mRNA_H-elongata_contig180633.4811.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig180633.4811.1 vs. uniprot
Match: UPI001CF4D73B (uncharacterized protein LOC122958583 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF4D73B) HSP 1 Score: 66.2 bits (160), Expect = 7.010e-11 Identity = 33/80 (41.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query: 1 MLSYLEVLLRADCECIEVAVMKRVLHYAGHVARMHDDRLSKIVMRGEMVGGKRKRGQPAKRLEHRVTEYCIAFGIDPKCW 240
+++ +EVL +A+ IE ++K L +AGHV+R+ D RL KIVM GE+ G R RG P KR + ++ + A ID + W
Sbjct: 428 LITNVEVLEQAEVSSIEAMILKYQLRWAGHVSRLEDHRLPKIVMFGELSSGHRDRGVPTKRFKDKLKKSLTACNIDHRQW 507
BLAST of mRNA_H-elongata_contig180633.4811.1 vs. uniprot
Match: A0A8K0EG69_BRALA (Hypp8672 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0EG69_BRALA) HSP 1 Score: 62.0 bits (149), Expect = 2.220e-9 Identity = 33/75 (44.00%), Postives = 43/75 (57.33%), Query Frame = 1
Query: 16 EVLLRADCECIEVAVMKRVLHYAGHVARMHDDRLSKIVMRGEMVGGKRKRGQPAKRLEHRVTEYCIAFGIDPKCW 240
EVL RA+ IE +MK L +AGHV+RM D RL KI++ GE+ G R RG P KR + + + ID W
Sbjct: 947 EVLERAEITSIEAMLMKTQLRWAGHVSRMEDHRLPKIILYGELSTGHRNRGAPKKRFKDTLKKSLQCCNIDYHQW 1021
BLAST of mRNA_H-elongata_contig180633.4811.1 vs. uniprot
Match: UPI0016045646 (uncharacterized protein LOC118413616 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016045646) HSP 1 Score: 61.2 bits (147), Expect = 3.740e-9 Identity = 33/79 (41.77%), Postives = 47/79 (59.49%), Query Frame = 1
Query: 4 LSYLEVLLRADCECIEVAVMKRVLHYAGHVARMHDDRLSKIVMRGEMVGGKRKRGQPAKRLEHRVTEYCIAFGIDPKCW 240
++ +EVL +A+ IE +MK L +AGHV+RM D RL KIV+ GE+ G R RG P KR + + + + ID W
Sbjct: 200 ITNVEVLEQAEIPSIEATLMKTQLRWAGHVSRMEDHRLPKIVLYGELSTGYRHRGAPKKRFKDSLKKSLASCHIDLHQW 278
BLAST of mRNA_H-elongata_contig180633.4811.1 vs. uniprot
Match: A0A8C5PP25_9ANUR (Reverse transcriptase domain-containing protein n=10 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PP25_9ANUR) HSP 1 Score: 60.1 bits (144), Expect = 1.050e-8 Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query: 16 EVLLRADCECIEVAVMKRVLHYAGHVARMHDDRLSKIVMRGEMVGGKRKRGQPAKRLEHRVTEYCIAFGIDPKCW 240
EVL+RAD I + + L +AGHVARM D+RL K+++ GE+ GKR +G KR + + AF I+P W
Sbjct: 816 EVLVRADLPSIFTILAQSQLRWAGHVARMKDNRLPKMLLFGELTQGKRSQGGQKKRYKDTLKAALKAFNINPINW 890
BLAST of mRNA_H-elongata_contig180633.4811.1 vs. uniprot
Match: A0A6S7JBE9_PARCT (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JBE9_PARCT) HSP 1 Score: 58.5 bits (140), Expect = 3.540e-8 Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 1
Query: 16 EVLLRADCECIEVAVMKRVLHYAGHVARMHDDRLSKIVMRGEMVGGKRKRGQPAKRLEH 192
EVL RA C IE + KR L +AGH+ RM D+RL KI++ GE+ G R G+P KR H
Sbjct: 294 EVLERAKCCSIESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRTSH 352
BLAST of mRNA_H-elongata_contig180633.4811.1 vs. uniprot
Match: A0A6S7JKI9_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JKI9_PARCT) HSP 1 Score: 58.2 bits (139), Expect = 4.210e-8 Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query: 16 EVLLRADCECIEVAVMKRVLHYAGHVARMHDDRLSKIVMRGEMVGGKRKRGQPAKRLEHRVTEYCIAFGIDPKCW 240
EVL RA C +E + KR L +AGH+ RM D+RL KI++ GE+ G R G+P KR + + + + + + W
Sbjct: 211 EVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSW 285
BLAST of mRNA_H-elongata_contig180633.4811.1 vs. uniprot
Match: A0A6S7K883_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K883_PARCT) HSP 1 Score: 58.2 bits (139), Expect = 4.820e-8 Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query: 16 EVLLRADCECIEVAVMKRVLHYAGHVARMHDDRLSKIVMRGEMVGGKRKRGQPAKRLEHRVTEYCIAFGIDPKCW 240
EVL RA C +E + KR L +AGH+ RM D+RL KI++ GE+ G R G+P KR + + + + + + W
Sbjct: 278 EVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSW 352
BLAST of mRNA_H-elongata_contig180633.4811.1 vs. uniprot
Match: A0A7D9M5G6_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M5G6_PARCT) HSP 1 Score: 58.2 bits (139), Expect = 4.980e-8 Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query: 16 EVLLRADCECIEVAVMKRVLHYAGHVARMHDDRLSKIVMRGEMVGGKRKRGQPAKRLEHRVTEYCIAFGIDPKCW 240
EVL RA C +E + KR L +AGH+ RM D+RL KI++ GE+ G R G+P KR + + + + + + W
Sbjct: 564 EVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSW 638
BLAST of mRNA_H-elongata_contig180633.4811.1 vs. uniprot
Match: UPI0013901FBB (uncharacterized protein K02A2.6-like n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013901FBB) HSP 1 Score: 58.2 bits (139), Expect = 5.050e-8 Identity = 32/75 (42.67%), Postives = 42/75 (56.00%), Query Frame = 1
Query: 16 EVLLRADCECIEVAVMKRVLHYAGHVARMHDDRLSKIVMRGEMVGGKRKRGQPAKRLEHRVTEYCIAFGIDPKCW 240
EVL RA CI + + L +AGHVARM D+RL K ++ GE+ GKR +G KR + + AF ID W
Sbjct: 27 EVLARAGLPCIHTILKQSQLRWAGHVARMPDERLPKKLLFGELQHGKRCKGGQKKRFKDTLKLSLKAFNIDHTSW 101
BLAST of mRNA_H-elongata_contig180633.4811.1 vs. uniprot
Match: K7EZV3_PELSI (Reverse transcriptase domain-containing protein n=1 Tax=Pelodiscus sinensis TaxID=13735 RepID=K7EZV3_PELSI) HSP 1 Score: 57.0 bits (136), Expect = 1.000e-7 Identity = 32/75 (42.67%), Postives = 43/75 (57.33%), Query Frame = 1
Query: 16 EVLLRADCECIEVAVMKRVLHYAGHVARMHDDRLSKIVMRGEMVGGKRKRGQPAKRLEHRVTEYCIAFGIDPKCW 240
EVL A+ IE V+K L +AGH+ARM + RL KIV+ GE+ G R G P KR + + + A ID + W
Sbjct: 176 EVLELAEVTSIEAMVLKIQLRWAGHIARMENHRLPKIVLYGELSSGYRDIGAPRKRYKDSLKKSLTACCIDHRQW 250 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig180633.4811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig180633.4811.1 >prot_H-elongata_contig180633.4811.1 ID=prot_H-elongata_contig180633.4811.1|Name=mRNA_H-elongata_contig180633.4811.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp MLSYLEVLLRADCECIEVAVMKRVLHYAGHVARMHDDRLSKIVMRGEMVGback to top mRNA from alignment at H-elongata_contig180633:748..987- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig180633.4811.1 ID=mRNA_H-elongata_contig180633.4811.1|Name=mRNA_H-elongata_contig180633.4811.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at H-elongata_contig180633:748..987- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig180633:748..987- >mRNA_H-elongata_contig180633.4811.1 ID=mRNA_H-elongata_contig180633.4811.1|Name=mRNA_H-elongata_contig180633.4811.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig180633:748..987- (Himanthalia elongata Himel1 dioecious)back to top |