prot_H-elongata_contig17982.4778.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig17982.4778.1
Unique Nameprot_H-elongata_contig17982.4778.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length163
Homology
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BLAST of mRNA_H-elongata_contig17982.4778.1 vs. uniprot
Match: D7FJY9_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJY9_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 1.630e-50
Identity = 91/157 (57.96%), Postives = 107/157 (68.15%), Query Frame = 0 
Query:    1 MLTLFYVCISSGAMLYVLWGKSEGGHEDS------------LGWMRLMETLGFIVDWLLLASIFCSVSYLLLWHGYLVASNVTTIEYFKWKRSMRDPGQYALAPGASIRLTDYDRGLLANLHEALGHEIYLWLWPGFGEGCGNRYCVVDRGVSETGE 145
            +LTL Y C+SSGAML +LW +   G                +GW+   E  G  VD L+L  +FCSVSYLL+WHGYLVA NVTTIEYFKWKRSMRDPGQYAL+PGASIRL++YD GLL+NL EA G  ++LW WPG G+GC NR     RG S  GE
Sbjct:  162 LLTLLYACLSSGAMLVILWRRWRMGRAPESGSAAATSGGVVVGWV---EMAGVAVDGLVLGFVFCSVSYLLIWHGYLVAGNVTTIEYFKWKRSMRDPGQYALSPGASIRLSEYDSGLLSNLKEAFGQRLWLWPWPGLGDGCCNR----SRGASVRGE 311
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17982.4778.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJY9_ECTSI1.630e-5057.96Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 39..60
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 61..163
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..10
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..38
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15
NoneNo IPR availableTMHMMTMhelixcoord: 39..61
NoneNo IPR availableTMHMMTMhelixcoord: 2..19

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17982contigH-elongata_contig17982:186..1641 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17982.4778.1mRNA_H-elongata_contig17982.4778.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig17982 177..1641 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig17982.4778.1 ID=prot_H-elongata_contig17982.4778.1|Name=mRNA_H-elongata_contig17982.4778.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=163bp
MLTLFYVCISSGAMLYVLWGKSEGGHEDSLGWMRLMETLGFIVDWLLLAS
IFCSVSYLLLWHGYLVASNVTTIEYFKWKRSMRDPGQYALAPGASIRLTD
YDRGLLANLHEALGHEIYLWLWPGFGEGCGNRYCVVDRGVSETGEGDGDG
EGGGTIAGGWWAG
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