mRNA_H-elongata_contig18006.4788.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18006.4788.1
Unique NamemRNA_H-elongata_contig18006.4788.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18006.4788.1 vs. uniprot
Match: D7G7Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Z9_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.150e-21
Identity = 50/56 (89.29%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    4 QVGEVNKLAPQSLADIAKEIATDADKFTISFPQDLKVETKATALMALLVVDLLFFE 171
            +VGEV KLAP SLADIAKEIATDADKFTISFPQDLKVETKATAL++LL+VDLLFFE
Sbjct:  462 RVGEVKKLAPSSLADIAKEIATDADKFTISFPQDLKVETKATALVSLLLVDLLFFE 517
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BLAST of mRNA_H-elongata_contig18006.4788.1 vs. uniprot
Match: A0A6H5JM82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM82_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 6.760e-12
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    4 QVGEVNKLAPQSLADIAKEIATDADKFTISFPQDLKVET 120
            +VGEV KLAP SLADIAKEIATDADKFTISFPQDLK  T
Sbjct:  571 RVGEVKKLAPSSLADIAKEIATDADKFTISFPQDLKART 609
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BLAST of mRNA_H-elongata_contig18006.4788.1 vs. uniprot
Match: A0A7S2V2C3_9STRA (Phospholipid scramblase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2C3_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.970e-10
Identity = 28/56 (50.00%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    4 QVGEVNKLAPQSLADIAKEIATDADKFTISFPQDLKVETKATALMALLVVDLLFFE 171
            ++G V K+ P   + +A+E  TDAD F + FP+DLKVETKAT L A++++D +FFE
Sbjct:  197 EIGNVVKVKPNGCSGLAREAFTDADNFNVDFPKDLKVETKATILGAMMLIDFMFFE 252
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BLAST of mRNA_H-elongata_contig18006.4788.1 vs. uniprot
Match: A0A267DTL2_9PLAT (Phospholipid scramblase n=2 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267DTL2_9PLAT)

HSP 1 Score: 54.3 bits (129), Expect = 3.450e-7
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:    1 DQVGEVNKLAPQSLADIAKEIATDADKFTISFPQDLKVETKATALMALLVVDLLFFE 171
            D+  EV +L  +  A  AKEI TDAD F +  PQD+ VETKAT + A+L++D +FFE
Sbjct:  160 DETHEVGRLHKE-WAGFAKEILTDADTFLLEVPQDMAVETKATLVAAVLLIDFMFFE 215
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BLAST of mRNA_H-elongata_contig18006.4788.1 vs. uniprot
Match: A0A1E7FMS7_9STRA (Phospholipid scramblase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FMS7_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 3.240e-6
Identity = 25/56 (44.64%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    4 QVGEVNKLAPQSLADIAKEIATDADKFTISFPQDLKVETKATALMALLVVDLLFFE 171
            ++G++ K  P  LA++AKE+ATDAD FT+  P  +K + K   L AL ++D +FFE
Sbjct:  209 KLGKIVKEKPDGLANLAKELATDADNFTMHVPPTMKPQEKGVMLAALHLIDYMFFE 264
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BLAST of mRNA_H-elongata_contig18006.4788.1 vs. uniprot
Match: A0A7S0CC20_9STRA (Phospholipid scramblase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CC20_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 4.560e-6
Identity = 25/57 (43.86%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:    1 DQVGEVNKLAPQSLADIAKEIATDADKFTISFPQDLKVETKATALMALLVVDLLFFE 171
            + +G++ K AP+ + D  KE+ATDAD FT+  P++L  + KA  L AL ++D +FFE
Sbjct:  197 EYMGKIVKEAPEGIGDALKELATDADNFTMYVPKELDPKKKAAMLGALHLIDYMFFE 253
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BLAST of mRNA_H-elongata_contig18006.4788.1 vs. uniprot
Match: A0A2G8KQD7_STIJA (Phospholipid scramblase n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KQD7_STIJA)

HSP 1 Score: 49.3 bits (116), Expect = 1.460e-5
Identity = 25/57 (43.86%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 DQVGEVNKLAPQSLADIAKEIATDADKFTISFPQDLKVETKATALMALLVVDLLFFE 171
            D+  E+ K+  Q  A   +E+ T AD F+I FP DL+V+TKA  + A+L++D +FFE
Sbjct:  101 DETEEIGKITKQ-WAGYVQEVFTKADNFSIQFPMDLEVKTKAILIGAVLLIDFMFFE 156
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BLAST of mRNA_H-elongata_contig18006.4788.1 vs. uniprot
Match: A0A835Z4E1_9STRA (Scramblase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4E1_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 2.260e-5
Identity = 20/46 (43.48%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   34 QSLADIAKEIATDADKFTISFPQDLKVETKATALMALLVVDLLFFE 171
            + + ++ ++  +DAD F I+FPQDLKVETKA+ +  + ++D +FFE
Sbjct:  741 KGIGEVLRKAVSDADNFNITFPQDLKVETKASVIATMFLLDFMFFE 786
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BLAST of mRNA_H-elongata_contig18006.4788.1 vs. uniprot
Match: A0A6A4VMK1_AMPAM (Phospholipid scramblase n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VMK1_AMPAM)

HSP 1 Score: 48.5 bits (114), Expect = 4.700e-5
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 DQVGEVNKLAPQSLADIAKEIATDADKFTISFPQDLKVETKATALMALLVVDLLFFE 171
            D   EV  +  Q  + + +E+ TD+D F++SFP DL V  KAT L ALL+VD +FFE
Sbjct:  177 DDEQEVGSIRKQ-WSGVLREMVTDSDTFSVSFPIDLDVSLKATLLGALLLVDFMFFE 232
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BLAST of mRNA_H-elongata_contig18006.4788.1 vs. uniprot
Match: A0A3M7SNC1_BRAPC (Phospholipid scramblase n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7SNC1_BRAPC)

HSP 1 Score: 48.5 bits (114), Expect = 4.910e-5
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    4 QVGEVNKLAPQSLADIAKEIATDADKFTISFPQDLKVETKATALMALLVVDLLFFE 171
            QVG+++K+     A  AKE+ T AD F+I+FP DL V+TKA  + AL ++D  +FE
Sbjct:  193 QVGKLSKV----YAGFAKEMFTQADNFSINFPTDLSVKTKAALIGALFLIDFTYFE 244
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18006.4788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7G7Z9_ECTSI1.150e-2189.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM82_9PHAE6.760e-1287.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V2C3_9STRA5.970e-1050.00Phospholipid scramblase n=1 Tax=Fibrocapsa japonic... [more]
A0A267DTL2_9PLAT3.450e-750.88Phospholipid scramblase n=2 Tax=Macrostomum lignan... [more]
A0A1E7FMS7_9STRA3.240e-644.64Phospholipid scramblase n=1 Tax=Fragilariopsis cyl... [more]
A0A7S0CC20_9STRA4.560e-643.86Phospholipid scramblase n=1 Tax=Proboscia inermis ... [more]
A0A2G8KQD7_STIJA1.460e-543.86Phospholipid scramblase n=1 Tax=Stichopus japonicu... [more]
A0A835Z4E1_9STRA2.260e-543.48Scramblase-domain-containing protein n=1 Tax=Tribo... [more]
A0A6A4VMK1_AMPAM4.700e-547.37Phospholipid scramblase n=2 Tax=Amphibalanus amphi... [more]
A0A3M7SNC1_BRAPC4.910e-546.43Phospholipid scramblase n=1 Tax=Brachionus plicati... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18006contigH-elongata_contig18006:294..844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue6.9e-18
Seed eggNOG ortholog2880.D7G7Z9
Preferred namePLSCR5
KEGG koko:K04818
KEGG TC1.A.9.1
KEGG Pathwayko04080,map04080
GOsGO:0000981,GO:0000982,GO:0001077,GO:0001228,GO:0001300,GO:0001775,GO:0002237,GO:0002252,GO:0002376,GO:0002520,GO:0002526,GO:0002682,GO:0002684,GO:0002694,GO:0003674,GO:0003700,GO:0005102,GO:0005154,GO:0005215,GO:0005319,GO:0005488,GO:0005509,GO:0005515,GO:0005548,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005794,GO:0005829,GO:0005886,GO:0005887,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006575,GO:0006629,GO:0006644,GO:0006650,GO:0006658,GO:0006659,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006915,GO:0006950,GO:0006952,GO:0006953,GO:0006954,GO:0006955,GO:0006979,GO:0007009,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007275,GO:0007568,GO:0007569,GO:0007596,GO:0007599,GO:0008150,GO:0008152,GO:0008219,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009605,GO:0009607,GO:0009611,GO:0009615,GO:0009617,GO:0009628,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009898,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010256,GO:0010467,GO:0010468,GO:0010506,GO:0010507,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010639,GO:0010646,GO:0010647,GO:0010821,GO:0010823,GO:0010876,GO:0010911,GO:0010912,GO:0010941,GO:0010942,GO:0012501,GO:0012505,GO:0015711,GO:0015748,GO:0015914,GO:0016020,GO:0016021,GO:0016043,GO:0016070,GO:0017121,GO:0017124,GO:0017128,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019637,GO:0019899,GO:0019904,GO:0023051,GO:0023052,GO:0023056,GO:0030097,GO:0030099,GO:0030154,GO:0030168,GO:0031012,GO:0031224,GO:0031225,GO:0031226,GO:0031235,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032091,GO:0032496,GO:0032501,GO:0032502,GO:0032774,GO:0032781,GO:0033003,GO:0033036,GO:0033043,GO:0033500,GO:0033554,GO:0033993,GO:0034097,GO:0034599,GO:0034605,GO:0034641,GO:0034645,GO:0034654,GO:0035455,GO:0035456,GO:0035556,GO:0042060,GO:0042221,GO:0042398,GO:0042592,GO:0042593,GO:0042609,GO:0042632,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043462,GO:0043900,GO:0043901,GO:0043903,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044271,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045017,GO:0045069,GO:0045071,GO:0045088,GO:0045089,GO:0045121,GO:0045893,GO:0045935,GO:0045944,GO:0046474,GO:0046483,GO:0046486,GO:0046658,GO:0046872,GO:0048306,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048525,GO:0048534,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050792,GO:0050794,GO:0050817,GO:0050865,GO:0050878,GO:0050896,GO:0051098,GO:0051100,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051336,GO:0051345,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0055088,GO:0055092,GO:0060255,GO:0060368,GO:0061024,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070782,GO:0070851,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071345,GO:0071396,GO:0071702,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090407,GO:0097035,GO:0097190,GO:0097193,GO:0097194,GO:0097659,GO:0098542,GO:0098552,GO:0098562,GO:0098589,GO:0098753,GO:0098805,GO:0098857,GO:0098916,GO:0099536,GO:0099537,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1901701,GO:1902229,GO:1902231,GO:1902531,GO:1902533,GO:1902680,GO:1903146,GO:1903147,GO:1903506,GO:1903508,GO:1903900,GO:1903901,GO:2000112,GO:2000371,GO:2000373,GO:2001020,GO:2001022,GO:2001141,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.phospholipid scrambling
EggNOG OGsKOG0621@1,KOG0621@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Hectar predicted targeting categoryother localisation
Exons2
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930038.5578039-CDS-H-elongata_contig18006:293..4041622930038.5578039-CDS-H-elongata_contig18006:293..404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18006 294..404 +
1691679257.0737488-CDS-H-elongata_contig18006:293..4041691679257.0737488-CDS-H-elongata_contig18006:293..404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18006 294..404 +
1622930038.5760236-CDS-H-elongata_contig18006:772..8441622930038.5760236-CDS-H-elongata_contig18006:772..844Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18006 773..844 +
1691679257.0842729-CDS-H-elongata_contig18006:772..8441691679257.0842729-CDS-H-elongata_contig18006:772..844Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18006 773..844 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18006.4788.1prot_H-elongata_contig18006.4788.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18006 294..844 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18006.4788.1

>prot_H-elongata_contig18006.4788.1 ID=prot_H-elongata_contig18006.4788.1|Name=mRNA_H-elongata_contig18006.4788.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
DQVGEVNKLAPQSLADIAKEIATDADKFTISFPQDLKVETKATALMALLV
VDLLFFEVII*
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mRNA from alignment at H-elongata_contig18006:294..844+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18006.4788.1 ID=mRNA_H-elongata_contig18006.4788.1|Name=mRNA_H-elongata_contig18006.4788.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=551bp|location=Sequence derived from alignment at H-elongata_contig18006:294..844+ (Himanthalia elongata Himel1 dioecious)
GATCAGGTTGGGGAGGTAAACAAGCTGGCTCCGCAGTCTCTGGCGGATAT
TGCGAAAGAAATCGCGACGGACGCAGACAAGTTCACCATCAGCTTTCCAC
AGGATCTGAAGGTCAAGACTCATTCGACGCATTGCATTGGATGTCTTGTC
CTCTTCGGCCGAAACCGGACACTATTAATAGTACAGTAGTACAGGTTCCC
TGGGCACACTTGATTCGGTTGCTTGCTTCATTTGGGGTAGGCGATATGTA
TGATTTTATGGGGATCGAGAAGCCTGAGCTATGCCTTCCCAAATAGAGTA
CAGTATTACCGTTGTAGTACCATCAATGTCCACTCTAAGTTGTAACGTAT
CATGCCATATTATAACGCATCGTACTGTATCGCGTGATCGTGATGATTCC
TGTCATTTTCCGAAGCTTTCTAAATTATGTTGGCGTAATTTATTTTTCAA
TGATACCTGTCATCTTATGAGGGTGGTAGGTGGAGACGAAGGCGACGGCG
CTCATGGCACTGCTTGTGGTGGACCTCCTTTTCTTCGAGGTGATAATCTA
A
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Coding sequence (CDS) from alignment at H-elongata_contig18006:294..844+

>mRNA_H-elongata_contig18006.4788.1 ID=mRNA_H-elongata_contig18006.4788.1|Name=mRNA_H-elongata_contig18006.4788.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig18006:294..844+ (Himanthalia elongata Himel1 dioecious)
GATCAGGTTGGGGAGGTAAACAAGCTGGCTCCGCAGTCTCTGGCGGATAT
TGCGAAAGAAATCGCGACGGACGCAGACAAGTTCACCATCAGCTTTCCAC
AGGATCTGAAGGATCAGGTTGGGGAGGTAAACAAGCTGGCTCCGCAGTCT
CTGGCGGATATTGCGAAAGAAATCGCGACGGACGCAGACAAGTTCACCAT
CAGCTTTCCACAGGATCTGAAGGTGGAGACGAAGGCGACGGCGCTCATGG
CACTGCTTGTGGTGGACCTCCTTTTCTTCGAGGTGATAATCTAAGTGGAG
ACGAAGGCGACGGCGCTCATGGCACTGCTTGTGGTGGACCTCCTTTTCTT
CGAGGTGATAATCTAA
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