mRNA_H-elongata_contig17882.4726.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17882.4726.1
Unique NamemRNA_H-elongata_contig17882.4726.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17882.4726.1 vs. uniprot
Match: D8LLK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK2_ECTSI)

HSP 1 Score: 242 bits (617), Expect = 2.470e-62
Identity = 175/378 (46.30%), Postives = 204/378 (53.97%), Query Frame = 3 
Query:  117 VGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRTSMSIRFFPQVFFMYFTLFHVYFFSFPFGFSYLALVTTVLFLQHSMLFFWNTYEVPALRAGAVSSTHPRQAGMVIGVVPRYDPHGMGLPMVPPRPPLEQGRPRAATVDG-EPSHSRGSIPAAQVAARRLIPRRNSSPDPSSPS--LGXXXXXXXXXGNNRPLVRDAVVHPTSPVMDTSAPRGNELRQSSGAVSTFERNPPPPLPGIELLAREWESGETASGGGXXXXXXXXXHSDSFGDYNRGNISAPLLGAFPFSIWNLIQFSSSPTTSGGHISAGGGLRPTIDTSWQHREVGIGPTAPPSGGGFGVTGSETGVRTEGRECTA-----GLVALTESGRGIE 1226
            VGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRT++ IRFFPQVFF+YFTLFH+YFFSFPFGFSYLALVTTVLFLQHSMLF WN YEVPALRAG VS++ PRQAGMVIGVVP     G  +P          GR RAAT    E       +PAA + A R+I RRNSSPDP+SPS  LG                                PR  ++R +S          P P          W      SGGG         H+       R ++SAPLLG+FPFS W ++Q S    T  G  + G     T    +          A P     G +G+ET   ++  E T      G+    E+ RG+E
Sbjct:  520 VGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRTAVCIRFFPQVFFLYFTLFHIYFFSFPFGFSYLALVTTVLFLQHSMLFCWNRYEVPALRAGVVSASRPRQAGMVIGVVPSGG--GGDVPAT--------GRQRAATASSLEQPREESILPAAALDAGRVISRRNSSPDPTSPSPPLGSNSSGSARGDGVAAATXXXXXXXXXXXXXXXXPRA-DVRATSPVARRAAAGWPVPS--------GWVGDR--SGGGDGRSDVLARHT------RRHSVSAPLLGSFPFSFWRVLQTS----TVDGQAAVGAAAATTTGIGYARTAA-----ADPVQRRHGGSGTETSGDSDSAEATGSGGEDGVDIRRETDRGVE 861
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BLAST of mRNA_H-elongata_contig17882.4726.1 vs. uniprot
Match: A0A6H5K094_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K094_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 5.260e-62
Identity = 127/148 (85.81%), Postives = 133/148 (89.86%), Query Frame = 3 
Query:    3 ERMLKFTFLLQHHVRHRLPYAPLIFTHVVESLVFVPIMVGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRTSMSIRFFPQVFFMYFTLFHVYFFSFPFGFSYLALVTTVLFLQHSMLFFWNTYEVPALRAGAVSSTHPRQAGMV 446
            ERMLKFTFLLQHHVRHRLPYAPLIFTHVVESLVFVPIMVGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRT++ IRFFPQVFF+YFTLFHVYFFSFPFGFSYLALVTTVLFLQHSMLF WN YE     +G  +    +QAG V
Sbjct:  528 ERMLKFTFLLQHHVRHRLPYAPLIFTHVVESLVFVPIMVGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRTAVCIRFFPQVFFLYFTLFHVYFFSFPFGFSYLALVTTVLFLQHSMLFCWNRYEA----SGGTAVVQRQQAGTV 671
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BLAST of mRNA_H-elongata_contig17882.4726.1 vs. uniprot
Match: A0A835Z245_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z245_9STRA)

HSP 1 Score: 212 bits (539), Expect = 2.450e-57
Identity = 111/126 (88.10%), Postives = 120/126 (95.24%), Query Frame = 3 
Query:    3 ERMLKFTFLLQHHVRHRLPYAPLIFTHVVESLVFVPIMVGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRTSMSIRFFPQVFFMYFTLFHVYFFSFPFGFSYLALVTTVLFLQHSMLFFWNT 380
            ERML+FTFLLQHH+R+R PYAPLIFTHVVESLVFVPIMVGILFFLFEFFSDQLLAFMVLSVVW+CEVYSV+SVRTS SIRFFP+V   YF LFHVYFFSFPFGFSYLALV+TVLFLQHSML+FWN+
Sbjct:  214 ERMLRFTFLLQHHIRNRQPYAPLIFTHVVESLVFVPIMVGILFFLFEFFSDQLLAFMVLSVVWMCEVYSVISVRTSTSIRFFPRVVSFYFALFHVYFFSFPFGFSYLALVSTVLFLQHSMLYFWNS 339
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BLAST of mRNA_H-elongata_contig17882.4726.1 vs. uniprot
Match: A0A7S1U341_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U341_9STRA)

HSP 1 Score: 204 bits (520), Expect = 1.900e-53
Identity = 109/163 (66.87%), Postives = 128/163 (78.53%), Query Frame = 3 
Query:    3 ERMLKFTFLLQHHVRHRLPYAPLIFTHVVESLVFVPIMVGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRTSMSIRFFPQVFFMYFTLFHVYFFSFPFGFSYLALVTTVLFLQHSMLFFWNTYEVPALRAGAVSSTHPRQAGMVIGVVPRYDPHGMGLP 491
            ERML+FT+ LQHHVR+ LPY PL+FTHVVESLVFVPIMVGILFFLFEFFSDQLLAF+VLSVVWLCEVYSVV+VRTS+S RFFP++FF+Y +LFH+YFFSFP+GFSYLAL   V FL H++   WN +EVPAL  G ++   PR        +P Y  H    P
Sbjct:  304 ERMLRFTYHLQHHVRNDLPYGPLVFTHVVESLVFVPIMVGILFFLFEFFSDQLLAFLVLSVVWLCEVYSVVAVRTSLSTRFFPRIFFLYLSLFHIYFFSFPYGFSYLALAACVAFLFHAVTVSWNRWEVPALLNGQITIDRPRSE------IPWYGQHAPARP 460
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BLAST of mRNA_H-elongata_contig17882.4726.1 vs. uniprot
Match: A0A7S2F3B4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F3B4_9STRA)

HSP 1 Score: 193 bits (491), Expect = 4.670e-53
Identity = 99/136 (72.79%), Postives = 117/136 (86.03%), Query Frame = 3 
Query:   42 VRHRLPYAPLIFTHVVESLVFVPIMVGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRTSMSIRFFPQVFFMYFTLFHVYFFSFPFGFSYLALVTTVLFLQHSMLFFWNTYEVPALRAGAVSSTHPRQAGMVI 449
            VRHRL Y  LI TH+VESLV+VPIMVGILFFLFEFFSDQLLAFMVLS+VW+CEVYSV+SVRT +SIRFFP++FF+Y TLFHVYFFSFP GFS+LAL+TT   L H+ML+FWN +EVPALR G ++   PRQA + +
Sbjct:    1 VRHRLSYVALIVTHLVESLVYVPIMVGILFFLFEFFSDQLLAFMVLSLVWICEVYSVISVRTMLSIRFFPRIFFLYLTLFHVYFFSFPMGFSHLALLTTFCLLLHAMLYFWNRFEVPALRCGDITMLRPRQADIPV 136
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BLAST of mRNA_H-elongata_contig17882.4726.1 vs. uniprot
Match: A0A7S2SU34_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU34_9STRA)

HSP 1 Score: 198 bits (503), Expect = 1.690e-52
Identity = 100/143 (69.93%), Postives = 122/143 (85.31%), Query Frame = 3 
Query:    3 ERMLKFTFLLQHHVRHRLPYAPLIFTHVVESLVFVPIMVGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRTSMSIRFFPQVFFMYFTLFHVYFFSFPFGFSYLALVTTVLFLQHSMLFFWNTYEVPALRAGAVSSTHPR 431
            ERMLKFT +LQHHVRHR+ Y  LI +H+V+SLV+VP+MVGILFFLFEFFSDQLLAFMVLSVVW+CEVYSV+SVRT+ SI+ FP++F +YFTLFHVYFFS+PF FS+LAL++TV  L H MLFFW+ +EVP  + G +S   PR
Sbjct:  138 ERMLKFTLILQHHVRHRMSYVALIISHLVDSLVYVPLMVGILFFLFEFFSDQLLAFMVLSVVWICEVYSVISVRTTESIQLFPRLFLLYFTLFHVYFFSYPFAFSHLALLSTVTLLCHGMLFFWDRFEVPGYQDGTISQNRPR 280
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BLAST of mRNA_H-elongata_contig17882.4726.1 vs. uniprot
Match: A0A1W0A6K2_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6K2_9STRA)

HSP 1 Score: 199 bits (505), Expect = 2.880e-52
Identity = 99/152 (65.13%), Postives = 127/152 (83.55%), Query Frame = 3 
Query:    3 ERMLKFTFLLQHHVRHRLPYAPLIFTHVVESLVFVPIMVGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRTSMSIRFFPQVFFMYFTLFHVYFFSFPFGFSYLALVTTVLFLQHSMLFFWNTYEVPALRAGAVSSTHPRQAGMVIGVV 458
            +RMLKFT LLQHH+R+RLPY  L+F+H++ESLVFVPIMVG+LFFLFEFF DQLLAF+V+S+VWLCE+YSVV VRT +S+ FFP +F MYF++FHVYFF FPFGFSY AL TT++FL H+ML F N +E+PAL  G +++  PRQ  +  G++
Sbjct:  235 QRMLKFTILLQHHIRYRLPYMKLVFSHIIESLVFVPIMVGMLFFLFEFFKDQLLAFIVMSLVWLCELYSVVCVRTWLSLTFFPPLFLMYFSMFHVYFFCFPFGFSYTALWTTIIFLLHTMLLFLNRFEIPALNEGLITAQTPRQFVLSPGII 386
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BLAST of mRNA_H-elongata_contig17882.4726.1 vs. uniprot
Match: A0A024U8M7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U8M7_9STRA)

HSP 1 Score: 195 bits (495), Expect = 5.460e-51
Identity = 99/144 (68.75%), Postives = 119/144 (82.64%), Query Frame = 3 
Query:    3 ERMLKFTFLLQHHVRHRLPYAPLIFTHVVESLVFVPIMVGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRTSMSIRFFPQVFFMYFTLFHVYFFSFPFGFSYLALVTTVLFLQHSMLFFWNTYEVPALRAGAVSSTHPRQ 434
            +RML+FT  LQHH+RHR+PY  L+F+H++ESLVFVPIMVG+LFFLFEFF D+LLAFM++SVVWLCE+YSV+ VRT +S+ FFP VF   F LFHVYFFSFPFGFSY+AL TT  FL   MLFF N +E+PALR G VS+  PRQ
Sbjct:  240 QRMLRFTLSLQHHIRHRMPYLKLVFSHIIESLVFVPIMVGMLFFLFEFFKDRLLAFMIMSVVWLCELYSVICVRTCLSLTFFPPVFLSLFALFHVYFFSFPFGFSYVALWTTTAFLAQQMLFFLNRFELPALRDGVVSAQWPRQ 383
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BLAST of mRNA_H-elongata_contig17882.4726.1 vs. uniprot
Match: W4GVL1_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GVL1_9STRA)

HSP 1 Score: 195 bits (496), Expect = 7.830e-51
Identity = 100/144 (69.44%), Postives = 119/144 (82.64%), Query Frame = 3 
Query:    3 ERMLKFTFLLQHHVRHRLPYAPLIFTHVVESLVFVPIMVGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRTSMSIRFFPQVFFMYFTLFHVYFFSFPFGFSYLALVTTVLFLQHSMLFFWNTYEVPALRAGAVSSTHPRQ 434
            +RML+FT  LQHH+RHR+PY  L+F+H++ESLVFVPIMVG+LFFLFEFF D+LLAFMV+SVVWLCE+YSV+ VRT +S+ FFP VF   F LFHVYFF FPFGFSY+AL TTV FL H ML F N +E+PALR G VS+  PRQ
Sbjct:  252 QRMLRFTLSLQHHIRHRMPYIKLVFSHIIESLVFVPIMVGMLFFLFEFFKDRLLAFMVMSVVWLCELYSVICVRTWLSLTFFPPVFLSLFALFHVYFFCFPFGFSYVALWTTVAFLSHQMLLFLNRFELPALRDGVVSAQWPRQ 395
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BLAST of mRNA_H-elongata_contig17882.4726.1 vs. uniprot
Match: A0A1V9YDG0_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YDG0_9STRA)

HSP 1 Score: 193 bits (490), Expect = 2.090e-50
Identity = 97/144 (67.36%), Postives = 120/144 (83.33%), Query Frame = 3 
Query:    3 ERMLKFTFLLQHHVRHRLPYAPLIFTHVVESLVFVPIMVGILFFLFEFFSDQLLAFMVLSVVWLCEVYSVVSVRTSMSIRFFPQVFFMYFTLFHVYFFSFPFGFSYLALVTTVLFLQHSMLFFWNTYEVPALRAGAVSSTHPRQ 434
            +RMLKFT LLQHH+RHRLPY  L+ +H++ESLVFVPIMVG+LFFLFEFF DQLLAF+V+S+ WLCE+YSVV VRT +S+ FFP +F +YF++FHVYFF FPFGFSY AL TT++ L H+ML F N +E+PAL  G VS+  PRQ
Sbjct:  235 QRMLKFTILLQHHIRHRLPYMKLVLSHIIESLVFVPIMVGMLFFLFEFFKDQLLAFIVMSLAWLCELYSVVCVRTWLSLTFFPPLFLLYFSMFHVYFFCFPFGFSYTALWTTIVLLVHTMLLFLNRFEIPALHDGLVSAQTPRQ 378
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17882.4726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLK2_ECTSI2.470e-6246.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K094_9PHAE5.260e-6285.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z245_9STRA2.450e-5788.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1U341_9STRA1.900e-5366.87Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2F3B4_9STRA4.670e-5372.79Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2SU34_9STRA1.690e-5269.93Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1W0A6K2_9STRA2.880e-5265.13Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A024U8M7_9STRA5.460e-5168.75Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
W4GVL1_9STRA7.830e-5169.44Uncharacterized protein n=7 Tax=Aphanomyces astaci... [more]
A0A1V9YDG0_9STRA2.090e-5067.36Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17882contigH-elongata_contig17882:1423..6810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score241.9
Seed ortholog evalue7e-61
Seed eggNOG ortholog2880.D8LLK2
Preferred nameTMEM259
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0008150,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0010941,GO:0012505,GO:0019222,GO:0030162,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0032268,GO:0032270,GO:0033554,GO:0034976,GO:0042176,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045732,GO:0045862,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0060255,GO:0060548,GO:0061136,GO:0065007,GO:0080090,GO:0080134,GO:0080135,GO:1901214,GO:1901215,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904292,GO:1904294,GO:1905897,GO:1905898
EggNOG free text desc.positive regulation of ERAD pathway
EggNOG OGsKOG2092@1,KOG2092@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionMembralin
Ec32 orthologEc-04_005490.1
Exons5
Model size3085
Cds size1635
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930032.222543-UTR-H-elongata_contig17882:1422..28641622930032.222543-UTR-H-elongata_contig17882:1422..2864Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17882 1423..2864 -
1691679254.2357378-UTR-H-elongata_contig17882:1422..28641691679254.2357378-UTR-H-elongata_contig17882:1422..2864Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17882 1423..2864 -
1622930032.3412104-UTR-H-elongata_contig17882:6802..68101622930032.3412104-UTR-H-elongata_contig17882:6802..6810Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17882 6803..6810 -
1691679254.299365-UTR-H-elongata_contig17882:6802..68101691679254.299365-UTR-H-elongata_contig17882:6802..6810Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17882 6803..6810 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930032.2477703-CDS-H-elongata_contig17882:2864..39351622930032.2477703-CDS-H-elongata_contig17882:2864..3935Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17882 2865..3935 -
1691679254.2452514-CDS-H-elongata_contig17882:2864..39351691679254.2452514-CDS-H-elongata_contig17882:2864..3935Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17882 2865..3935 -
1622930032.2714744-CDS-H-elongata_contig17882:4201..43871622930032.2714744-CDS-H-elongata_contig17882:4201..4387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17882 4202..4387 -
1691679254.252821-CDS-H-elongata_contig17882:4201..43871691679254.252821-CDS-H-elongata_contig17882:4201..4387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17882 4202..4387 -
1622930032.2960474-CDS-H-elongata_contig17882:4976..51081622930032.2960474-CDS-H-elongata_contig17882:4976..5108Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17882 4977..5108 -
1691679254.2669332-CDS-H-elongata_contig17882:4976..51081691679254.2669332-CDS-H-elongata_contig17882:4976..5108Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17882 4977..5108 -
1622930032.3149176-CDS-H-elongata_contig17882:5586..57241622930032.3149176-CDS-H-elongata_contig17882:5586..5724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17882 5587..5724 -
1691679254.2788482-CDS-H-elongata_contig17882:5586..57241691679254.2788482-CDS-H-elongata_contig17882:5586..5724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17882 5587..5724 -
1622930032.3296423-CDS-H-elongata_contig17882:6694..68021622930032.3296423-CDS-H-elongata_contig17882:6694..6802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17882 6695..6802 -
1691679254.290458-CDS-H-elongata_contig17882:6694..68021691679254.290458-CDS-H-elongata_contig17882:6694..6802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17882 6695..6802 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17882.4726.1prot_H-elongata_contig17882.4726.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17882 2865..6802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17882.4726.1

>prot_H-elongata_contig17882.4726.1 ID=prot_H-elongata_contig17882.4726.1|Name=mRNA_H-elongata_contig17882.4726.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=545bp
MLKFTFLLQHHVRHRLPYAPLIFTHVVESLVFVPIMVGILFFLFEFFSDQ
LLAFMVLSVVWLCEVYSVVSVRTSMSIRFFPQVFFMYFTLFHVYFFSFPF
GFSYLALVTTVLFLQHSMLFFWNTYEVPALRAGAVSSTHPRQAGMVIGVV
PRYDPHGMGLPMVPPRPPLEQGRPRAATVDGEPSHSRGSIPAAQVAARRL
IPRRNSSPDPSSPSLGGGSGGGGGDGNNRPLVRDAVVHPTSPVMDTSAPR
GNELRQSSGAVSTFERNPPPPLPGIELLAREWESGETASGGGEGGGRDGG
GHSDSFGDYNRGNISAPLLGAFPFSIWNLIQFSSSPTTSGGHISAGGGLR
PTIDTSWQHREVGIGPTAPPSGGGFGVTGSETGVRTEGRECTAGLVALTE
SGRGIERMCPTSPTAESALGVHPEVDAPPAAVARSVATIHSRSCKVGISG
VEREQERTARWRPDSVVVGEREGGSGGGGDGDSGNNAAERLGSGGAASAD
EAPPPQSLVGDEVGREEPSQETEILRRERLSLGGTQYRGMYDDG*
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mRNA from alignment at H-elongata_contig17882:1423..6810-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17882.4726.1 ID=mRNA_H-elongata_contig17882.4726.1|Name=mRNA_H-elongata_contig17882.4726.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5388bp|location=Sequence derived from alignment at H-elongata_contig17882:1423..6810- (Himanthalia elongata Himel1 dioecious)
AGGAGCGCATGCTGAAGTTCACGTTCCTGCTCCAGCACCATGTACGGCAC
CGCCTACCCTACGCGCCGCTGATCTTCACGCACGTCGTCGAGTCCCTCGT
GTTCGTCCCTATCATGGTAAAACAAACAAACAAAAGTATATCTGCTTTTG
TATGCCTTGGAGTCGAGCGTGTGTTGTCTACGTTGTGTAAAAACAAAATA
AAAACAAAAAACACACACACACACAAGCGTGTCGTACCGCTATCGAATTA
TCACAGACTCGGGTAGGAAACCAAGAGTTCATAGGGTTGTGTCATTGGAG
AGCGTGTCGGGTTACTGGAGACAAGATGAGCTCTGCAGAGGAGCACGGGT
TTCCCCGCGATATATCTATCTATCTATGTAACTGTTACGAATGTATGTAT
TGTATCTTAAGTAGTTTGCGTACCGGTGTAAATGTGAAAAAAAAAAAGTT
TGTTTATTGGTTTGTTTTGGTTGTGCACGCGTCTCTTCATGTAGTTTGTG
TCCCAATATGTGTCGATTATGTAGAGTGCGTATGTTCGCCTTTGTGTTAA
TATATGCGTGATGTGTTCTAGATGTTCATGTATATATGTGTTAATGTGAG
TGAGTGTCTCTCTCTCTCGGCCTCCGTATCTTTTTCTCTCTTTCTCTTTT
GTCTTGTGTGTCTGGGTCTCTATAGTGTTGCGTTACTTTTGAGGGGCGGG
TCTTCTTGTGCCCCCTTGCGTGATCATCACATATTGACGGCTACTGACTG
TGCGCGCGTATGCTTTCCTTGGCCGCCGTACGTCACTCGACCTGAAGTAA
GGCAACCGCCATTCCGACCCACAAACAGAGAGCTATGGTTAGCAACAGCT
ACAACAAACCGGCCGTCTGCGAACCTGCCACTTGGGGTAGGGGGAAGGAG
TCATTGGAAACTGCGAAATCCCACTCGATGCCACGCGCAACCTCTCTCGC
ACCGCGGATTAGGAAAGGTTTAAGGTGTTTTATTGCTAACGTGCGACGAA
AACCCTGTTGACACCTATCAAACCTCGCCCCATGTGCACTCTTTGAAAAT
GAGTTTTGTTTTCTCTACTATCTCTCTCCACCCCAGGTGGGCATCTTGTT
TTTCCTGTTCGAGTTTTTTTCGGACCAGCTCCTGGCCTTCATGGTGCTGT
CTGTAGTGTGGCTTTGCGAGGTGTATTCGGTCGTCAGCGTCCGCACCTCC
ATGTCCATCCGTTTTTTCCCCCAGGTGGGTGGGTGGGTGGGTGTTGATAT
AGCCTTTGCTTTATGAGTAGGGCGGTAATACGCACCCGCCCTTCTTCTCG
GGAAAGGATGTGCTGGAGTTCGATCGTCACCGACGTCAACAGTCCTCCTG
AGTTGGCTTGTTGTTTGTTTATGTTTGTGTTTTAGCTGTTTTTCGGTATC
GTCGCCCCCCGCCAACGGGCGAGAACCCGTTGACTCTAATCCAAATCCCT
CCTTCCGTTCTAACTCCCGAGGATGCATGGTCAATGTTCTAGCAGCTAAG
GCATTCAAAACTTTATTAACTTCCTCTCTCTCTCTCTCTCTCTCTCTCCG
CCCTAGCTTACGCCACTTACCACTTGAGACTAAGCCGTGATATGGCATGC
ATAACATGGATAATGTTCGACGTCTTGAAACAGCTCGCTCGGTCCTTGTC
CTTCCACCCACGTCGTCGTTGTTGTCTTTGTCATCGTCTTCGCGGCACAC
AGGTATTCTTCATGTACTTTACGCTGTTTCATGTGTACTTCTTCTCCTTT
CCCTTCGGGTTCAGCTACCTTGCTCTCGTGACCACCGTGCTCTTTCTGCA
GCACTCCATGCTCTTCTTCTGGAACACCTACGAGGCAAGCCTACCCCACC
CCCCGCTCGTACGGGCTCCTTAGGCTAGGGGCAGGGGTGGGAGAAAGTGT
TTCATGCTTGACTGTCGGGTCTTTGTGTCGGGTGCATTTTTGCGTCGTAG
ACTCGGCCCACGTGGGGACCCAAGCGGGAGGCTAACGGAATCTCCCACGA
AGATATTGGTTGAAGTGCATTCCTCATTCGAACCCTCCCCCCAATAATGG
AATGCTGCAATGGAATAATCGAAAATACACTCAGGCGGTTTTGTGTGGCT
TCACCTCCCCCCCCCCCCCCCCCCACCACACCCCCCACCCCACCCACACC
CACCCCCACCCCCCCACACCCCCCCCCCACCCCACCCCCCCNNNNNNNNN
NCTCCTTCGGACCCCCCCCCCAATAATGGGATGGCTCCAGTGAATAAGCG
AAAAAGCACCCAGGCGGGTTTTTGTGGCTTTCCCCCCCCCCCCCCCCCCC
CACCCACCCACCCAATTATTCCAAGCGTTGGCTAGTTACACCACCACCAC
CACCACCACCGCGTCCGTCCTCGTCTTAACCCGAGCCGCACCTTCTCTTT
GTTTTCCTCCGTGTCTCGATCAGGTCCCTGCGCTGAGGGCCGGCGCCGTG
TCCTCAACGCATCCGCGCCAGGCAGGCATGGTGATCGGAGTGGTGCCCAG
GTACGACCCCCACGGAATGGGCCTCCCGATGGTGCCCCCGCGGCCACCGC
TGGAGCAGGGAAGGCCGCGCGCCGCCACCGTGGACGGCGAGCCCTCACAC
TCAAGAGGGGTAAGAGAGCTGTTAAAAATATAAATATAATTCTTCTCTAC
CGCAAAAACGTTTCTGTCCCCTCGCGCGGAACGTTTTCGCCTCGAAGGCT
TCGCTATTACTCCCCTCCCCCCCCCAGTACTTGCCTGAAACAACAAGGCG
GTGCCGGTCATGAATGTCTTACCATTCATCCACTCTGCTTTTGGTTCCCT
CCTGTCCCCTCTCGTTCTGCCGTACTCGACTTCATTTCCCCCCCGCGCAC
CCTTTTGATCCCGCTCGCGCTACAGTCTATCCCCGCGGCCCAGGTGGCAG
CACGCCGTCTTATCCCGAGAAGAAATTCTTCCCCCGACCCGAGCTCGCCA
TCCCTGGGCGGCGGTAGTGGTGGTGGTGGTGGTGACGGTAACAACCGACC
CCTTGTTCGCGACGCAGTGGTGCACCCAACTTCACCGGTGATGGACACGT
CGGCGCCGCGAGGCAACGAATTGCGGCAGAGTAGCGGCGCTGTATCGACA
TTTGAGCGAAACCCTCCGCCGCCGCTGCCGGGGATCGAACTATTGGCTCG
GGAGTGGGAAAGCGGAGAAACGGCCAGCGGAGGTGGCGAAGGCGGAGGGA
GAGATGGAGGCGGCCACTCGGACAGTTTTGGAGACTACAACCGAGGGAAC
ATTTCGGCTCCGCTGCTGGGGGCGTTTCCATTCTCGATCTGGAATTTGAT
CCAGTTCTCGTCGTCGCCGACGACGTCGGGGGGGCACATAAGTGCAGGCG
GAGGTCTTAGGCCCACCATTGACACGTCATGGCAGCACCGGGAAGTCGGA
ATCGGTCCGACTGCCCCGCCCAGCGGCGGCGGCTTCGGGGTGACTGGGTC
TGAGACTGGGGTTAGGACCGAAGGGCGGGAATGCACGGCGGGGCTAGTAG
CGCTCACGGAAAGCGGGCGAGGGATCGAAAGAATGTGTCCCACGTCTCCG
ACGGCTGAGTCGGCCTTGGGCGTCCACCCCGAGGTGGATGCTCCTCCCGC
TGCAGTAGCGAGGTCGGTGGCAACAATACACTCACGGTCTTGTAAAGTCG
GGATTTCTGGGGTGGAGCGGGAGCAAGAGCGAACCGCCCGATGGCGTCCC
GATTCTGTCGTTGTCGGTGAAAGAGAAGGCGGCAGTGGTGGTGGTGGCGA
CGGCGACAGCGGTAATAACGCGGCAGAACGTTTGGGAAGCGGGGGCGCGG
CATCTGCGGATGAAGCGCCTCCGCCGCAGAGCTTGGTTGGAGATGAGGTC
GGACGAGAGGAGCCTTCTCAGGAGACAGAGATCCTCCGAAGAGAACGCCT
GAGTTTGGGTGGTACCCAATACCGCGGCATGTACGACGACGGATAACGCG
GGCGAAAGCTTGTCGGGCTGCGTGAAATAGAGGACATGAAAGTCGCTCTC
CAAGGAAGGAACGTCCCGAACCGATGTCATACGCTCGTCGCGTTCCACGC
CTTCCTCGCACACTCTCATCGGTTGGCTAAGCATTCCCCTCACACATACA
AACACACAAACACACGCGTGTGCACACGCTGACGCCCACAATCTATCCCG
TGCGAAGAGCCAAGTCGAACTGGAGCTCGCCTTAGGCGCGCTGCCGACGC
TCTGCAGTTCTCTTAGGAGAGGGCGTCGACCCGCGCGGGCGTCCTCTTCT
ATGCTTATAATTCCATAAGGGCTGTGATAAAGACACGACTTCGCGACGGT
GCGGAGGGTGAGGAGAGGCCGGGCGTCGAGGACCGGAAGAGTCTTGGGCG
CGCCGCTCCATACCGTGTCGACTGGACGATGGTGTCTTTCTGTGGGAACG
CAGTGGCTGGCGGCGGCAGCAGCAGCAGCGATAAGGCGGCGCCCTCCTGC
CCTCCGTCCGTTCGCGTCGAAATCAAAGTGATGTCTTGGCGTAAAGACCA
TAATGATTGAGTGCACATCACCAGTGATCGGGAAACGACCCCCCCCCCTC
CTCCCACCCTCCCCTCCCATCTGTAAGAAGGTAACTTAACGTGCAAAATA
ATGCCCCGGTTTTCTTCACGGGTTCCGGTTTTCCATTAAAAAATGTACCA
TTTTTATTCATTTATTTATTTTCTCTGGGGCGCAAAAGCAACGAACAAAC
GGTTGTGGAGGGTGTTTGTTTTCTCCTTCCTTGGAGGTTAAAATTTTTAC
TGATTAGACCGGACATCCTCCCTTTGTCTTATGGGATAGGCTCTTAGGTC
TATGAATAACTTGATACTCCTTTTTGTTCTTGCCACTGGAAACAGAAAAC
ACATTAATTTCGGGAAACTTCGTGAGGAAAAACTATTGGCGGTTTTAAGC
ATCAGTATTTGATCGGTGGCGCCAAATTACGGCTGCCCTACTCGGATGTT
TGGAGTCGCAGCAAGAGGGTAGGTCAAAGTAAAGTTTTCGAATAAGCGCT
TCTTGCTGTGAAGTTGTATTTTTATTTTCAAAACCATGAACTCATTCCAA
CCCTCCGAACATCCACACCTTCTTTAGCGCCGTGAGAGGTGCAGTCCAGG
GGACCATCTATCGTAAGGTTCGAATGTGTACATAATTACCTTTGAGCACA
AAATCGTCACATGTGGTGATTATTCGTGCTCCCCAATAGTCGGGTCAACG
GTATAATGTCGAGGGTCCCATCATTATCCCGTACACTTACATAATTCATC
ATGTGGGGACTATGACCAAGCTAGATTTGATTTGTCGTAAACTAGGAAGG
GGATTAAAAAAAATAAAACATATCGGTAGAGACGTGGTTGATGTGTAATG
TGTAATGATTAAGTTTGCTAAGAACAGCTCAATTTGAC
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Coding sequence (CDS) from alignment at H-elongata_contig17882:1423..6810-

>mRNA_H-elongata_contig17882.4726.1 ID=mRNA_H-elongata_contig17882.4726.1|Name=mRNA_H-elongata_contig17882.4726.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3270bp|location=Sequence derived from alignment at H-elongata_contig17882:1423..6810- (Himanthalia elongata Himel1 dioecious)
ATGCTGAAGTTCACGTTCCTGCTCCAGCACCATGTACGGCACCGCCTACC
CTACGCGCCGCTGATCTTCACGCACGTCGTCGAGTCCCTCGTGTTCGTCC
CTATCATGATGCTGAAGTTCACGTTCCTGCTCCAGCACCATGTACGGCAC
CGCCTACCCTACGCGCCGCTGATCTTCACGCACGTCGTCGAGTCCCTCGT
GTTCGTCCCTATCATGGTGGGCATCTTGTTTTTCCTGTTCGAGTTTTTTT
CGGACCAGCTCCTGGCCTTCATGGTGCTGTCTGTAGTGTGGCTTTGCGAG
GTGTATTCGGTCGTCAGCGTCCGCACCTCCATGTCCATCCGTTTTTTCCC
CCAGGTGGGCATCTTGTTTTTCCTGTTCGAGTTTTTTTCGGACCAGCTCC
TGGCCTTCATGGTGCTGTCTGTAGTGTGGCTTTGCGAGGTGTATTCGGTC
GTCAGCGTCCGCACCTCCATGTCCATCCGTTTTTTCCCCCAGGTATTCTT
CATGTACTTTACGCTGTTTCATGTGTACTTCTTCTCCTTTCCCTTCGGGT
TCAGCTACCTTGCTCTCGTGACCACCGTGCTCTTTCTGCAGCACTCCATG
CTCTTCTTCTGGAACACCTACGAGGTATTCTTCATGTACTTTACGCTGTT
TCATGTGTACTTCTTCTCCTTTCCCTTCGGGTTCAGCTACCTTGCTCTCG
TGACCACCGTGCTCTTTCTGCAGCACTCCATGCTCTTCTTCTGGAACACC
TACGAGGTCCCTGCGCTGAGGGCCGGCGCCGTGTCCTCAACGCATCCGCG
CCAGGCAGGCATGGTGATCGGAGTGGTGCCCAGGTACGACCCCCACGGAA
TGGGCCTCCCGATGGTGCCCCCGCGGCCACCGCTGGAGCAGGGAAGGCCG
CGCGCCGCCACCGTGGACGGCGAGCCCTCACACTCAAGAGGGGTCCCTGC
GCTGAGGGCCGGCGCCGTGTCCTCAACGCATCCGCGCCAGGCAGGCATGG
TGATCGGAGTGGTGCCCAGGTACGACCCCCACGGAATGGGCCTCCCGATG
GTGCCCCCGCGGCCACCGCTGGAGCAGGGAAGGCCGCGCGCCGCCACCGT
GGACGGCGAGCCCTCACACTCAAGAGGGTCTATCCCCGCGGCCCAGGTGG
CAGCACGCCGTCTTATCCCGAGAAGAAATTCTTCCCCCGACCCGAGCTCG
CCATCCCTGGGCGGCGGTAGTGGTGGTGGTGGTGGTGACGGTAACAACCG
ACCCCTTGTTCGCGACGCAGTGGTGCACCCAACTTCACCGGTGATGGACA
CGTCGGCGCCGCGAGGCAACGAATTGCGGCAGAGTAGCGGCGCTGTATCG
ACATTTGAGCGAAACCCTCCGCCGCCGCTGCCGGGGATCGAACTATTGGC
TCGGGAGTGGGAAAGCGGAGAAACGGCCAGCGGAGGTGGCGAAGGCGGAG
GGAGAGATGGAGGCGGCCACTCGGACAGTTTTGGAGACTACAACCGAGGG
AACATTTCGGCTCCGCTGCTGGGGGCGTTTCCATTCTCGATCTGGAATTT
GATCCAGTTCTCGTCGTCGCCGACGACGTCGGGGGGGCACATAAGTGCAG
GCGGAGGTCTTAGGCCCACCATTGACACGTCATGGCAGCACCGGGAAGTC
GGAATCGGTCCGACTGCCCCGCCCAGCGGCGGCGGCTTCGGGGTGACTGG
GTCTGAGACTGGGGTTAGGACCGAAGGGCGGGAATGCACGGCGGGGCTAG
TAGCGCTCACGGAAAGCGGGCGAGGGATCGAAAGAATGTGTCCCACGTCT
CCGACGGCTGAGTCGGCCTTGGGCGTCCACCCCGAGGTGGATGCTCCTCC
CGCTGCAGTAGCGAGGTCGGTGGCAACAATACACTCACGGTCTTGTAAAG
TCGGGATTTCTGGGGTGGAGCGGGAGCAAGAGCGAACCGCCCGATGGCGT
CCCGATTCTGTCGTTGTCGGTGAAAGAGAAGGCGGCAGTGGTGGTGGTGG
CGACGGCGACAGCGGTAATAACGCGGCAGAACGTTTGGGAAGCGGGGGCG
CGGCATCTGCGGATGAAGCGCCTCCGCCGCAGAGCTTGGTTGGAGATGAG
GTCGGACGAGAGGAGCCTTCTCAGGAGACAGAGATCCTCCGAAGAGAACG
CCTGAGTTTGGGTGGTACCCAATACCGCGGCATGTACGACGACGGATAAT
CTATCCCCGCGGCCCAGGTGGCAGCACGCCGTCTTATCCCGAGAAGAAAT
TCTTCCCCCGACCCGAGCTCGCCATCCCTGGGCGGCGGTAGTGGTGGTGG
TGGTGGTGACGGTAACAACCGACCCCTTGTTCGCGACGCAGTGGTGCACC
CAACTTCACCGGTGATGGACACGTCGGCGCCGCGAGGCAACGAATTGCGG
CAGAGTAGCGGCGCTGTATCGACATTTGAGCGAAACCCTCCGCCGCCGCT
GCCGGGGATCGAACTATTGGCTCGGGAGTGGGAAAGCGGAGAAACGGCCA
GCGGAGGTGGCGAAGGCGGAGGGAGAGATGGAGGCGGCCACTCGGACAGT
TTTGGAGACTACAACCGAGGGAACATTTCGGCTCCGCTGCTGGGGGCGTT
TCCATTCTCGATCTGGAATTTGATCCAGTTCTCGTCGTCGCCGACGACGT
CGGGGGGGCACATAAGTGCAGGCGGAGGTCTTAGGCCCACCATTGACACG
TCATGGCAGCACCGGGAAGTCGGAATCGGTCCGACTGCCCCGCCCAGCGG
CGGCGGCTTCGGGGTGACTGGGTCTGAGACTGGGGTTAGGACCGAAGGGC
GGGAATGCACGGCGGGGCTAGTAGCGCTCACGGAAAGCGGGCGAGGGATC
GAAAGAATGTGTCCCACGTCTCCGACGGCTGAGTCGGCCTTGGGCGTCCA
CCCCGAGGTGGATGCTCCTCCCGCTGCAGTAGCGAGGTCGGTGGCAACAA
TACACTCACGGTCTTGTAAAGTCGGGATTTCTGGGGTGGAGCGGGAGCAA
GAGCGAACCGCCCGATGGCGTCCCGATTCTGTCGTTGTCGGTGAAAGAGA
AGGCGGCAGTGGTGGTGGTGGCGACGGCGACAGCGGTAATAACGCGGCAG
AACGTTTGGGAAGCGGGGGCGCGGCATCTGCGGATGAAGCGCCTCCGCCG
CAGAGCTTGGTTGGAGATGAGGTCGGACGAGAGGAGCCTTCTCAGGAGAC
AGAGATCCTCCGAAGAGAACGCCTGAGTTTGGGTGGTACCCAATACCGCG
GCATGTACGACGACGGATAA
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