mRNA_H-elongata_contig105773.476.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig105773.476.1 vs. uniprot
Match: D6PWV8_9PHAE (PXMP2/4 family protein 2 (Fragment) n=5 Tax=Fucus TaxID=3011 RepID=D6PWV8_9PHAE) HSP 1 Score: 291 bits (744), Expect = 6.230e-97 Identity = 142/212 (66.98%), Postives = 171/212 (80.66%), Query Frame = 1
Query: 79 GDSVSTSLPTPGAQK-GLLSAYMRVLDKRPLPTKIVTSGVICAIGDVMAQALSYVNAAIGPVTLGGFLRALEFQRLVIYGLLGAVWVAPVIHYWFDILENLTKGTKAPSNTFSGKMGKALKMVVIDQSIGAPFVNSGFMFLFALATALANGMVATSAVRKASSLVRDGIWGTMLVCWKLWPIANLINFAFVPPKLRVLFLNFVGLGWNMYLS 711
GDS+S+S+ + +K G+L+ Y+RVLD+RPL TK++TSGVICAIGDV+AQALS+ N+A+ P L F ALEF+RL IYG LGAVWVAP+ HYWFD LE+ KG P +TF GKM KALKMV +DQ IGAP VN+GFMFLF LATA+ +G TSA +KA VRD I GTMLVCW+LWP+ANLINFA+VPPKLRVLFLNFVGLGWN++LS
Sbjct: 1 GDSMSSSVGSSDVEKPGVLNKYLRVLDRRPLETKMITSGVICAIGDVVAQALSFSNSAVTPNNLRSFANALEFKRLAIYGALGAVWVAPLCHYWFDALEDFFKGDNNPLDTFKGKMIKALKMVTVDQGIGAPVVNAGFMFLFTLATAMVSGTSPTSAFKKAGRFVRDNIKGTMLVCWRLWPVANLINFAYVPPKLRVLFLNFVGLGWNIFLS 212
BLAST of mRNA_H-elongata_contig105773.476.1 vs. uniprot
Match: D7G6L5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L5_ECTSI) HSP 1 Score: 293 bits (750), Expect = 1.210e-96 Identity = 150/245 (61.22%), Postives = 185/245 (75.51%), Query Frame = 1
Query: 1 MLSRARGGKLWRRPAVAVPVEIDDHIGDSVSTSLPTPGAQKGLLSAYMRVLDKRPLPTKIVTSGVICAIGDVMAQALSYVNAAIGPVTLGGFLRALEFQRLVIYGLLGAVWVAPVIHYWFDILENLTKGTKA----PSNTFSGKMGKALKMVVIDQSIGAPFVNSGFMFLFALATALANGMVATSAVRKASSLVRDGIWGTMLVCWKLWPIANLINFAFVPPKLRVLFLNFVGLGWNMYLSAAVN 723
++ RARGG L RR VAVP D+ G V + G GLL++Y+R LD +P+ TK+VTSGVIC IGD+MAQAL++ AA TLG FL ALEF+RL IYG+LGA+W+APV+HYWFD LE TK KA P+ +F+ +M KALKMV +DQ+IGAP +N+GFMFLF ATAL +G + +KA ++V++GIW TMLVCWKLWPIAN+INFAFVP KLRVLFLNFVGLGWN+YLSAAVN
Sbjct: 54 VVRRARGGVLLRRRGVAVPAP--DNGGLVVESGNKNGG--DGLLASYLRALDTKPIITKVVTSGVICGIGDIMAQALAFKTAATESFTLGSFLAALEFKRLAIYGVLGALWIAPVVHYWFDALEAATKDKKAVAGAPAPSFAMRMFKALKMVTLDQTIGAPLINAGFMFLFTFATALTSGAGGIESGKKAGTMVKNGIWSTMLVCWKLWPIANMINFAFVPAKLRVLFLNFVGLGWNIYLSAAVN 294
BLAST of mRNA_H-elongata_contig105773.476.1 vs. uniprot
Match: A0A6H5K3K4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K4_9PHAE) HSP 1 Score: 238 bits (608), Expect = 1.210e-73 Identity = 147/350 (42.00%), Postives = 180/350 (51.43%), Query Frame = 1
Query: 1 MLSRARGGKLWRRPAVAVPVEIDDHIGDSVSTSLPTPGAQKGLLSAYMRVLDKRPLPTKIV---TSGVICAIGDVMAQALSYVNAAIGPVTLGGFLRALEFQRLVIYG------------------------------------------------------------------------------------------------------LLGAVWVAPVIHYWFDILENLTKGTKA----PSNTFSGKMGKALKMVVIDQSIGAPFVNSGFMFLFALATALANGMVATSAVRKASSLVRDGIWGTMLVCWKLWPIANLINFAFVPPKLRVLFLNFVGLGWNMYLSAAVN 723
++ RARGG L RR VAVP D G V + GLL++Y+R LD +PL TK+ TSGVIC IGD+MAQAL++ AA +LG FL ALEF+RL IYG +LGA+W+APV+HYWFD LE K KA P+ +FS +M KALKMV++DQ IGAP VN+GFMFLF ATAL +G + +KA +V++GIWGTMLVCWKLWPIAN+INF +VP KLRVLF+NFVGLGWN+YLSAAVN
Sbjct: 65 VVRRARGGALLRRRGVAVPAP--DQSGLVVESG--DKNGADGLLASYLRALDTKPLITKVYQVFTSGVICGIGDIMAQALAFKTAATESFSLGSFLAALEFKRLAIYGETCLRVLPRMGIFSRLFSFCLGSSGRGVIHRHLYLRWCRERKIYRWRINKLEVEETRVEFQEEMAVNDKKFSELIEAMGTPKDAKGRDQAGSRNHRRVGKAGVLGALWIAPVVHYWFDTLEAAFKDKKAVPGAPAPSFSTRMVKALKMVILDQGIGAPLVNAGFMFLFTFATALTSGTGGIESGKKAGIMVKNGIWGTMLVCWKLWPIANMINFLYVPVKLRVLFMNFVGLGWNIYLSAAVN 410
BLAST of mRNA_H-elongata_contig105773.476.1 vs. uniprot
Match: A0A835YM13_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM13_9STRA) HSP 1 Score: 166 bits (421), Expect = 5.320e-48 Identity = 86/215 (40.00%), Postives = 131/215 (60.93%), Query Frame = 1
Query: 112 GAQKG---LLSAYMRVLDKRPLPTKIVTSGVICAIGDVMAQALSYVNAAIGPVTLGGFLRALEFQRLVIYGLLGAVWVAPVIHYWFDILENLTKGTKAPSNTFSG--------KMGKALKMVVIDQSIGAPFVNSGFMFLFALATALANGMVATSAVRKASSLVRDGIWGTMLVCWKLWPIANLINFAFVPPKLRVLFLNFVGLGWNMYLSAAVN 723
GA +G ++ YM +L++RPL TK+ T+ +IC +GDV QA+ G +L RA + +R V+YG +GA+++AP+ HYW+ L++ K P+ G ++ ALKM+ IDQ+I +P VNSGF+F +A T LA G +A+ S+ V+ +W T++ WK+WP AN +NF FVP +LR LFL+ VG+ WN+ LS+ N
Sbjct: 6 GAMEGKRSIVDRYMAILERRPLYTKMATNYLICFLGDVSCQAM-------GAGSLRALSRAFDVKRAVLYGSMGALYLAPLAHYWYGALDSAI--VKTPAGQVDGAEKPSTATRVTGALKMLFIDQAIASPIVNSGFLFAYAAFTGLAGGSGFGAALHSGSAKVQSALWPTLVASWKIWPAANFLNFMFVPLQLRALFLSVVGVAWNLVLSSIAN 211
BLAST of mRNA_H-elongata_contig105773.476.1 vs. uniprot
Match: A0A836CMN9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMN9_9STRA) HSP 1 Score: 132 bits (331), Expect = 8.090e-34 Identity = 82/213 (38.50%), Postives = 116/213 (54.46%), Query Frame = 1
Query: 139 YMRVLDKRPLPTKIVTSGVICAIGDVMAQALSYVNAAIGPVTLGGF--LR-ALEFQRLVIYGLLGAVWVAPVIHYWFDILENLTKGTKAPSNTFSGKMGKALKMVVIDQSIGAPFVNSGFMFLFALATALANGMVATSA-------VRKASSLVRDG-----------IWGTMLVCWKLWPIANLINFAFVPPKLRVLFLNFVGLGWNMYLSA 714
Y+ L +RPLPTK+VTS ++C +GD + Q L T GGF LR AL+F+RLV+Y +G ++VAP D++ P K KAL M ID ++ +P +N GF+++F A LA+G T A ++ ++L+R +W T+L WK+WP+AN NF VPP LRVL+LN VGL W+ LSA
Sbjct: 83 YLATLKRRPLPTKMVTSAIVCGLGDAICQML----------TAGGFGALRHALDFRRLVLYSTMGGLYVAP------DMV---------PGKVTLVKAKKALNMTFID-TLASPLINGGFLYVFTAANCLASGAAVTGAAGAGLEKLQVLANLMRIANLNNIVDKNTCLWPTLLASWKMWPLANFFNFLLVPPHLRVLYLNVVGLVWHTVLSA 269
BLAST of mRNA_H-elongata_contig105773.476.1 vs. uniprot
Match: A0A7S2SVB6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVB6_9STRA) HSP 1 Score: 117 bits (294), Expect = 1.950e-28 Identity = 68/205 (33.17%), Postives = 109/205 (53.17%), Query Frame = 1
Query: 115 AQKGLLSAYMRVLDKRPLPTKIVTSGVICAIGDVMAQALSYVNAAIGPVTLGGFLRALEFQRLVIYGLLGAVWVAPVIHYWFDILENLTKGTKAPSNTFSGKMGKALKMVVIDQSIGAPFVNSGFMFLFALATALANGMV--ATSAVRKASSLVRDGIWGTMLVCWKLWPIANLINFAFVPPKLRVLFLNFVGLGWNMYLSAAVN 723
A L Y R L+KRP+ TK+ T VI AIGD++AQ ++ + P+ R+ Y + +++ P +HYWF+ ++ + K P+ K + L +DQ++G +N GF F FA+ +G + T + + + +W T+L W+LWP+AN +NF FVP K RVLF NFV + W++YLS ++
Sbjct: 71 AGPSLWERYDRQLEKRPIFTKMWTCLVIGAIGDILAQRITTKFVDMDPM------------RIFQYSVAQFLFLGPSLHYWFNFIDYVGK---LPAIAKLKKSVRVLVQTFVDQTVGVVTINGGFFFFFAVLQNTLDGTLFPLTRTLGQGWEKITSLMWVTLLANWRLWPLANWVNFQFVPLKYRVLFSNFVAVFWSIYLSVVMH 260
BLAST of mRNA_H-elongata_contig105773.476.1 vs. uniprot
Match: I7MJ57_TETTS (Mpv17/PMP22 family protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7MJ57_TETTS) HSP 1 Score: 106 bits (264), Expect = 7.330e-25 Identity = 64/195 (32.82%), Postives = 93/195 (47.69%), Query Frame = 1
Query: 127 LLSAYMRVLDKRPLPTKIVTSGVICAIGDVMAQALSYVNAAIGPVTLGGFLRALEFQRLVIYGLLGAVWVAPVIHYWFDILENLTKGTKAPSNTFSGKMGKALKMVVIDQSIGAPFVNSGFMFLFALATALANGMVATSAVRKASSLVRDGIWGTMLVCWKLWPIANLINFAFVPPKLRVLFLNFVGLGWNMYLS 711
+ Y +L K PL TK VTSG + +GD + Q + N +A F+R +G+V+ APV+H W+ L + G++ K L + DQ+I F F F + V ++ K + +++ TM+ WKLWP A +INF+ VP RVLF NFVGL WN+YLS
Sbjct: 3 IFKGYNNLLTKYPLSTKCVTSGFMFGLGDAICQLVFEEN------------KAYNFRRTANIAFVGSVFAAPVLHKWYGFLPGFCERNIFYKYPKMGQISKTLIPMAFDQTI--------FAFSFTCYFFMVVNYVEYQSIEKGITSIKEKSLETMIANWKLWPAAQMINFSIVPIPYRVLFANFVGLIWNIYLS 177
BLAST of mRNA_H-elongata_contig105773.476.1 vs. uniprot
Match: A0A7S1XPH0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPH0_9STRA) HSP 1 Score: 108 bits (269), Expect = 1.660e-24 Identity = 67/218 (30.73%), Postives = 106/218 (48.62%), Query Frame = 1
Query: 61 EIDDHIGDSVSTSLPTPGAQKGLLSAYMRVLDKRPLPTKIVTSGVICAIGDVMAQALSYVNAAIGPVTLGGFLRALEFQRLVIYGLLGAVWVAPVIHYWFDILENLTKGTKAPSNTFSGKMGKALKMVVIDQSIGAPFVNSGFMFLFALATALANGMVATSAVRKASSLVRDGIWGTMLVCWKLWPIANLINFAFVPPKLRVLFLNFVGLGWNMYLSA 714
++ + ++++LP P L Y+R L+ RP+P K+ T+ + I D+++QAL+ P L FL + Q A ++ P +HY F + E + G K G K L MV +DQ++GA F + F +F G + KA + V +W +L WK+WP+AN INF FVP +LR+ F N V + + LS+
Sbjct: 90 KVVSELEPEMTSALPAPSRASRLWRGYVRRLEARPIPMKVATAMCLMCISDLVSQALTP-----APFNLPRFLAFVTTQ---------AFFMTPCLHYQFAMFEAI--GNKVERRF--GTDAKPLAMVAVDQTLGALFAFTAFFLIFTFWDNAFRGFPEGGVLGKAWAKVTGTLWSALLANWKIWPLANFINFKFVPLQLRIPFANLVACCFGIILSS 289
BLAST of mRNA_H-elongata_contig105773.476.1 vs. uniprot
Match: A0A7S4A5T2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A5T2_9STRA) HSP 1 Score: 106 bits (264), Expect = 2.100e-24 Identity = 70/234 (29.91%), Postives = 107/234 (45.73%), Query Frame = 1
Query: 10 RARGGKLWRRPAVAVPVEIDDHIGDSVSTSLPTPGAQKGLLSAYMRVLDKRPLPTKIVTSGVICAIGDVMAQALSYVNAAIGPVTLGGFLRALEFQRLVIYGLLGAVWVAPVIHYWFDILENLTKGTKAPSNTFSGKMGKALKMVVIDQSIGAPFVNSGFMFLFALATALANGMVATSAVRKASSLVRDGIWGTMLVCWKLWPIANLINFAFVPPKLRVLFLNFVGLGWNMYLS 711
R RG L A A + + + S T + G+L AY +L +RPLPTK+ +SG A+GD +AQ + V P +R +++ +G + AP++H W+ L L K A S F+ + L++++ +QSIGA N GF + +A G + AS W M W +WP+ + +N A VP RVLF+N + W LS
Sbjct: 2 RRRGASLLFAAATAAALSPPNRSVKAPSARQATTAVRGGVLRAYDSLLKRRPLPTKMASSGAASALGDALAQTI--VGNTYDP------------RRTLVFAAIGVFYFAPLLHLWYKALHKLEKSGVA-SGRFTRRQIIGLQLLM-NQSIGAMCANGGFFYAYAAFDRWLPGGGNAPILETASKAFHRKFWRIMKANWVVWPLPSFVNLALVPLDYRVLFMNCFAVVWKCVLS 219
BLAST of mRNA_H-elongata_contig105773.476.1 vs. uniprot
Match: A0A8J6CEC6_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CEC6_DIALT) HSP 1 Score: 105 bits (263), Expect = 7.780e-24 Identity = 64/203 (31.53%), Postives = 98/203 (48.28%), Query Frame = 1
Query: 139 YMRVLDKRPLPTKIVTSGVICAIGDVMAQALSYVNAAIGPVTLGGFLRALEFQRLVIYGLLGAVWVAPVIHYWFDILENLTKGTKAPSNTFSGKMGKALKMVVIDQSIGAPFVNSGFMFLFALATALANGMVATSAVRKASSLVRDGIWGTM--------LVCWKLWPIANLINFAFVPPKLRVLFLNFVGLGWNMYLSAAVN 723
Y+ +L+ P+ TK+ TS V+ A+GDV+AQ TL + A +RL++ + + +P +HYW++ + K T+ G AL + +DQ + P GF +FALA A ++ A A + ++ G+ M L WK+W + L+NF FVPP LRV F N V + WN LS N
Sbjct: 86 YLELLEAYPMRTKMATSAVLSAVGDVLAQ------------TLDKSVAAFSLRRLLVLVSVNIFYFSPALHYWYNFFDVAVGKLKLRPGTW----GSALAYLALDQLVNTPLTLLGFFHVFALANAASHA--ALGAPMPGAGVLLAGVRAKMGVEYANALLANWKVWALPQLVNFMFVPPSLRVGFANLVAIVWNAILSMIAN 270 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105773.476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig105773.476.1 >prot_H-elongata_contig105773.476.1 ID=prot_H-elongata_contig105773.476.1|Name=mRNA_H-elongata_contig105773.476.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=242bp MLSRARGGKLWRRPAVAVPVEIDDHIGDSVSTSLPTPGAQKGLLSAYMRVback to top mRNA from alignment at H-elongata_contig105773:193..1270+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig105773.476.1 ID=mRNA_H-elongata_contig105773.476.1|Name=mRNA_H-elongata_contig105773.476.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1078bp|location=Sequence derived from alignment at H-elongata_contig105773:193..1270+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig105773:193..1270+ >mRNA_H-elongata_contig105773.476.1 ID=mRNA_H-elongata_contig105773.476.1|Name=mRNA_H-elongata_contig105773.476.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1452bp|location=Sequence derived from alignment at H-elongata_contig105773:193..1270+ (Himanthalia elongata Himel1 dioecious)back to top |