mRNA_H-elongata_contig179092.4738.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig179092.4738.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 207 bits (527), Expect = 3.260e-67 Identity = 108/123 (87.80%), Postives = 117/123 (95.12%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKAKSRSSKAGLRFPVGRIGRFLKTGKYSQRVGTGAPVYLAAVMEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK 369
M+GKGKGGRG KK+ +RS+KAGL+FPVGR+GRFLK GKY+ RVG GAPVYLAAV+EYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VKK
Sbjct: 1 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
BLAST of mRNA_H-elongata_contig179092.4738.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 205 bits (522), Expect = 1.100e-65 Identity = 107/122 (87.70%), Postives = 116/122 (95.08%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKAKSRSSKAGLRFPVGRIGRFLKTGKYSQRVGTGAPVYLAAVMEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 366
M+GKGKGGRG KK+ +RS+KAGL+FPVGR+GRFLK GKY+ RVG GAPVYLAAV+EYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VK
Sbjct: 46 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166
BLAST of mRNA_H-elongata_contig179092.4738.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 200 bits (508), Expect = 3.920e-64 Identity = 105/119 (88.24%), Postives = 113/119 (94.96%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKAKSRSSKAGLRFPVGRIGRFLKTGKYSQRVGTGAPVYLAAVMEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 357
M+GKGKGGRG KK+ S+SSKAGL+FPV RIGR+LK GKY+ RVG GAPVYLAAV+EYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRG-KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_H-elongata_contig179092.4738.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA) HSP 1 Score: 200 bits (508), Expect = 4.610e-64 Identity = 101/121 (83.47%), Postives = 114/121 (94.21%), Query Frame = 1
Query: 7 GKGKGGRGDKKAKSRSSKAGLRFPVGRIGRFLKTGKYSQRVGTGAPVYLAAVMEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK 369
GKGKGGRGDKKA S+S+KAGL+FPVGR+GRFLK G+Y++RVG GAPVY+AAVMEYL AEVLEL+GNAARDNKK+RI+PRHIQLAVRNDEELNKLLG+VTIA+GGVLPNIHAVLLPKK K
Sbjct: 5 GKGKGGRGDKKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSK 125
BLAST of mRNA_H-elongata_contig179092.4738.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI) HSP 1 Score: 198 bits (504), Expect = 9.500e-64 Identity = 104/119 (87.39%), Postives = 112/119 (94.12%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKAKSRSSKAGLRFPVGRIGRFLKTGKYSQRVGTGAPVYLAAVMEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 357
M+GKGKGGRG KK SRS+KAGL+FPVGRIGRF+K GKYS RVG GAPVY+AAV+EYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRG-KKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_H-elongata_contig179092.4738.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 200 bits (508), Expect = 1.990e-63 Identity = 105/119 (88.24%), Postives = 113/119 (94.96%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKAKSRSSKAGLRFPVGRIGRFLKTGKYSQRVGTGAPVYLAAVMEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 357
M+GKGKGGRG KK+ S+SSKAGL+FPV RIGR+LK GKY+ RVG GAPVYLAAV+EYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 52 MSGKGKGGRG-KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169
BLAST of mRNA_H-elongata_contig179092.4738.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA) HSP 1 Score: 194 bits (492), Expect = 8.850e-62 Identity = 101/121 (83.47%), Postives = 111/121 (91.74%), Query Frame = 1
Query: 1 MTGKGKGGRGD--KKAKSRSSKAGLRFPVGRIGRFLKTGKYSQRVGTGAPVYLAAVMEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 357
M GKGKGGRG KK+ S+SSKAGL+FPV R+GRFLK G+Y++RVG GAPVYLAAV+EYL AE+LELAGNAARDNKK+RIVPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK
Sbjct: 1 MAGKGKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKK 121
BLAST of mRNA_H-elongata_contig179092.4738.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA) HSP 1 Score: 192 bits (487), Expect = 4.080e-61 Identity = 96/119 (80.67%), Postives = 111/119 (93.28%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKAKSRSSKAGLRFPVGRIGRFLKTGKYSQRVGTGAPVYLAAVMEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 357
M+GKGKGGRG+KK+ + S+KAGL+FPVGRIGR+L+ GKY+ R+G GAPVYLAAV+EYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHA+LLPKK
Sbjct: 1 MSGKGKGGRGEKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKK 119
BLAST of mRNA_H-elongata_contig179092.4738.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA) HSP 1 Score: 192 bits (487), Expect = 4.080e-61 Identity = 98/122 (80.33%), Postives = 111/122 (90.98%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKAKSRSSKAGLRFPVGRIGRFLKTGKYSQRVGTGAPVYLAAVMEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 366
M+GKGKGGRG KK+ + S+KAGL+FPVGRIGR+L+ GKY+ R+G GAPVYLAAV+EYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK K
Sbjct: 1 MSGKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122
BLAST of mRNA_H-elongata_contig179092.4738.1 vs. uniprot
Match: H2A_CHLRE (Histone H2A n=45 Tax=Chlamydomonadales TaxID=3042 RepID=H2A_CHLRE) HSP 1 Score: 192 bits (487), Expect = 5.120e-61 Identity = 99/119 (83.19%), Postives = 108/119 (90.76%), Query Frame = 1
Query: 1 MTGKGKGGRGDKKAKSRSSKAGLRFPVGRIGRFLKTGKYSQRVGTGAPVYLAAVMEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 357
M G+GKG KKA SRS+KAGL+FPVGRI R+LK GKY++R+G GAPVYLAAV+EYLTAEVLELAGNAARDNKK RIVPRHIQLA+RNDEEL KLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 1 MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKK 119 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179092.4738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig179092.4738.1 >prot_H-elongata_contig179092.4738.1 ID=prot_H-elongata_contig179092.4738.1|Name=mRNA_H-elongata_contig179092.4738.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp MTGKGKGGRGDKKAKSRSSKAGLRFPVGRIGRFLKTGKYSQRVGTGAPVYback to top mRNA from alignment at H-elongata_contig179092:734..1105+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig179092.4738.1 ID=mRNA_H-elongata_contig179092.4738.1|Name=mRNA_H-elongata_contig179092.4738.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=372bp|location=Sequence derived from alignment at H-elongata_contig179092:734..1105+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig179092:734..1105+ >mRNA_H-elongata_contig179092.4738.1 ID=mRNA_H-elongata_contig179092.4738.1|Name=mRNA_H-elongata_contig179092.4738.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig179092:734..1105+ (Himanthalia elongata Himel1 dioecious)back to top |