prot_H-elongata_contig179659.4769.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig179659.4769.1
Unique Nameprot_H-elongata_contig179659.4769.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length179
Homology
BLAST of mRNA_H-elongata_contig179659.4769.1 vs. uniprot
Match: A0A146H803_MYCCL (CCHC-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H803_MYCCL)

HSP 1 Score: 65.5 bits (158), Expect = 1.850e-9
Identity = 45/179 (25.14%), Postives = 79/179 (44.13%), Query Frame = 0
Query:    1 LVKADADKRVFFSTKSPVAGWDRVASFHRAETQGAKLLFSRQVLSARLQPNKDPEIVIGEIVELLVALNEVGIPVHEEFIWLHFVDNLSPGYEFIKNNLQGSKEPLTRAVLEDALRRRYNVQSIGKKGRTIPETALFVSGSKAGRGISKGSSSSQVKITCNHCQKPGHIRPNCPERQCF 179
            +++ D  +  + ++  P   W  +   HRA      L   RQ L+++ + ++  E  IG I  +++ +   GI V E+   L F   L   YE +  N   +  P  +  +E  + R  N ++          T    +GS A   I+  +   Q  +TC  C K GH++ +CPERQ +
Sbjct:   81 ILRVDGGQLPYMTSSDPREIWLALQRMHRAAGFATSLALRRQFLTSKKRDDQSMEAWIGYIQAMVIRMKYAGINVTEQDKILAFTMGLPAAYEAVIINFDAT--PPDQLTVEHVISRLLNEETRQASAAISAATGTSANGSPAPDDIAYAARR-QPDLTCFWCDKKGHVKNDCPERQAY 256          
BLAST of mRNA_H-elongata_contig179659.4769.1 vs. uniprot
Match: A0A803Q6S7_CANSA (CCHC-type domain-containing protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A803Q6S7_CANSA)

HSP 1 Score: 53.9 bits (128), Expect = 3.330e-5
Identity = 45/173 (26.01%), Postives = 81/173 (46.82%), Query Frame = 0
Query:   13 STKSPVAG-WDRVASFHRAETQGAKLLFSRQVLSARLQPNKDPEIVIGEIVELLVALNEVGIPVHEEFIWLHFVDNL-SPGYEFIKNNLQGSKEPLTRAVLEDALRRRYNVQSIGKKGRTIPETA---LFV------SGSKAGRGISKGSSSSQVKITCNHCQKPGHIRPNCP 174
            S ++  AG W ++ + +  ++   +L   +++ S R+ P K  E  + +  ++++ L  +GI + +E   +  +++L S  YE   + +   K  LT   +  AL  +     I +K     E A   L V       G+KA    SKG  +S+ K  C  C KP H+R +CP
Sbjct:   76 SKETTAAGMWLKLENLYMVKSLANRLFLKQKLYSFRMIPGKSVEDHLDDFNKIVLDLENIGIKIEDEDQAIIVLNSLPSEQYEHFVDTMMYGKSSLTLEEVVTALMSK----EIKRKSENSEENAGDGLLVRGKFQKKGNKAQGSPSKGKGNSKTKRRCYVCNKPTHLRKDCP 244          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179659.4769.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A146H803_MYCCL1.850e-925.14CCHC-type domain-containing protein n=1 Tax=Mycena... [more]
A0A803Q6S7_CANSA3.330e-526.01CCHC-type domain-containing protein n=1 Tax=Cannab... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 13..120
e-value: 9.2E-9
score: 35.1
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 160..175
score: 8.796
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 139..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig179659contigH-elongata_contig179659:312..917 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig179659.4769.1mRNA_H-elongata_contig179659.4769.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig179659 312..917 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig179659.4769.1 ID=prot_H-elongata_contig179659.4769.1|Name=mRNA_H-elongata_contig179659.4769.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp
LVKADADKRVFFSTKSPVAGWDRVASFHRAETQGAKLLFSRQVLSARLQP
NKDPEIVIGEIVELLVALNEVGIPVHEEFIWLHFVDNLSPGYEFIKNNLQ
GSKEPLTRAVLEDALRRRYNVQSIGKKGRTIPETALFVSGSKAGRGISKG
SSSSQVKITCNHCQKPGHIRPNCPERQCF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf