAARLALFIGGIPFKDDRLAFPEFGARKSSFPYGKIPTLTVDGVEIAESVGINRYVATLAGLYPADPIEGLRCDEILSVAEDMSNLIGPSMRMPDGEAKQAAREALVANDYPRVFAQLARRLG---DNQWFVGETMTIADIRVFVFLRAFAFGAFDHIPTDLVPRLAPTLAAHSERVLAHPKIREYYAAR 205          
BLAST of mRNA_H-elongata_contig1813.4848.1 vs. uniprot
Match: A0A1S8VHC2_9FUNG (Uncharacterized protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VHC2_9FUNG)

HSP 1 Score: 124 bits (310), Expect = 1.330e-30
Identity = 72/200 (36.00%), Postives = 120/200 (60.00%), Query Frame = 1
Query:   52 ISLYYFNVPGRGEAIRIALVLGGIEFNDKHLTYQELSASK----FKYVPVLQING-TNYSQSTSLLRYVGTLVGLFPK-DPLEALKVDEVVMTAEDLFIAIAATMVIKDPEKKLEARKAAAEGKIKEVLETLEAKKSTSPSSKFFFGESITIADLIIHAIVMSLECGELDGIPTTIVSDWAPSLKNIHIEVMENPKVKEW 633
            + L YF +  R EA R+AL +GG+ F D+ ++ +   A K    F  +P+L ING T  +QS ++LRY G+L GL+P  DP++A  VD++VM  ED+   + +T+  KDPE K++ RK  A+ K   + ++LE       S K+  G+SI++ADL I+ +++ ++ G  DG+P  +   +   +  ++  V+ +PKV EW
Sbjct:    8 LKLTYFGIRARAEASRLALYVGGVPFEDERVSGEGWGAMKQATPFGQLPLLTINGSTQIAQSNAILRYAGSLGGLYPAADPIKAALVDQIVMHIEDMSNTVYSTVREKDPEVKMQQRKVIAQDKYPAMFKSLEQVIEKHSSGKWAVGDSISVADLAIYVLIVLIKTGIWDGVPVDVADSFV-RVSAVYTAVLTHPKVAEW 206          
BLAST of mRNA_H-elongata_contig1813.4848.1 vs. uniprot
Match: A0A8K1CB83_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CB83_PYTOL)

HSP 1 Score: 127 bits (319), Expect = 4.760e-30
Identity = 78/203 (38.42%), Postives = 121/203 (59.61%), Query Frame = 1
Query:   40 MTAPISLYYFNVPGRGEAIRIALVLGGIEFNDKHLTYQELS----ASKFKYVPVLQINGTNYSQSTSLLRYVGTLVGLFPKDPL-EALKVDEVVMTAEDLFIAIAATMVIKDPEKKLEARKAAAEGKIKEVLETLEAKKSTSPSSKFFFGESITIADLIIHAIVMSLECGELDGIPTTIVSDWAPSLKNIHIEVMENPKVKEW 633
            +T  + L YFN PGR E IR+A +LGG+EF D+ + + ++     A  F  VP L I+G  +SQS  +LRY GT  GL+P   L +AL+VDEV+   +DL  A++ T  + +PE +L ARK  A+    ++L  L+ K+      K+  G  +TIADL I++ ++  + G L GIP T+   ++  ++ I+ +VM  P V+EW
Sbjct:  211 VTPKLKLTYFNGPGRAEPIRLAFLLGGVEFEDERIEFGDMEKLRPALPFGQVPTLSIDGEIHSQSLQILRYAGTRAGLYPSTDLKQALRVDEVLCLFDDLHNAVSLTYPM-EPETQLAARKVLAQETFPKLLGALD-KRIAGWGGKYAVGNELTIADLAIYSSILGFKDGHLTGIPATVTDSYSHIVR-IYEQVMNLPTVQEW 410          
BLAST of mRNA_H-elongata_contig1813.4848.1 vs. uniprot
Match: T0QG46_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QG46_SAPDV)

HSP 1 Score: 122 bits (306), Expect = 4.770e-30
Identity = 75/204 (36.76%), Postives = 116/204 (56.86%), Query Frame = 1
Query:   52 ISLYYFNVPGRGEAIRIALVLGGIEFNDKHLTYQELSASK----FKYVPVLQINGTNYSQSTSLLRYVGTLVGLFP-KDPLEALKVDEVVMTAEDLFIAIAATMVIKDPEKKLEARKAAAEGKIKEVLETLEAKK-STSPSSKFFFGESITIADLIIHAIVMSLECGELDGIPTTIVSDWAPSLKNIHIEVMENPKVKEWYSSK 645
            + L YFN PGR E  R+AL L  I F D+ ++Y E  A K    F+ +P L ++G  ++QS  + RYVG L GL+P  DPL A +VDEV+  ++D+   +  ++  +D EKKL  RKA A   +  +   LEA+  + +    F  GE++++AD+ +  + +S+    +DGIPTTI   + P    I   V   PKV+ WY+ +
Sbjct:    6 LKLTYFNAPGRAELTRLALFLHDIPFEDERISYNEFMARKPSLPFQQLPTLTVDGEVFAQSHGMARYVGHLTGLYPMSDPLGAYRVDEVLAASDDIVNKLIPSLFERDMEKKLAMRKALAAETLPTLYACLEARLVAANAKGPFLLGETLSLADIELFVMRLSMRSRHMDGIPTTICDKY-PRWNAIADAVAVLPKVQAWYAQR 208          
BLAST of mRNA_H-elongata_contig1813.4848.1 vs. uniprot
Match: A0A1V9ZC73_9STRA (Glutathione S-transferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZC73_9STRA)

HSP 1 Score: 122 bits (306), Expect = 5.030e-30
Identity = 76/206 (36.89%), Postives = 121/206 (58.74%), Query Frame = 1
Query:   40 MTAP--ISLYYFNVPGRGEAIRIALVLGGIEFNDKHLTYQELSASK----FKYVPVLQINGTNYSQSTSLLRYVGTLVGLFPKDPLEALKVDEVVMTAEDLFIAIAATMVIKDPEKKLEARKAAAEGKIKEVLETLEAKKSTSP--SSKFFFGESITIADLIIHAIVMSLECGELDGIPTTIVSDWAPSLKNIHIEVMENPKVKEW 633
            MTAP  I L YFN+ GR E  R+AL +GGIEF D+ L+   ++  K    +  +PVL ++G  ++QS+++ RY G L GL+P DPL AL+VDEV+  A+D+F  +  T+   D  K++  R+  AE K+  +   LE + + +      F  G S+T+ADL ++  +  ++ G  +G+PTT+  + A +   I   V  +PKV+ W
Sbjct:    1 MTAPRVIKLTYFNLTGRAEIARLALHIGGIEFEDERLSRAVVAERKAILPYGQLPVLTVDGRVFAQSSAIARYAGALSGLYPTDPLAALQVDEVLEHAKDIFDTLVPTLREPDAAKRIAMRQELAERKVAPMCAALERRVAATKVFPGDFLLGSSLTLADLELYLTMGLVKSGWFEGLPTTLCDNHA-TWGGIAQSVARHPKVQSW 205          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1813.4848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B1N8E9_9PHAE2.130e-5648.74Glutathione S-transferase 4 n=1 Tax=Laminaria digi... [more]
D7G537_ECTSI1.720e-4645.59Glutathione S-transferase n=4 Tax=Ectocarpus silic... [more]
D7G5G1_ECTSI9.670e-3741.92Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
A0A6H5JNS9_9PHAE6.640e-3643.01GST C-terminal domain-containing protein n=1 Tax=E... [more]
D7G5G0_ECTSI3.880e-3349.03Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
A6G3Q7_9DELT9.250e-3137.02Glutathione S-transferase-like protein n=1 Tax=Ple... [more]
A0A1S8VHC2_9FUNG1.330e-3036.00Uncharacterized protein n=1 Tax=Batrachochytrium s... [more]
A0A8K1CB83_PYTOL4.760e-3038.42Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
T0QG46_SAPDV4.770e-3036.76Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A1V9ZC73_9STRA5.030e-3036.89Glutathione S-transferase n=1 Tax=Achlya hypogyna ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1813contigH-elongata_contig1813:11017..14722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.6
Seed ortholog evalue2.6e-29
Seed eggNOG ortholog36331.EPrPI00000020200
KEGG rclassRC00004,RC00069,RC00672,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799,ko:K04097
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR02266,R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00590,ko00980,ko00982,ko00983,ko01100,ko01524,ko05200,ko05204,ko05225,ko05418,map00480,map00590,map00980,map00982,map00983,map01100,map01524,map05200,map05204,map05225,map05418
GOsGO:0008150,GO:0010033,GO:0014070,GO:0042221,GO:0042493,GO:0045472,GO:0046677,GO:0050896,GO:0097327,GO:1901654,GO:1901700,GO:1904643
EggNOG free text desc.Glutathione S-transferase. Source PGD
EggNOG OGs1MFV7@121069,KOG1695@1,KOG1695@2759
EC2.5.1.18,5.3.99.2
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000
Hectar predicted targeting categoryother localisation
Exons6
Model size926
Cds size612
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1813.4848.1prot_H-elongata_contig1813.4848.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1813 11056..14447 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930044.9957833-UTR-H-elongata_contig1813:11016..110551622930044.9957833-UTR-H-elongata_contig1813:11016..11055Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1813 11017..11055 +
1691679259.4178073-UTR-H-elongata_contig1813:11016..110551691679259.4178073-UTR-H-elongata_contig1813:11016..11055Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1813 11017..11055 +
1622930045.1197894-UTR-H-elongata_contig1813:14447..147221622930045.1197894-UTR-H-elongata_contig1813:14447..14722Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1813 14448..14722 +
1691679259.491839-UTR-H-elongata_contig1813:14447..147221691679259.491839-UTR-H-elongata_contig1813:14447..14722Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1813 14448..14722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930045.0073538-CDS-H-elongata_contig1813:11055..112111622930045.0073538-CDS-H-elongata_contig1813:11055..11211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1813 11056..11211 +
1691679259.4289355-CDS-H-elongata_contig1813:11055..112111691679259.4289355-CDS-H-elongata_contig1813:11055..11211Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1813 11056..11211 +
1622930045.0244794-CDS-H-elongata_contig1813:11590..116861622930045.0244794-CDS-H-elongata_contig1813:11590..11686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1813 11591..11686 +
1691679259.4380043-CDS-H-elongata_contig1813:11590..116861691679259.4380043-CDS-H-elongata_contig1813:11590..11686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1813 11591..11686 +
1622930045.0433123-CDS-H-elongata_contig1813:12010..120911622930045.0433123-CDS-H-elongata_contig1813:12010..12091Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1813 12011..12091 +
1691679259.449659-CDS-H-elongata_contig1813:12010..120911691679259.449659-CDS-H-elongata_contig1813:12010..12091Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1813 12011..12091 +
1622930045.059558-CDS-H-elongata_contig1813:13289..134181622930045.059558-CDS-H-elongata_contig1813:13289..13418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1813 13290..13418 +
1691679259.4598868-CDS-H-elongata_contig1813:13289..134181691679259.4598868-CDS-H-elongata_contig1813:13289..13418Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1813 13290..13418 +
1622930045.0786011-CDS-H-elongata_contig1813:13844..139641622930045.0786011-CDS-H-elongata_contig1813:13844..13964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1813 13845..13964 +
1691679259.470213-CDS-H-elongata_contig1813:13844..139641691679259.470213-CDS-H-elongata_contig1813:13844..13964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1813 13845..13964 +
1622930045.1062255-CDS-H-elongata_contig1813:14417..144471622930045.1062255-CDS-H-elongata_contig1813:14417..14447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1813 14418..14447 +
1691679259.4801037-CDS-H-elongata_contig1813:14417..144471691679259.4801037-CDS-H-elongata_contig1813:14417..14447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1813 14418..14447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1813.4848.1

>prot_H-elongata_contig1813.4848.1 ID=prot_H-elongata_contig1813.4848.1|Name=mRNA_H-elongata_contig1813.4848.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=204bp
MTAPISLYYFNVPGRGEAIRIALVLGGIEFNDKHLTYQELSASKFKYVPV
LQINGTNYSQSTSLLRYVGTLVGLFPKDPLEALKVDEVVMTAEDLFIAIA
ATMVIKDPEKKLEARKAAAEGKIKEVLETLEAKKSTSPSSKFFFGESITI
ADLIIHAIVMSLECGELDGIPTTIVSDWAPSLKNIHIEVMENPKVKEWYS
SKN*
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mRNA from alignment at H-elongata_contig1813:11017..14722+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1813.4848.1 ID=mRNA_H-elongata_contig1813.4848.1|Name=mRNA_H-elongata_contig1813.4848.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3706bp|location=Sequence derived from alignment at H-elongata_contig1813:11017..14722+ (Himanthalia elongata Himel1 dioecious)
AGCGCATACAAAGAAAGCTCTTTCTTCCGCAGGATAACCATGACTGCACC GATCAGCCTCTACTACTTCAACGTCCCGGGGCGTGGCGAGGCCATCCGCA TCGCTCTAGTTCTAGGAGGCATCGAATTCAATGATAAACACCTTACGTAC CAGGAGTTGAGCGCCTCGAAGTTCAAGTACGTCCCGGTCTTGCAAGTGAG TCCGCTCCGCTATCTATGTAACGACGAAATATAAAACGACTACCGGTGCT TGATTAGTAGATGGTTAGGGCTGTGTAGCAATTGCAAGGATATTTCCCGG AGGTGGTTAAATGCTCTATCGACGATAATAATGCTGACGCTTTTCGCTCG CGATAGGGAGGAAGCGAATTCGAGTGTAGATGGTTTCGGCAAAGTTGGAA AACTCTGGCATACGTTCGGTGCGCCGTAATTTTCTTGCATGGAATCATTT GGGAGGATGTAGAGTGTTTTAGCCGTCACCTTACAGGCGAATATACCAGC ACAAAAGAGGCATATAGTGTTGGTATCGGTACCCTTACCTACCCCTACGC CCTGCGAATCGTATGTCGTATCAGATTAACGGCACCAACTACAGCCAATC CACGTCCTTGCTCCGGTACGTCGGGACGCTAGTAGGCCTCTTTCCTAAGG ATCCACTGGAAGCTCTAAAGGCGAGGCCGAGTGTCAGTACACAAATCTCT TCGTATATGGACACTATTTAGTCTTCTCTTGCCTCAGCTGGGGGGTAGTG TTAGGTAATATGTACTCTCCCTCGAATGAAACGACTTGCTGTATGTCGAT AAATAAATATATTTCAAGCCATTTACAGCACGGGAATCCAGCCGAGTCTC CCCTTGGAAATTCTTGCTGGCGGTGAACACCGCCGAACTCTGTAGCAATC TCTTGTGTCGGCGATGGATTTTAGTGTACCATACCGAATTTGGTCCGTAA AATATGATTTTATCCGCCTAAGTCTGCCAACGCCGGCCAATCAGGTGGAC GAGGTCGTGATGACAGCGGAGGACTTGTTCATCGCCATTGCTGCAACTAT GGTCATCAAGGACCCGGAAAAGAAGGCAGGCTTGCGCGCGCCCGGCATTT CCCCCCACCGCGTGTTTTCCTGGATATCTTTGAAAGCATTTCATTTACGC AGCGCCTGGGTTACTCATTTTAGAGACACAATGAGAACGACTACACCCTC CTCCATTTGTGTAAATAATGGGCTAATTGCTTCCCAGTCATGCGCGTTCA ACGGGAGAGAAATATTTTACGAAGGAGCAACCCCACTGTCTTGATACGCT CGAACCTACAGCTTGCTGGGGAGATATATTTAAGTGTATGTATTCCCTCG TGGTGCCGGGCTGGTGGCATCATTACCATCATCGTGGTTTATATAGCCTC CAATACCGTACTGTGTGATATCGCATGTCTATTGTATCAATAGTGAGTAT GGAAAAAAGAGAGGAGCACAAAACTTGGTCCGCCGTGGTGTTACCTGAAA AGGCATATGCCGGCGGATTCTTGGTGGTGAACGTCATCGGTATCCAATTG AGTGGCCTGATAAACTTCGGACTGACCGCATGGCGATTAACGGTAAAGAT AGATTCCACCCGCCGTAGACAGCGGGTGGATCGAGAGTGTCCTGGGAGTT CGCACCAGATTCAGCCTGGGTGGGAAGAATGAGCAGCAGACTGACGCGGG ACGGGATGGTCGAAACTGCCTCGCGAGACCAAACTCTCAGGCGCGAACGG GGACAGGGAAAACTCACGCTTCCTGTTCAATTGACCACGAGAAGGATTGA CAGCCATATCCGGTTGATCCATATCATACTGCTATATGTGATGACGCCAT TACCGCACATAGATGTCTATGTGCATACTTAGACACACACACACGTGTGA GTATTTTACCATTCAATGTAGACGAATTAACCGCAGTTAATTTTGCTTCC CTCCAAGGCCCTTGCGGGAAATTCAACACAAGCATCTCGTTGAGTAACAG CACGCCTAAGAGGTAGTCATACCGTCTGTAATCTTCCGTTTAAATAAAGG AATTGTGCCAAGCCTGGTTTGTTTCGATATCTCCCGTCTCCACGCTCGAG CTTGCCGTGAGAAGAGAAGGAATATATTTATTTTCTGCCGATCTGTTCCA CAACCAACCGCACTCTATTTCATATGTATGTGCACGGTATCCGCCTGCTG TCTCCATCTCCCACTAATCCTTCTGGTTGAACTGCTTGTGGATTTAACGG CTGCTGCTTTTGGGGTCTTTCAGCTCGAGGCACGCAAGGCAGCGGCGGAA GGGAAGATTAAGGAGGTACTGGAAACGCTGGAAGCGAAGAAATCGACATC GCCATCCTCTAAGTTCTTCTTTGGGGAGTCCATTACGATCGCCGACCTCA TCGTGAGAGAGGAAAATATGGCTTATCGCCCAACTCGCCCCCCCTCCGCC CGCCGTTCAGTATATTTGGTTTGGGAGTGTGGTTACGGGAGATCGCCCAG GGGGTATCCTACCTTCACAATATTTAAACCAAATGGATACCATCTCCAAT GAGGCGGCAGAGTTTATCAAACTTCAGATTATCCCGCGTAAGCGTAGCCT TCTTTCATCGCGATCGGGGGGGGGGGCAGAGTTTCACCAACAAACCCTAG AACTGGGGGCGCATCGATCGTCATCTGGAGCTATACATGAACATATATTC CGACTGCAGGTGGTCGGTGCTCCCAACTTCGTGTTTGTGCTTTTTTTAAC AAGCTCTTTTGACCTTCCTGGTATAATTACTTTTTCATCCTCTTACATTT CTGTGCCTCCGATCGCGATCTCGTTCAGATTCATGCCATAGTTATGTCGC TAGAGTGTGGTGAACTCGACGGAATTCCAACTACCATCGTCTCAGACTGG GCCCCTTCTCTCAAGAATATTCATATCGAAGTCATGGAGAATCCCAAGGT ATGACCCTCGCTCTTCATGCCTCGCTTCTCACACTGGTCAGCATTCTTCA TTACCGTATTTCTCCTCACAGGACCGCTACCAAGCTCGGCATCAAACATT TCCGTCCGATACCCGCTACCGTACCAGCGGCTCGTCGAGTTGATATTTTC ATCGATGGCAATTGAGACAGTAGATATAATGGACGCCCCGATAAACCATG TACCAGTTGCTTCGCCGAGCAATTGCCCCCCCCCCCCTCCCCCCGCATCG CTAAATTTCGACGAAGCCGAGATATGTTCTCGCTTTAATGATTCGTATCT CCTTCAGACGATTTAGCGCCATTAGACTCGCCGTTTCAGATGCGCGTATT CCAGTGCCTCAGCTATAGGGCAGCAGCTCAAGTTGAAATGTACTTCTTTC ATAACCCTCGACATTATCCCGACCACGTTTTTTTCTGCGTTTACTCCACA GGTCAAGGAGTGGTACTCTTCGAAGAACTAATTTCTTTGTAGGGAGAAAT TATCAATGCATGTAAAGCTTTTGAAAAGTGGTGGTTGCAAGAATAGCGTG CAAACAAGAGGGAACTACAAAGCGGACTATCTGTGGATATCGCTTACCGA TGTCATGTTGCCTTTTTCTGGCGTTTCGTTTTTTCTTTGTCGTGTTTTTC TTGTTTTTCTTTTTTTTCGTTGCTCTCATTGAACCCGTCGCTCTTCGCTC AATCGTTCTACGATAGGCCCGCGTCCCGATAGCCACATGCAGTTCGTTAA GACCTC
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Coding sequence (CDS) from alignment at H-elongata_contig1813:11017..14722+

>mRNA_H-elongata_contig1813.4848.1 ID=mRNA_H-elongata_contig1813.4848.1|Name=mRNA_H-elongata_contig1813.4848.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1224bp|location=Sequence derived from alignment at H-elongata_contig1813:11017..14722+ (Himanthalia elongata Himel1 dioecious)
ATGACTGCACCGATCAGCCTCTACTACTTCAACGTCCCGGGGCGTGGCGA
GGCCATCCGCATCGCTCTAGTTCTAGGAGGCATCGAATTCAATGATAAAC
ACCTTACGTACCAGGAGTTGAGCGCCTCGAAGTTCAAGTACGTCCCGGTC
TTGCAAATGACTGCACCGATCAGCCTCTACTACTTCAACGTCCCGGGGCG
TGGCGAGGCCATCCGCATCGCTCTAGTTCTAGGAGGCATCGAATTCAATG
ATAAACACCTTACGTACCAGGAGTTGAGCGCCTCGAAGTTCAAGTACGTC
CCGGTCTTGCAAATTAACGGCACCAACTACAGCCAATCCACGTCCTTGCT
CCGGTACGTCGGGACGCTAGTAGGCCTCTTTCCTAAGGATCCACTGGAAG
CTCTAAAGATTAACGGCACCAACTACAGCCAATCCACGTCCTTGCTCCGG
TACGTCGGGACGCTAGTAGGCCTCTTTCCTAAGGATCCACTGGAAGCTCT
AAAGGTGGACGAGGTCGTGATGACAGCGGAGGACTTGTTCATCGCCATTG
CTGCAACTATGGTCATCAAGGACCCGGAAAAGAAGGTGGACGAGGTCGTG
ATGACAGCGGAGGACTTGTTCATCGCCATTGCTGCAACTATGGTCATCAA
GGACCCGGAAAAGAAGCTCGAGGCACGCAAGGCAGCGGCGGAAGGGAAGA
TTAAGGAGGTACTGGAAACGCTGGAAGCGAAGAAATCGACATCGCCATCC
TCTAAGTTCTTCTTTGGGGAGTCCATTACGATCGCCGACCTCATCCTCGA
GGCACGCAAGGCAGCGGCGGAAGGGAAGATTAAGGAGGTACTGGAAACGC
TGGAAGCGAAGAAATCGACATCGCCATCCTCTAAGTTCTTCTTTGGGGAG
TCCATTACGATCGCCGACCTCATCATTCATGCCATAGTTATGTCGCTAGA
GTGTGGTGAACTCGACGGAATTCCAACTACCATCGTCTCAGACTGGGCCC
CTTCTCTCAAGAATATTCATATCGAAGTCATGGAGAATCCCAAGATTCAT
GCCATAGTTATGTCGCTAGAGTGTGGTGAACTCGACGGAATTCCAACTAC
CATCGTCTCAGACTGGGCCCCTTCTCTCAAGAATATTCATATCGAAGTCA
TGGAGAATCCCAAGGTCAAGGAGTGGTACTCTTCGAAGAACTAAGTCAAG
GAGTGGTACTCTTCGAAGAACTAA
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