mRNA_H-elongata_contig18045.4804.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18045.4804.1
Unique NamemRNA_H-elongata_contig18045.4804.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig18045.4804.1 vs. uniprot
Match: D7FHM1_ECTSI (TiTiN family member (Ttn-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM1_ECTSI)

HSP 1 Score: 332 bits (850), Expect = 4.690e-90
Identity = 270/591 (45.69%), Postives = 322/591 (54.48%), Query Frame = 1 
Query: 2230 RTEKSLATERKRFADYKRMTEEKLKLLRREATRVSEVEDELATKTLRLKQKNAEARALATDRTVVKDLRESLSSKDNALNELRQELNSLRQISTTTASKQRSPRLQKXXXXXXXXXXXXXXXXXXPSNFNASPT-----------------LDLTRTFSLSSMGSLGDVG--SGLDAIV--------------------------------------EEAEARESSSEEGDAGVDDSAAPSP----SGSDAGGEGVSPGAGVAELPASPPRLKLDLVHFDDDLDEDDEDQKSNNHDVFAGKFSAAD----KEASLVGRWNSVVGSRAT-ARPAKASVSLSPTRRLGTKSRASEAPG---------------SRSLSPLPCR---PSRASWCIGGLSQSHAQLKM---PAANCLSSTLTSTRKLDPVDHGLGRQGNAVVLELGAWRVRVGVVANAEGGGLGVKSFFDDFPCCMARPMREGADLDELVNGASSLAAPMYAKFRETGVFVGGDAWYCCLDHPSIALRSKLQLSCPMQR-GRKLNREDTNMLMDHAFRLLNQDPACAPTLLTYKPTATADEVLDMVSVLLEAHQV 3738
            R E SLA ER++F+  KR +E K+KLLR  A R  ++ED+L+ K+LRLKQK AEAR LATD  VV+ LRESL+ KDNALNELRQEL +LR  S    +         XXXXXXX                 S +                  D+TRTFSLSS   +   G  SGL AIV                                      +E +  ES SE G + VD           +G  +  +G   GAG A L  SP   +LD            ED+ S +  V A   +AA      E   VG      G R+T AR    S+S  P  R    +RAS APG               ++SLSPLP R    SRASW  G     HA  ++   P  +CLS  +    +L P DHGLGR+GN VVLELGAWRVR GVV  +   G    S+FDDFPCC+ARP REGADLDELVNGASSLAAPMY+KFR+TGVFVGGDAWYCCLDHPSIALRSKL+LSCPM+R  +  +REDT  L DHA+ LL QD + +PTLLTYKPTAT DEVL + SVLLE H+V
Sbjct:  838 RAEASLAAERQKFSAAKRASEAKIKLLRAAAGRADDLEDQLSAKSLRLKQKEAEARVLATDGKVVRGLRESLTCKDNALNELRQELGNLRVASAAAEAXXXXXXXXXXXXXXXXLYGNVGSSERRSIGMPGSASRXXXXXXXXXXXXXXXXXDMTRTFSLSSEEEIDSSGESSGLGAIVXXXXXXXXXXXXXXXXXXXXXGEEGGGVAGYGGKMSVVQEGD-EESESEGGRSSVDGEQXXXXXXVXNGELSADDGKDAGAGAARLSLSPLAPRLDYS----------EDRPSADPPVSATYAAAAAMFDRNEDQKVGVHR---GGRSTSARRLSMSLSPPPGARRSRGARASVAPGXXXXXXXXXXXXXGCAKSLSPLPLRGGKKSRASWSPGAGLLPHAAARLAQSPPLSCLSPMV----RLAPADHGLGREGNTVVLELGAWRVRAGVVTPSGEEGKS-SSYFDDFPCCVARPSREGADLDELVNGASSLAAPMYSKFRDTGVFVGGDAWYCCLDHPSIALRSKLRLSCPMRRRDQPPSREDTERLADHAYGLLKQDSSLSPTLLTYKPTATVDEVLALASVLLEVHRV 1409
[Close]
BLAST of mRNA_H-elongata_contig18045.4804.1 vs. uniprot
Match: A0A6H5JDL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL2_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 1.840e-42
Identity = 111/218 (50.92%), Postives = 128/218 (58.72%), Query Frame = 1 
Query: 3103 RSLSPLPCR---PSRASWCIGGLSQSHAQLKM---PAANCLSSTLTSTRKLDPVDHGLGRQGNAVVLELGAWRVRVGVVANAEGGGLGVKSFFDDFPCCMARPMREGADLDELVNGASSLAAPMYAKFRETGVFVGGDAWYCCLDHPSIALRSKLQLSCPMQRGRKLNREDTNMLMDHAFRLLNQDPACAPTLLTYKPTATADEVLDMVSVLLEAHQV 3738
            +SLSPLP R    SRASW  G     HA  ++   P  +CLS  +    +L P DHGLGR+GN VVLELGAWRVR GVV  +   G    S+FDDFPCC+ARP +EGADL ELVNGASSLAAPMY+KFRE                                       EDT  L DHA+ LL QD + +PTLLTYKPTAT DEVL + SVLLE H+V
Sbjct:  611 KSLSPLPLRGGKKSRASWSPGAGLLPHAAARLAQSPPLSCLSPMV----RLAPADHGLGREGNTVVLELGAWRVRAGVVTPSGEEGKS-SSYFDDFPCCVARPSKEGADLGELVNGASSLAAPMYSKFRE---------------------------------------EDTVRLADHAYGLLKQDSSLSPTLLTYKPTATVDEVLALASVLLEVHRV 784
[Close]
BLAST of mRNA_H-elongata_contig18045.4804.1 vs. uniprot
Match: W7TNT9_9STRA (Actin-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNT9_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.160e-21
Identity = 61/149 (40.94%), Postives = 81/149 (54.36%), Query Frame = 1 
Query: 3283 LELGAWRVRVGVVANAEGGGLGVKSFFD-DFPCCMARPMREGADLDELVNGASSLAAPMYAKFRETGVFVGGDAWYCCLDHPSIALRSKLQLSCPMQRGRKLNREDTNMLMDHAFRLLNQDPACAPTLLTYKPTATADEVLDMVSVLLE 3726
            +E+G WR+R G V          KSF   +FPC +ARP +  ADL  +V  AS  A  MY +FRE GVF+G DAWYC  DHP   LR  L+L  P  R R +   D  +L+ + F          P ++TYKPT+T  E  ++V +L E
Sbjct:  893 VEIGTWRIRAGWVEVGTS-----KSFQTVEFPCIIARPSKASADLTTIVQHASIKADAMYGRFREMGVFIGKDAWYCAFDHPDPVLRGSLKLEAPFDRDRLIRPADLKLLLKYVFEKCEVCLTKTPLVVTYKPTSTLKEREEVVEMLFE 1036
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18045.4804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FHM1_ECTSI4.690e-9045.69TiTiN family member (Ttn-1) n=1 Tax=Ectocarpus sil... [more]
A0A6H5JDL2_9PHAE1.840e-4250.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TNT9_9STRA1.160e-2140.94Actin-like protein n=2 Tax=Monodopsidaceae TaxID=4... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18045contigH-elongata_contig18045:2373..7205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score343.6
Seed ortholog evalue3.9e-91
Seed eggNOG ortholog2880.D7FHM1
KEGG koko:K10798,ko:K11767
KEGG Pathwayko03410,ko04210,ko04212,ko04214,ko04217,map03410,map04210,map04212,map04214,map04217
KEGG ModuleM00296
EggNOG free text desc.cytoskeleton organization
EggNOG OGsCOG5277@1,KOG0676@2759
EC2.4.2.30
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03032,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Exons5
Model size3738
Cds size3738
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18045.4804.1prot_H-elongata_contig18045.4804.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18045 2373..7205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930041.0349507-CDS-H-elongata_contig18045:2372..34861622930041.0349507-CDS-H-elongata_contig18045:2372..3486Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18045 2373..3486 +
1691679257.8857079-CDS-H-elongata_contig18045:2372..34861691679257.8857079-CDS-H-elongata_contig18045:2372..3486Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18045 2373..3486 +
1622930041.0507796-CDS-H-elongata_contig18045:3846..47111622930041.0507796-CDS-H-elongata_contig18045:3846..4711Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18045 3847..4711 +
1691679257.8978286-CDS-H-elongata_contig18045:3846..47111691679257.8978286-CDS-H-elongata_contig18045:3846..4711Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18045 3847..4711 +
1622930041.0661888-CDS-H-elongata_contig18045:5035..55101622930041.0661888-CDS-H-elongata_contig18045:5035..5510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18045 5036..5510 +
1691679257.909729-CDS-H-elongata_contig18045:5035..55101691679257.909729-CDS-H-elongata_contig18045:5035..5510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18045 5036..5510 +
1622930041.0802083-CDS-H-elongata_contig18045:5681..67001622930041.0802083-CDS-H-elongata_contig18045:5681..6700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18045 5682..6700 +
1691679257.9223375-CDS-H-elongata_contig18045:5681..67001691679257.9223375-CDS-H-elongata_contig18045:5681..6700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18045 5682..6700 +
1622930041.09697-CDS-H-elongata_contig18045:6940..72051622930041.09697-CDS-H-elongata_contig18045:6940..7205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18045 6941..7205 +
1691679257.9314716-CDS-H-elongata_contig18045:6940..72051691679257.9314716-CDS-H-elongata_contig18045:6940..7205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18045 6941..7205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18045.4804.1

>prot_H-elongata_contig18045.4804.1 ID=prot_H-elongata_contig18045.4804.1|Name=mRNA_H-elongata_contig18045.4804.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1246bp
SDTANIAAKAEASLAQLNNDFRSFRESISQDRRALQEAKEELAEIHERFV
VFQRDAEASAARKDAEFSAASAETECTLEQAREELRVFRLKTGGDVDVLR
EYEEALSKEREYVTSFKREAEDARQKLEEERRARESAKADLVDACKALEM
TKDSLSLNHERCVKSTRDNEAARDMLKESQAAKERIEADLAKAHEEIRIS
NEKNENRAEELRKSLEALAAQRERSATLLQEVDAALKLQEATQAARDRAE
ADLAETRDGLQESREALAAERERSEALSQKSDAMDEHAKTARAALEESHM
LRQALASERVLSAALGLEADATRKLQEDAQITKDSAITEITEIRNVLRET
RESLAVERQQSAASKRENEEVPAKGHLEEQLLESQRALVSERERYEAFNP
KDDDRDKHLEATREALDAERKRSVASMQEKEEAQKQKGDTQAAKGRVEEQ
LLESQQALASERERYEVLSQQADAWDKHLKATREALNAERKRSVASMQEK
EEAQKQKGHAQSAKDRVEENLLESQRALASERERYEALSQQADAWDKNLE
ATREALAAERERSAALVQEKEEAQKQEVEVQAAKRRAEADLAQTRDDLQE
AFDALAAERERSAASKQEEEEARKHRENAQSAKDRAETDLSEIGRDLQES
RDALSALREHAQATRDRKEADMVKIRDDLFKSQGALATERDCREAFKQKS
DALNNDLERARAAQEDIQAALEKGRKELGVLRGELKGVREAQTRTEKSLA
TERKRFADYKRMTEEKLKLLRREATRVSEVEDELATKTLRLKQKNAEARA
LATDRTVVKDLRESLSSKDNALNELRQELNSLRQISTTTASKQRSPRLQK
QQQQQDYRATASAASAASPSNFNASPTLDLTRTFSLSSMGSLGDVGSGLD
AIVEEAEARESSSEEGDAGVDDSAAPSPSGSDAGGEGVSPGAGVAELPAS
PPRLKLDLVHFDDDLDEDDEDQKSNNHDVFAGKFSAADKEASLVGRWNSV
VGSRATARPAKASVSLSPTRRLGTKSRASEAPGSRSLSPLPCRPSRASWC
IGGLSQSHAQLKMPAANCLSSTLTSTRKLDPVDHGLGRQGNAVVLELGAW
RVRVGVVANAEGGGLGVKSFFDDFPCCMARPMREGADLDELVNGASSLAA
PMYAKFRETGVFVGGDAWYCCLDHPSIALRSKLQLSCPMQRGRKLNREDT
NMLMDHAFRLLNQDPACAPTLLTYKPTATADEVLDMVSVLLEAHQV
back to top

mRNA from alignment at H-elongata_contig18045:2373..7205+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18045.4804.1 ID=mRNA_H-elongata_contig18045.4804.1|Name=mRNA_H-elongata_contig18045.4804.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4833bp|location=Sequence derived from alignment at H-elongata_contig18045:2373..7205+ (Himanthalia elongata Himel1 dioecious)
TCAGACACGGCAAACATAGCGGCGAAAGCGGAAGCCTCGTTGGCTCAGCT
AAACAATGACTTCCGCTCGTTTCGGGAGAGCATATCTCAGGATAGACGGG
CTTTGCAGGAGGCAAAGGAAGAGCTGGCCGAGATTCATGAGCGCTTCGTG
GTTTTCCAGCGAGACGCCGAAGCAAGCGCCGCTCGGAAGGATGCTGAGTT
CAGCGCTGCCTCGGCAGAAACGGAATGTACGCTAGAACAAGCGCGAGAGG
AGTTGAGGGTTTTCCGACTCAAGACTGGCGGTGACGTTGACGTACTCCGC
GAATACGAAGAGGCGTTGTCCAAAGAGCGAGAATACGTGACATCGTTCAA
GAGAGAGGCGGAGGACGCCCGCCAGAAGCTGGAGGAAGAGCGGAGGGCCA
GAGAGAGCGCGAAGGCCGATCTCGTCGACGCTTGCAAGGCGCTGGAGATG
ACAAAGGACTCTCTTTCATTGAACCACGAGCGGTGTGTAAAGTCTACGCG
GGACAACGAGGCAGCTCGTGATATGCTGAAGGAATCACAGGCAGCGAAGG
AGAGGATTGAAGCCGACCTCGCCAAGGCTCACGAAGAAATCCGCATTTCC
AACGAAAAAAACGAAAACAGGGCGGAAGAGCTCCGCAAGTCCCTCGAGGC
TCTGGCCGCTCAGCGAGAGCGGTCGGCCACGTTGCTGCAAGAAGTTGACG
CAGCCCTTAAGCTCCAGGAGGCTACACAAGCCGCCAGGGACCGCGCGGAA
GCTGATCTCGCCGAAACTCGCGATGGTTTGCAGGAGTCCCGCGAAGCTCT
GGCGGCCGAGCGCGAGCGATCTGAGGCACTAAGCCAGAAATCCGATGCGA
TGGACGAGCATGCCAAGACAGCACGCGCGGCGCTGGAAGAGTCCCATATG
TTGCGACAAGCTCTTGCCTCCGAGCGCGTACTGTCAGCCGCATTGGGTTT
GGAAGCGGACGCAACCCGTAAGCTCCAAGAGGATGCGCAAATCACCAAAG
ATAGCGCGATAACCGAAATCACCGAAATTCGCAATGTCTTGCGGGAAACC
CGTGAATCTCTGGCCGTCGAGCGCCAGCAATCGGCAGCGTCGAAGCGGGA
AAATGAAGAAGTGCGTAAGGAGCAGGAAAGCGCGGAGGCGAATCTCATCA
TAATTCGCAATGTCTTACAGGAGTCCCAGCGGGCCCTTGCCGCCGAGCGC
CAGCGCTCCGAAGCATTGAACGAGAAGGCCGAGGAGTCGAACAAACATAT
CGATACAGCTAACATGGCGCAAAAGAAGCTTCAGGAGTCCCGCGATGCTC
TGTTCGCTCAAAGTGAGCTGTCAGCCGCGTCGAAGCAAAAAGCGGAAGCC
GATCTGGAAGAAATTCGCCAAGACCTGCGGATGTGCCAGCTTAACCTTGC
TGCTGGGCGCGAGCAAATAACCACATTGATTCAGGAAGCAGGAGAAGCCC
GCAAGCAGAAGGGGGACGCCCAAGCCGCTAAAGGCCACCTAGAAGAACAA
CTACTGGAGTCTCAGCGAGCCCTTGTTAGCGAGCGCGAGCGCTACGAGGC
GTTTAACCCAAAGGACGACGATCGGGATAAGCATCTAGAAGCAACTCGTG
AGGCTCTAGATGCCGAGCGCAAGCGATCAGTCGCGTCAATGCAGGAAAAA
GAAGAAGCCCAGAAGCAGAAGGGGGACACACAAGCCGCTAAAGGCCGAGT
AGAAGAACAATTACTGGAGTCTCAGCAAGCCCTTGCTAGCGAGCGCGAGC
GCTACGAGGTGTTGAGCCAACAGGCCGACGCTTGGGATAAGCATCTCAAA
GCGACTCGTGAGGCTCTAAATGCCGAGCGCAAGCGATCAGTCGCGTCAAT
GCAGGAAAAAGAAGAAGCCCAGAAGCAGAAGGGGCACGCACAATCCGCCA
AAGACCGCGTGGAGGAAAACTTACTGGAGTCTCAGCGAGCCCTTGCTAGC
GAGCGCGAGCGCTACGAGGCGTTGAGCCAGCAGGCCGACGCTTGGGATAA
GAATCTCGAAGCGACTCGCGAGGCCCTAGCTGCTGAGCGTGAGCGATCGG
CCGCGTTAGTCCAAGAAAAAGAAGAGGCCCAGAAGCAGGAGGTGGAGGTA
CAAGCCGCCAAGAGGCGCGCGGAAGCTGATCTCGCTCAAACTCGCGATGA
TTTGCAGGAAGCCTTTGATGCTCTCGCCGCCGAGCGTGAGAGGTCGGCTG
CGTCGAAACAGGAGGAGGAAGAAGCCCGTAAACATAGGGAGAACGCGCAA
TCCGCCAAAGACCGTGCAGAAACCGATCTCTCGGAAATTGGCAGGGACTT
ACAGGAGTCCCGTGATGCTTTGAGCGCGTTGCGCGAGCAGTCGACTTCGT
TCAAGCGGCAAACAGAAGCGGCTCATAAGCACTTAGAGGACGCACAAGCG
GCCAAGAGCATGGCGGAAGCTGATCTGTCAAAAACTCGCGATGACTTGAT
GGAGTCCCGCCAGGTCCTGGCAATAGAGCGTGAGCGCTACGAGATGTTGA
GCCAGAAGGCCGTCGCGTCAGAGAAGCATATCGAAGCGGCGCGCGAGGCT
CGGGAGGAGCTTCATAAGTCCTGCGAGGCTCTCTCCGCCGAGCGCAAGCT
GTCGGCCGTATGGAAGCAGGAAGTAGAGGCAGCCCGTCAAGCAACCCGTC
AACTTGAAGAAAGTGCGCAAGCCACCAGGGACCGTAAAGAAGCCGATATG
GTCAAGATTCGCGATGATTTGTTCAAGTCCCAAGGGGCCCTTGCCACGGA
GCGCGATTGCCGCGAAGCTTTCAAACAAAAGTCGGACGCGTTGAACAACG
ATCTGGAGAGGGCTCGCGCGGCACAGGAGGACATCCAAGCTGCTCTCGAA
AAGGGGCGGAAAGAACTGGGCGTTCTCAGAGGGGAACTAAAAGGCGTGCG
TGAGGCGCAGACAAGGACCGAAAAAAGCCTGGCCACTGAGCGCAAGCGTT
TCGCGGATTACAAAAGGATGACGGAGGAGAAGCTGAAGCTACTTCGGCGG
GAGGCAACCAGGGTTAGTGAAGTGGAGGACGAGCTTGCGACGAAAACCCT
GCGCCTGAAACAAAAAAACGCTGAGGCGAGGGCGCTCGCTACGGACCGCA
CTGTGGTTAAGGATCTGCGAGAGAGCTTGTCCTCCAAGGTAAGACCAAAG
AAACGAAAATTGTGGTCAGAGAACGCTGATAGCCAGCAAAGGTAAAAGGT
TATGCTGAGTTGGAGAGGTTGCCCTCAATGAGCGTTGGGGTCGTTAAACA
GAAATTAACCCTTGCCGAGACGATAACTTACTGTATCCCACCGACCTTCC
GCCCTGCAGGACAACGCCCTGAACGAACTCAGGCAGGAGCTGAACAGCCT
GCGCCAAATATCCACTACAACAGCCTCGAAACAACGAAGCCCTCGGCTCC
AGAAACAGCAACAGCAACAGGACTACCGTGCTACGGCTAGCGCTGCCAGT
GCGGCCAGCCCAAGCAATTTCAACGCTAGTCCGACGCTGGACCTGACTCG
TACGTTTTCGCTCTCATCCATGGGATCTCTCGGCGACGTGGGGTCCGGGC
TGGATGCCATCGTGGAAGAAGCCGAAGCCCGCGAATCCTCTTCGGAAGAA
GGAGATGCAGGCGTGGATGATTCGGCGGCTCCTTCGCCGTCTGGAAGCGA
TGCAGGAGGCGAGGGAGTATCTCCCGGTGCCGGTGTGGCAGAGCTCCCGG
CGAGCCCCCCCCGACTAAAGCTCGACCTTGTGCACTTCGATGATGATTTG
GACGAGGATGATGAGGACCAAAAAAGCAACAATCATGATGTTTTCGCTGG
AAAGTTTTCCGCAGCGGACAAGGAGGCATCTCTCGTTGGAAGGTGGAACA
GCGTCGTAGGCTCGCGCGCCACCGCTCGCCCTGCCAAAGCCTCTGTCAGC
CTGTCTCCGACCCGTCGGCTTGGAACGAAGTCGCGCGCCAGCGAGGCCCC
CGGGAGCAGGAGCCTGTCGCCTCTTCCTTGTCGACCGTCGAGGGCGAGCT
GGTGCATAGGCGGTCTGAGCCAGTCGCATGCGCAACTGAAGATGCCGGCA
GCTAACTGTCTTTCGTCCACGTTGACGTCTACGCGAAAGCTTGATCCGGT
GGACCACGGCCTCGGCAGGCAGGGTAACGCCGTCGTTCTCGAGCTAGGGG
CCTGGAGAGTGAGGGTCGGGGTGGTGGCGAACGCGGAAGGGGGAGGACTC
GGTGTTAAGTCTTTCTTCGACGATTTTCCTTGCTGTATGGCGAGGCCGAT
GCGTGAGGGCGCGGACTTAGACGAGCTGGTAAACGGGGCGTCTTCACTCG
CGGCGCCGATGTACGCCAAATTCAGAGAGTGAGTCACAGCGTGTATGGTG
TAGCTATATGTCAATCGGCAGTCAGAAATTCCAAGGTGTCCGTGTGGAGG
AATTCTCGTTTTGTCGTTTCGAGGCGCCTATCTGTGAGATGAAATATACC
CTCTTAACGACAAAAATTAGAGGTAGGACGAGCTTGGTGGAATTATAAAA
CACACACACATACACACTTTTACTGTAAATTATCTCGTCGTTCACTTATC
TGATGCTCGACGATGCAGGACCGGCGTTTTCGTGGGAGGCGACGCATGGT
ACTGCTGCCTTGATCACCCTTCGATCGCCCTCCGTTCCAAGCTACAGCTC
TCCTGTCCGATGCAGCGTGGGCGAAAGCTGAATAGGGAAGATACGAACAT
GTTAATGGATCACGCGTTCAGATTGCTGAACCAAGATCCGGCGTGCGCCC
CTACACTGCTCACGTATAAGCCCACGGCAACAGCCGACGAGGTGCTGGAT
ATGGTGTCGGTACTGCTGGAAGCACACCAGGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig18045:2373..7205+

>mRNA_H-elongata_contig18045.4804.1 ID=mRNA_H-elongata_contig18045.4804.1|Name=mRNA_H-elongata_contig18045.4804.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=7476bp|location=Sequence derived from alignment at H-elongata_contig18045:2373..7205+ (Himanthalia elongata Himel1 dioecious)
TCAGACACGGCAAACATAGCGGCGAAAGCGGAAGCCTCGTTGGCTCAGCT
AAACAATGACTTCCGCTCGTTTCGGGAGAGCATATCTCAGGATAGACGGG
CTTTGCAGGAGGCAAAGGAAGAGCTGGCCGAGATTCATGAGCGCTTCGTG
GTTTTCCAGCGAGACGCCGAAGCAAGCGCCGCTCGGAAGGATGCTGAGTT
CAGCGCTGCCTCGGCAGAAACGGAATGTACGCTAGAACAAGCGCGAGAGG
AGTTGAGGGTTTTCCGACTCAAGACTGGCGGTGACGTTGACGTACTCCGC
GAATACGAAGAGGCGTTGTCCAAAGAGCGAGAATACGTGACATCGTTCAA
GAGAGAGGCGGAGGACGCCCGCCAGAAGCTGGAGGAAGAGCGGAGGGCCA
GAGAGAGCGCGAAGGCCGATCTCGTCGACGCTTGCAAGGCGCTGGAGATG
ACAAAGGACTCTCTTTCATTGAACCACGAGCGGTGTGTAAAGTCTACGCG
GGACAACGAGGCAGCTCGTGATATGCTGAAGGAATCACAGGCAGCGAAGG
AGAGGATTGAAGCCGACCTCGCCAAGGCTCACGAAGAAATCCGCATTTCC
AACGAAAAAAACGAAAACAGGGCGGAAGAGCTCCGCAAGTCCCTCGAGGC
TCTGGCCGCTCAGCGAGAGCGGTCGGCCACGTTGCTGCAAGAAGTTGACG
CAGCCCTTAAGCTCCAGGAGGCTACACAAGCCGCCAGGGACCGCGCGGAA
GCTGATCTCGCCGAAACTCGCGATGGTTTGCAGGAGTCCCGCGAAGCTCT
GGCGGCCGAGCGCGAGCGATCTGAGGCACTAAGCCAGAAATCCGATGCGA
TGGACGAGCATGCCAAGACAGCACGCGCGGCGCTGGAAGAGTCCCATATG
TTGCGACAAGCTCTTGCCTCCGAGCGCGTACTGTCAGCCGCATTGGGTTT
GGAAGCGGACGCAACCCGTAAGCTCCAAGAGGATGCGCAAATCACCAAAG
ATAGCGCGATAACCGAAATCACCGAAATTCGCAATGTCTTGCGGGAAACC
CGTGAATCTCTGGCCGTCGAGCGCCAGCAATCGGCAGCGTCGAAGCGGGA
AAATGAAGAAGTGCTCAGACACGGCAAACATAGCGGCGAAAGCGGAAGCC
TCGTTGGCTCAGCTAAACAATGACTTCCGCTCGTTTCGGGAGAGCATATC
TCAGGATAGACGGGCTTTGCAGGAGGCAAAGGAAGAGCTGGCCGAGATTC
ATGAGCGCTTCGTGGTTTTCCAGCGAGACGCCGAAGCAAGCGCCGCTCGG
AAGGATGCTGAGTTCAGCGCTGCCTCGGCAGAAACGGAATGTACGCTAGA
ACAAGCGCGAGAGGAGTTGAGGGTTTTCCGACTCAAGACTGGCGGTGACG
TTGACGTACTCCGCGAATACGAAGAGGCGTTGTCCAAAGAGCGAGAATAC
GTGACATCGTTCAAGAGAGAGGCGGAGGACGCCCGCCAGAAGCTGGAGGA
AGAGCGGAGGGCCAGAGAGAGCGCGAAGGCCGATCTCGTCGACGCTTGCA
AGGCGCTGGAGATGACAAAGGACTCTCTTTCATTGAACCACGAGCGGTGT
GTAAAGTCTACGCGGGACAACGAGGCAGCTCGTGATATGCTGAAGGAATC
ACAGGCAGCGAAGGAGAGGATTGAAGCCGACCTCGCCAAGGCTCACGAAG
AAATCCGCATTTCCAACGAAAAAAACGAAAACAGGGCGGAAGAGCTCCGC
AAGTCCCTCGAGGCTCTGGCCGCTCAGCGAGAGCGGTCGGCCACGTTGCT
GCAAGAAGTTGACGCAGCCCTTAAGCTCCAGGAGGCTACACAAGCCGCCA
GGGACCGCGCGGAAGCTGATCTCGCCGAAACTCGCGATGGTTTGCAGGAG
TCCCGCGAAGCTCTGGCGGCCGAGCGCGAGCGATCTGAGGCACTAAGCCA
GAAATCCGATGCGATGGACGAGCATGCCAAGACAGCACGCGCGGCGCTGG
AAGAGTCCCATATGTTGCGACAAGCTCTTGCCTCCGAGCGCGTACTGTCA
GCCGCATTGGGTTTGGAAGCGGACGCAACCCGTAAGCTCCAAGAGGATGC
GCAAATCACCAAAGATAGCGCGATAACCGAAATCACCGAAATTCGCAATG
TCTTGCGGGAAACCCGTGAATCTCTGGCCGTCGAGCGCCAGCAATCGGCA
GCGTCGAAGCGGGAAAATGAAGAAGTGCCCGCTAAAGGCCACCTAGAAGA
ACAACTACTGGAGTCTCAGCGAGCCCTTGTTAGCGAGCGCGAGCGCTACG
AGGCGTTTAACCCAAAGGACGACGATCGGGATAAGCATCTAGAAGCAACT
CGTGAGGCTCTAGATGCCGAGCGCAAGCGATCAGTCGCGTCAATGCAGGA
AAAAGAAGAAGCCCAGAAGCAGAAGGGGGACACACAAGCCGCTAAAGGCC
GAGTAGAAGAACAATTACTGGAGTCTCAGCAAGCCCTTGCTAGCGAGCGC
GAGCGCTACGAGGTGTTGAGCCAACAGGCCGACGCTTGGGATAAGCATCT
CAAAGCGACTCGTGAGGCTCTAAATGCCGAGCGCAAGCGATCAGTCGCGT
CAATGCAGGAAAAAGAAGAAGCCCAGAAGCAGAAGGGGCACGCACAATCC
GCCAAAGACCGCGTGGAGGAAAACTTACTGGAGTCTCAGCGAGCCCTTGC
TAGCGAGCGCGAGCGCTACGAGGCGTTGAGCCAGCAGGCCGACGCTTGGG
ATAAGAATCTCGAAGCGACTCGCGAGGCCCTAGCTGCTGAGCGTGAGCGA
TCGGCCGCGTTAGTCCAAGAAAAAGAAGAGGCCCAGAAGCAGGAGGTGGA
GGTACAAGCCGCCAAGAGGCGCGCGGAAGCTGATCTCGCTCAAACTCGCG
ATGATTTGCAGGAAGCCTTTGATGCTCTCGCCGCCGAGCGTGAGAGGTCG
GCTGCGTCGAAACAGGAGGAGGAAGAAGCCCGTAAACATAGGGAGAACGC
GCAATCCGCCAAAGACCGTGCAGAAACCGATCTCTCGGAAATTGGCAGGG
ACTTACAGGAGTCCCGTGATGCTTTGAGCGCGTTGCGCGAGCACCGCTAA
AGGCCACCTAGAAGAACAACTACTGGAGTCTCAGCGAGCCCTTGTTAGCG
AGCGCGAGCGCTACGAGGCGTTTAACCCAAAGGACGACGATCGGGATAAG
CATCTAGAAGCAACTCGTGAGGCTCTAGATGCCGAGCGCAAGCGATCAGT
CGCGTCAATGCAGGAAAAAGAAGAAGCCCAGAAGCAGAAGGGGGACACAC
AAGCCGCTAAAGGCCGAGTAGAAGAACAATTACTGGAGTCTCAGCAAGCC
CTTGCTAGCGAGCGCGAGCGCTACGAGGTGTTGAGCCAACAGGCCGACGC
TTGGGATAAGCATCTCAAAGCGACTCGTGAGGCTCTAAATGCCGAGCGCA
AGCGATCAGTCGCGTCAATGCAGGAAAAAGAAGAAGCCCAGAAGCAGAAG
GGGCACGCACAATCCGCCAAAGACCGCGTGGAGGAAAACTTACTGGAGTC
TCAGCGAGCCCTTGCTAGCGAGCGCGAGCGCTACGAGGCGTTGAGCCAGC
AGGCCGACGCTTGGGATAAGAATCTCGAAGCGACTCGCGAGGCCCTAGCT
GCTGAGCGTGAGCGATCGGCCGCGTTAGTCCAAGAAAAAGAAGAGGCCCA
GAAGCAGGAGGTGGAGGTACAAGCCGCCAAGAGGCGCGCGGAAGCTGATC
TCGCTCAAACTCGCGATGATTTGCAGGAAGCCTTTGATGCTCTCGCCGCC
GAGCGTGAGAGGTCGGCTGCGTCGAAACAGGAGGAGGAAGAAGCCCGTAA
ACATAGGGAGAACGCGCAATCCGCCAAAGACCGTGCAGAAACCGATCTCT
CGGAAATTGGCAGGGACTTACAGGAGTCCCGTGATGCTTTGAGCGCGTTG
CGCGAGCATGCGCAAGCCACCAGGGACCGTAAAGAAGCCGATATGGTCAA
GATTCGCGATGATTTGTTCAAGTCCCAAGGGGCCCTTGCCACGGAGCGCG
ATTGCCGCGAAGCTTTCAAACAAAAGTCGGACGCGTTGAACAACGATCTG
GAGAGGGCTCGCGCGGCACAGGAGGACATCCAAGCTGCTCTCGAAAAGGG
GCGGAAAGAACTGGGCGTTCTCAGAGGGGAACTAAAAGGCGTGCGTGAGG
CGCAGACAAGGACCGAAAAAAGCCTGGCCACTGAGCGCAAGCGTTTCGCG
GATTACAAAAGGATGACGGAGGAGAAGCTGAAGCTACTTCGGCGGGAGGC
AACCAGGGTTAGTGAAGTGGAGGACGAGCTTGCGACGAAAACCCTGCGCC
TGAAACAAAAAAACGCTGAGGCGAGGGCGCTCGCTACGGACCGCACTGTG
GTTAAGGATCTGCGAGAGAGCTTGTCCTCCAAGTGCGCAAGCCACCAGGG
ACCGTAAAGAAGCCGATATGGTCAAGATTCGCGATGATTTGTTCAAGTCC
CAAGGGGCCCTTGCCACGGAGCGCGATTGCCGCGAAGCTTTCAAACAAAA
GTCGGACGCGTTGAACAACGATCTGGAGAGGGCTCGCGCGGCACAGGAGG
ACATCCAAGCTGCTCTCGAAAAGGGGCGGAAAGAACTGGGCGTTCTCAGA
GGGGAACTAAAAGGCGTGCGTGAGGCGCAGACAAGGACCGAAAAAAGCCT
GGCCACTGAGCGCAAGCGTTTCGCGGATTACAAAAGGATGACGGAGGAGA
AGCTGAAGCTACTTCGGCGGGAGGCAACCAGGGTTAGTGAAGTGGAGGAC
GAGCTTGCGACGAAAACCCTGCGCCTGAAACAAAAAAACGCTGAGGCGAG
GGCGCTCGCTACGGACCGCACTGTGGTTAAGGATCTGCGAGAGAGCTTGT
CCTCCAAGGACAACGCCCTGAACGAACTCAGGCAGGAGCTGAACAGCCTG
CGCCAAATATCCACTACAACAGCCTCGAAACAACGAAGCCCTCGGCTCCA
GAAACAGCAACAGCAACAGGACTACCGTGCTACGGCTAGCGCTGCCAGTG
CGGCCAGCCCAAGCAATTTCAACGCTAGTCCGACGCTGGACCTGACTCGT
ACGTTTTCGCTCTCATCCATGGGATCTCTCGGCGACGTGGGGTCCGGGCT
GGATGCCATCGTGGAAGAAGCCGAAGCCCGCGAATCCTCTTCGGAAGAAG
GAGATGCAGGCGTGGATGATTCGGCGGCTCCTTCGCCGTCTGGAAGCGAT
GCAGGAGGCGAGGGAGTATCTCCCGGTGCCGGTGTGGCAGAGCTCCCGGC
GAGCCCCCCCCGACTAAAGCTCGACCTTGTGCACTTCGATGATGATTTGG
ACGAGGATGATGAGGACCAAAAAAGCAACAATCATGATGTTTTCGCTGGA
AAGTTTTCCGCAGCGGACAAGGAGGCATCTCTCGTTGGAAGGTGGAACAG
CGTCGTAGGCTCGCGCGCCACCGCTCGCCCTGCCAAAGCCTCTGTCAGCC
TGTCTCCGACCCGTCGGCTTGGAACGAAGTCGCGCGCCAGCGAGGCCCCC
GGGAGCAGGAGCCTGTCGCCTCTTCCTTGTCGACCGTCGAGGGCGAGCTG
GTGCATAGGCGGTCTGAGCCAGTCGCATGCGCAACTGAAGATGCCGGCAG
CTAACTGTCTTTCGTCCACGTTGACGTCTACGCGAAAGCTTGATCCGGTG
GACCACGGCCTCGGCAGGCAGGGTAACGCCGTCGTTCTCGAGCTAGGGGC
CTGGAGAGTGAGGGTCGGGGTGGTGGCGAACGCGGAAGGGGGAGGACTCG
GTGTTAAGTCTTTCTTCGACGATTTTCCTTGCTGTATGGCGAGGCCGATG
CGTGAGGGCGCGGACTTAGACGAGCTGGTAAACGGGGCGTCTTCACTCGC
GGCGCCGATGTACGCCAAATTCAGAGAGACAACGCCCTGAACGAACTCAG
GCAGGAGCTGAACAGCCTGCGCCAAATATCCACTACAACAGCCTCGAAAC
AACGAAGCCCTCGGCTCCAGAAACAGCAACAGCAACAGGACTACCGTGCT
ACGGCTAGCGCTGCCAGTGCGGCCAGCCCAAGCAATTTCAACGCTAGTCC
GACGCTGGACCTGACTCGTACGTTTTCGCTCTCATCCATGGGATCTCTCG
GCGACGTGGGGTCCGGGCTGGATGCCATCGTGGAAGAAGCCGAAGCCCGC
GAATCCTCTTCGGAAGAAGGAGATGCAGGCGTGGATGATTCGGCGGCTCC
TTCGCCGTCTGGAAGCGATGCAGGAGGCGAGGGAGTATCTCCCGGTGCCG
GTGTGGCAGAGCTCCCGGCGAGCCCCCCCCGACTAAAGCTCGACCTTGTG
CACTTCGATGATGATTTGGACGAGGATGATGAGGACCAAAAAAGCAACAA
TCATGATGTTTTCGCTGGAAAGTTTTCCGCAGCGGACAAGGAGGCATCTC
TCGTTGGAAGGTGGAACAGCGTCGTAGGCTCGCGCGCCACCGCTCGCCCT
GCCAAAGCCTCTGTCAGCCTGTCTCCGACCCGTCGGCTTGGAACGAAGTC
GCGCGCCAGCGAGGCCCCCGGGAGCAGGAGCCTGTCGCCTCTTCCTTGTC
GACCGTCGAGGGCGAGCTGGTGCATAGGCGGTCTGAGCCAGTCGCATGCG
CAACTGAAGATGCCGGCAGCTAACTGTCTTTCGTCCACGTTGACGTCTAC
GCGAAAGCTTGATCCGGTGGACCACGGCCTCGGCAGGCAGGGTAACGCCG
TCGTTCTCGAGCTAGGGGCCTGGAGAGTGAGGGTCGGGGTGGTGGCGAAC
GCGGAAGGGGGAGGACTCGGTGTTAAGTCTTTCTTCGACGATTTTCCTTG
CTGTATGGCGAGGCCGATGCGTGAGGGCGCGGACTTAGACGAGCTGGTAA
ACGGGGCGTCTTCACTCGCGGCGCCGATGTACGCCAAATTCAGAGAGACC
GGCGTTTTCGTGGGAGGCGACGCATGGTACTGCTGCCTTGATCACCCTTC
GATCGCCCTCCGTTCCAAGCTACAGCTCTCCTGTCCGATGCAGCGTGGGC
GAAAGCTGAATAGGGAAGATACGAACATGTTAATGGATCACGCGTTCAGA
TTGCTGAACCAAGATCCGGCGTGCGCCCCTACACTGCTCACGTATAAGCC
CACGGCAACAGCCGACGAGGTGCTGGATATGGTGTCGGTACTGCTGGAAG
CACACCAGGTGGACCGGCGTTTTCGTGGGAGGCGACGCATGGTACTGCTG
CCTTGATCACCCTTCGATCGCCCTCCGTTCCAAGCTACAGCTCTCCTGTC
CGATGCAGCGTGGGCGAAAGCTGAATAGGGAAGATACGAACATGTTAATG
GATCACGCGTTCAGATTGCTGAACCAAGATCCGGCGTGCGCCCCTACACT
GCTCACGTATAAGCCCACGGCAACAGCCGACGAGGTGCTGGATATGGTGT
CGGTACTGCTGGAAGCACACCAGGTG
back to top