mRNA_H-elongata_contig100479.48.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100479.48.1
Unique NamemRNA_H-elongata_contig100479.48.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig100479.48.1 vs. uniprot
Match: A0A6H5KID0_9PHAE (Beta_elim_lyase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KID0_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 3.990e-40
Identity = 89/149 (59.73%), Postives = 113/149 (75.84%), Query Frame = 2 
Query:  182 SPSFPGTMKVAGYVRPRLGVTKAAETTSAFEVLGLALRYPTSKIYVRAELLAVGGXXXXXXXARGTSKXXXXTGDSSRPSSFDSADVQELFPNLTKLSDARARRSAADKMDAQFEVQKLRQQLESAMNAGDSGRISAIRQELNSLTVAD 628
            SPS PGT   +G+ RPRLG++K AETT++FE LGLALRYP+S+I+VRAELLA          A G         DSS  SSF+S D+ EL+PNL KL+DA+ RRSA+++MD+QFE+QK+RQQLESAMNAGD  RISA+R+ELNSL +A+
Sbjct:  785 SPSVPGTTMGSGFSRPRLGLSKIAETTNSFEALGLALRYPSSRIFVRAELLA--------PPAEGGEAMGRK--DSSSASSFESRDLAELYPNLMKLTDAKERRSASERMDSQFEMQKIRQQLESAMNAGDDDRISALREELNSLVMAE 923
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100479.48.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KID0_9PHAE3.990e-4059.73Beta_elim_lyase domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100479contigH-elongata_contig100479:385..1779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.5
Seed ortholog evalue1.5e-34
Seed eggNOG ortholog2880.D8LF44
Preferred nameTHA1
KEGG rclassRC00312,RC00372
KEGG koko:K01620
KEGG ReactionR00751,R06171
KEGG Pathwayko00260,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map01100,map01110,map01120,map01130,map01230
GOsGO:0001505,GO:0003674,GO:0003824,GO:0004793,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006544,GO:0006545,GO:0006566,GO:0006567,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008732,GO:0009056,GO:0009058,GO:0009063,GO:0009066,GO:0009068,GO:0009069,GO:0009070,GO:0009987,GO:0016053,GO:0016054,GO:0016829,GO:0016830,GO:0016832,GO:0017144,GO:0019752,GO:0042133,GO:0042136,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046395,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607
EggNOG free text desc.L-allo-threonine aldolase activity
EggNOG OGsCOG2008@1,KOG1368@2759
EC4.1.2.48
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size943
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100479.48.1prot_H-elongata_contig100479.48.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100479 676..1577 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929546.8650935-UTR-H-elongata_contig100479:384..6751622929546.8650935-UTR-H-elongata_contig100479:384..675Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100479 385..675 -
1691679063.683926-UTR-H-elongata_contig100479:384..6751691679063.683926-UTR-H-elongata_contig100479:384..675Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100479 385..675 -
1622929546.9068184-UTR-H-elongata_contig100479:1577..17791622929546.9068184-UTR-H-elongata_contig100479:1577..1779Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100479 1578..1779 -
1691679063.7266066-UTR-H-elongata_contig100479:1577..17791691679063.7266066-UTR-H-elongata_contig100479:1577..1779Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig100479 1578..1779 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929546.8786368-CDS-H-elongata_contig100479:675..7681622929546.8786368-CDS-H-elongata_contig100479:675..768Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100479 676..768 -
1691679063.7016766-CDS-H-elongata_contig100479:675..7681691679063.7016766-CDS-H-elongata_contig100479:675..768Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100479 676..768 -
1622929546.891812-CDS-H-elongata_contig100479:1220..15771622929546.891812-CDS-H-elongata_contig100479:1220..1577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100479 1221..1577 -
1691679063.7180078-CDS-H-elongata_contig100479:1220..15771691679063.7180078-CDS-H-elongata_contig100479:1220..1577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100479 1221..1577 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100479.48.1

>prot_H-elongata_contig100479.48.1 ID=prot_H-elongata_contig100479.48.1|Name=mRNA_H-elongata_contig100479.48.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp
MKVAGYVRPRLGVTKAAETTSAFEVLGLALRYPTSKIYVRAELLAVGGGG
GGSGSARGTSKGGGGTGDSSRPSSFDSADVQELFPNLTKLSDARARRSAA
DKMDAQFEVQKLRQQLESAMNAGDSGRISAIRQELNSLTVADKNSAAVH*
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mRNA from alignment at H-elongata_contig100479:385..1779-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100479.48.1 ID=mRNA_H-elongata_contig100479.48.1|Name=mRNA_H-elongata_contig100479.48.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1395bp|location=Sequence derived from alignment at H-elongata_contig100479:385..1779- (Himanthalia elongata Himel1 dioecious)
TGCCGCGAACGCCATCGCCTTCCCCGCGGTAACGCCTGCCCAGGTGCCAG
TGTCCTCGCTCGAGACCGCTCCCGCCGAGGCCGTGACCGACAACGTAGCG
GTGACCTCGGCAGAAAAATTAACCCCAGGCCTGAGCGGAGCCGCCGATAG
GGTAGGTGAGATCCCGCACGAGGTCGTTGACTCGCCGTCGTTTCCGGGGA
CAATGAAGGTCGCCGGGTACGTGCGGCCGAGGCTCGGGGTTACGAAGGCC
GCGGAGACCACCAGTGCGTTCGAGGTGCTAGGGCTGGCGCTGAGATACCC
GACTTCGAAGATCTACGTCCGCGCGGAGCTGCTGGCGGTTGGAGGCGGCG
GCGGGGGTAGTGGTTCGGCGCGAGGCACTTCCAAGGGAGGTGGCGGAACG
GGGGATTCTTCTCGTCCGTCGAGCTTCGACTCTGCCGACGTGCAGGAGCT
GTTCCCGAATCTAACGAAACTGTCCGATGCGAGGGCGAGGAGGTCGGCGG
CAGACAAGATGGACGCCCAGTTCGAGGTGCAGAAATTGAGGCAGCAGCTG
GAGAGCGCGGTGAGAGGCGGGCGGTCTGGTTTTGATCACGTTTTCTATCG
TTGTTGGAGTTGACTTGTTGGGTGGACGAGAAGATCGCGTGGCAGCCTAT
CGAATAGCACCGAAGCGTGCTAAGTCAATCATCTTACCGTTTGCGGAGAA
GACGAGTGCCGAGGTGTGTCGCAACTCCATGCTGCGCAGTGGTGACGTCT
TGGGTTGACGACCGGTGCGCTCAAAGCGAGAAACAGCAGCACTAGCTATT
TTTTGTCGGAAAATGTGTCCCTTCGTGATGACGGCCAGTGGTACACCTTC
ACGAACGAACCAATCCTTACCATTCGTAGTGGAAGCGAAAATATGCGGAT
CGAAAGCGGTCCGATCGAACTGGTTCACCGCGTGCTGTTCTGTTAAATTG
CGGGCGTGGTTTATCCCTCCTCCCCCTTCTCCATGTCGGTCGGTCGGTTG
TGCGAGGACAGATGAACGCCGGAGACTCGGGCCGTATATCCGCCATCCGC
CAAGAGCTGAACTCGTTGACAGTCGCGGATAAGAACTCTGCCGCAGTGCA
CTGACCGCAGCGAAATATATATATATATATATATATAGTAGTAGTATGCG
CGCGATCATCATGCGTGTGGGGAGGTCGTTCGAATGCGCGCGCCGCACTC
ATCATCGGGGTCAAACGTTTTGCGAGCGCGGAATATTAGTACGCGACGTG
ACGATTGCGTCGGGTTGGGCGCGGAGGCGGCATGGGGGAAAAGAGCGCCC
TCTGATGCGACATGCTTTTTGTGTAAATGGGCTTCGTTAGGGCGACGGGC
GCGCGCGCATATGCTCGACGCAAGATATCGAGGCTTAGGTACTTT
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Coding sequence (CDS) from alignment at H-elongata_contig100479:385..1779-

>mRNA_H-elongata_contig100479.48.1 ID=mRNA_H-elongata_contig100479.48.1|Name=mRNA_H-elongata_contig100479.48.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig100479:385..1779- (Himanthalia elongata Himel1 dioecious)
ATGAAGGTCGCCGGGTACGTGCGGCCGAGGCTCGGGGTTACGAAGGCCGC
GGAGACCACCAGTGCGTTCGAGGTGCTAGGGCTGGCGCTGAGATACCCGA
CTTCGAAGATCTACGTCCGCGCGGAGCTGCTGGCGGTTGGAGGCGGCGGC
GGGGGTAGTGGTTCGGCGCGAGGCACTTCCAAGGGAGGTGGCGGAACGGG
GGATTCTTCTCGTCCGTCGAGCTTCGACTCTGCCGACGTGCAGGAGCTGT
TCCCGAATCTAACGAAACTGTCCGATGCGAGGGCGAGGAGGTCGGCGGCA
GACAAGATGGACGCCCAGTTCGAGGTGCAGAAATTGAGGCAGCAGCTGGA
GAGCGCGATGAAGGTCGCCGGGTACGTGCGGCCGAGGCTCGGGGTTACGA
AGGCCGCGGAGACCACCAGTGCGTTCGAGGTGCTAGGGCTGGCGCTGAGA
TACCCGACTTCGAAGATCTACGTCCGCGCGGAGCTGCTGGCGGTTGGAGG
CGGCGGCGGGGGTAGTGGTTCGGCGCGAGGCACTTCCAAGGGAGGTGGCG
GAACGGGGGATTCTTCTCGTCCGTCGAGCTTCGACTCTGCCGACGTGCAG
GAGCTGTTCCCGAATCTAACGAAACTGTCCGATGCGAGGGCGAGGAGGTC
GGCGGCAGACAAGATGGACGCCCAGTTCGAGGTGCAGAAATTGAGGCAGC
AGCTGGAGAGCGCGATGAACGCCGGAGACTCGGGCCGTATATCCGCCATC
CGCCAAGAGCTGAACTCGTTGACAGTCGCGGATAAGAACTCTGCCGCAGT
GCACTGAATGAACGCCGGAGACTCGGGCCGTATATCCGCCATCCGCCAAG
AGCTGAACTCGTTGACAGTCGCGGATAAGAACTCTGCCGCAGTGCACTGA
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