mRNA_H-elongata_contig18111.4838.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig18111.4838.1 vs. uniprot
Match: A0A6H5LD91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD91_9PHAE) HSP 1 Score: 145 bits (367), Expect = 2.630e-36 Identity = 80/138 (57.97%), Postives = 93/138 (67.39%), Query Frame = 1
Query: 1897 QTVDKYWKEYSKQRAARIHSPDFHNKRKCNSGQKGIDITHLLDKLKRIPLKNRTALRSIAAALDIPTTMLFYNLKKLGLRSCSRFLKPLLTDGSKAARLRWALRWVRDAAGGAHKCEGVDADLPAELSVAAAVEARPS 2310
+TV KYWK Y++++ A PD HNKRK NSGQKG+DI L + L+ I LKNRT +RSIAAAL IP + LF NL LGLRSCSRFLKPLL+D KA RL WALRWVR +AG AH G A P L RP+
Sbjct: 31 KTVSKYWKLYNQKKEAGEEDPDLHNKRKGNSGQKGLDIATLKEALQDIHLKNRTTIRSIAAALGIPKSTLFDNLNNLGLRSCSRFLKPLLSDDWKAQRLAWALRWVRSSAGDAHLVGGNPARNPPALYAGVGSVPRPA 168
BLAST of mRNA_H-elongata_contig18111.4838.1 vs. uniprot
Match: A0A6H5KWV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWV2_9PHAE) HSP 1 Score: 117 bits (292), Expect = 2.420e-23 Identity = 53/71 (74.65%), Postives = 61/71 (85.92%), Query Frame = -1
Query: 2239 DFVHLDEKWFYICKYGQRYYIYEGEDFHERKIQLKSHIMKVMFLAAVARPRFDSSRN*KFGGKIGIYAFTL 2451
DF+HLDEKWFYICK GQRYY YEGE RK+Q KSH++KVMFLAAVARPR+DSSR+ +F GKIGIY FT+
Sbjct: 56 DFLHLDEKWFYICKQGQRYYFYEGEHLPIRKVQHKSHVIKVMFLAAVARPRYDSSRSRQFDGKIGIYPFTV 126
BLAST of mRNA_H-elongata_contig18111.4838.1 vs. uniprot
Match: A0A024UI08_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UI08_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 4.040e-17 Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = -1
Query: 2236 TIHTQTHTDFVHLDEKWFYICKYGQRYYIYEGEDFHERKIQLKSHIMKVMFLAAVARPRFDSSRN*KFGGKIGIYAFTLV 2475
T+H D VH+DEKWFYI K +RYY++ E RK Q K H+MKVMFL AVARPRFD+ R + GKIG + FT+V
Sbjct: 25 TVHWHDMLDTVHIDEKWFYISKVNRRYYLWNDEPVPMRKCQSKRHLMKVMFLTAVARPRFDAHRRKSWDGKIGTWPFTMV 104
BLAST of mRNA_H-elongata_contig18111.4838.1 vs. uniprot
Match: A0A6A4ZN37_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZN37_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 2.750e-16 Identity = 43/80 (53.75%), Postives = 58/80 (72.50%), Query Frame = -1
Query: 2242 NITIHTQTHTDFVHLDEKWFYICKYGQRYYIYEGEDFHERKIQLKSHIMKVMFLAAVARPRFDSSRN*KFGGKIGIYAFT 2481
N T++ D+VH+DEKWFY+ K +RYY++ ED RK Q K+HI+KVMFL AVARPR+DS++ + GKIG +AFT
Sbjct: 137 NGTLYLHDMLDYVHIDEKWFYMTKVNRRYYLWSDEDVPARKCQSKNHIIKVMFLTAVARPRYDSTKRTHWDGKIGSWAFT 216
BLAST of mRNA_H-elongata_contig18111.4838.1 vs. uniprot
Match: A0A6H5L9I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9I0_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 3.010e-16 Identity = 46/101 (45.54%), Postives = 62/101 (61.39%), Query Frame = 1
Query: 1891 HIQTVDKYWKEYSKQRAARIHSPDFHNKRKCNSGQKGIDITHLLDKLKRIPLKNRTALRSIAAALDIPTTMLFYNLKKLGLRSCSRFLKPLLTDGSKAARL 2193
H +T + W+ Y Q A + SP N+R NSG+KG+ I L ++L+ IPL +RT R +AAAL+IP T L NLK LGLR+ S +KP LTD +L
Sbjct: 52 HWETNKRLWRRYDTQHKAGVSSPQLANRRNGNSGRKGVPIEELRERLRDIPLNDRTTQRRLAAALEIPLTTLHKNLKALGLRAHSNAIKPYLTDAENTYKL 152
BLAST of mRNA_H-elongata_contig18111.4838.1 vs. uniprot
Match: W4FF05_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FF05_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 4.980e-16 Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = -1
Query: 2242 NITIHTQTHTDFVHLDEKWFYICKYGQRYYIYEGEDFHERKIQLKSHIMKVMFLAAVARPRFDSSRN*KFGGKIGIYAFT 2481
N T++ D+VH DEKWFY+ K ++YY++ ED RK Q K+HI+KVMFL AVARPR+DS++ + GKIG +AFT
Sbjct: 134 NGTLYWHDMLDYVHKDEKWFYMTKVNRQYYLWSDEDVPARKCQSKNHIIKVMFLTAVARPRYDSTKRTHWDGKIGTWAFT 213
BLAST of mRNA_H-elongata_contig18111.4838.1 vs. uniprot
Match: UPI001036A328 (uncharacterized protein LOC114262392 n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI001036A328) HSP 1 Score: 87.4 bits (215), Expect = 9.800e-16 Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = -1
Query: 2242 DFVHLDEKWFYICKYGQRYYIYEGEDFHERKIQLKSHIMKVMFLAAVARPRFDSSRN*KFGGKIGIYAFT 2451
D+VH+DEKWFYI K +RYY+ E+ R + K I KVMFLAAVARPRFD ++N +F GKIGI+ FT
Sbjct: 18 DYVHIDEKWFYISKEAERYYLLPEEEEPHRCCKSKRFITKVMFLAAVARPRFDENKNEEFSGKIGIWPFT 87
BLAST of mRNA_H-elongata_contig18111.4838.1 vs. uniprot
Match: UPI000CD9D6ED (uncharacterized protein LOC111880928 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD9D6ED) HSP 1 Score: 87.0 bits (214), Expect = 1.430e-15 Identity = 42/70 (60.00%), Postives = 49/70 (70.00%), Query Frame = -1
Query: 2236 VHLDEKWFYICKYGQRYYIYEGEDFHERKIQLKSHIMKVMFLAAVARPRFDSSRN*KFGGKIGIYAFTLV 2445
VH+DEKWFY+ K +RYY GED R + K I K+MFLAAVARPR+DSS N F GKIGIY FT +
Sbjct: 95 VHIDEKWFYMSKPSKRYYFVPGEDEPLRTCKSKKFITKIMFLAAVARPRYDSSGNEVFSGKIGIYPFTTL 164
BLAST of mRNA_H-elongata_contig18111.4838.1 vs. uniprot
Match: W4GU55_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GU55_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 1.780e-15 Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = -1
Query: 2236 DFVHLDEKWFYICKYGQRYYIYEGEDFHERKIQLKSHIMKVMFLAAVARPRFDSSRN*KFGGKIGIYAFTLV 2451
++VH+DEKWFY+ K +RYY+Y+ E+ R ++ K I KVMFLAAVARPRFD F GKIG++ F V
Sbjct: 3 NYVHVDEKWFYLTKVNRRYYVYDDEEVAARTVKSKHFITKVMFLAAVARPRFDPHTRRVFDGKIGVWPFVEV 74
BLAST of mRNA_H-elongata_contig18111.4838.1 vs. uniprot
Match: A0A6H5KBK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK8_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 1.850e-15 Identity = 49/95 (51.58%), Postives = 59/95 (62.11%), Query Frame = 1
Query: 1909 KYWKEYSKQRAARIHSPDFHNKRKCNSGQKGIDITHLLDKLKRIPLKNRTALRSIAAALDIPTTMLFYNLKKLGLRSCSRFLKPLLTDGSKAARL 2193
+ W Y QR A + P N RK NSG+KGI I L ++L+ IPL +RT R +AAAL I TT LF NLK LGLR+ S+ LKPLLT K L
Sbjct: 19 RLWVRYEAQRKAGVARPKIGNLRKGNSGRKGIPIQELRERLRDIPLNDRTTQRRLAAALGIATTTLFDNLKALGLRAHSKALKPLLTGDGKLPHL 113 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18111.4838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18111.4838.1 >prot_H-elongata_contig18111.4838.1 ID=prot_H-elongata_contig18111.4838.1|Name=mRNA_H-elongata_contig18111.4838.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=325bp MQDRADAISDVLAFCPSETFLFLAGVSKTWKRAWLAAGYSKRTGVREAAAback to top mRNA from alignment at H-elongata_contig18111:1975..5070+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18111.4838.1 ID=mRNA_H-elongata_contig18111.4838.1|Name=mRNA_H-elongata_contig18111.4838.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3096bp|location=Sequence derived from alignment at H-elongata_contig18111:1975..5070+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18111:1975..5070+ >mRNA_H-elongata_contig18111.4838.1 ID=mRNA_H-elongata_contig18111.4838.1|Name=mRNA_H-elongata_contig18111.4838.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1950bp|location=Sequence derived from alignment at H-elongata_contig18111:1975..5070+ (Himanthalia elongata Himel1 dioecious)back to top |