prot_H-elongata_contig17877.4722.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig17877.4722.1
Unique Nameprot_H-elongata_contig17877.4722.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length301
Homology
BLAST of mRNA_H-elongata_contig17877.4722.1 vs. uniprot
Match: A0A6H5JTK7_9PHAE (F5/8 type C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK7_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 1.220e-63
Identity = 140/319 (43.89%), Postives = 180/319 (56.43%), Query Frame = 0
Query:    5 SSQSTSAVCAESATTTCAITQWTIAS-DVE-TLPTYYTYDEAENPGQITEVWLRV-NCSTE-CESYPAEVLVVCGDGSTSGRSSPTPSPVTATSTDCGIVNVAGTSGGELDGTYYDDGSPLQGEVTQFNGYDA--SDLTSNGNTLVMNSTTGDCPSPSSTVTETDGDCLWRQWWITPGDDNFDAFEYFTFDEADHPVDITPGGLWHTLKTIEKPYAGAINITCAPEVTPAL-----PTPTPTTSISVVNRTDKGTSEDTSYIPAIIGG---------------VMGGVAVLGFLGFVAYRRMNIPFSPPLPPPSYNDLV 297
            SS +  A CA+S  + C + +W IA  D + TLPTY+ YDEA +P  I EVWLR+ NC T  C+S PAE+ ++CGDG+T+  S  TP+P + T++DCG++ VAGTSG E DG YYDDGS L  +VTQ+ GYD    +L SNG  +V N     C + SS+ T  D  C WRQWWI           YFT+DEADHPVDI  G LW+T      PY GA+ +TCAP  TP L     P PT     +      +GT    +  P + GG               V GGVA+L  LG VAY+  +       PPPSY+D +
Sbjct:  313 SSSAAPAQCADSTASDCNVNRWQIAPLDADSTLPTYWVYDEALHPSTINEVWLRLDNCGTGGCQSSPAELTILCGDGTTASGSG-TPAPASVTASDCGVIEVAGTSGAESDGFYYDDGSELGDDVTQYGGYDVVNGELMSNGRAVVANRVNSTCATTSSS-TGADA-CSWRQWWIEASSSG--TVSYFTYDEADHPVDIAAGALWYTSDGSIMPYDGAVAVTCAPATTPTLTPATSPVPTTDDDGTATRMPVEGTHSPGTAAPVVPGGEXXXXXXXXXXXXXXVAGGVALLAILGAVAYKFKD-------PPPSYDDAM 619          
BLAST of mRNA_H-elongata_contig17877.4722.1 vs. uniprot
Match: D7G7P1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7P1_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 4.370e-58
Identity = 140/336 (41.67%), Postives = 175/336 (52.08%), Query Frame = 0
Query:    1 ATIASSQSTSAVCAESATTTCAITQWTIA-SDVE-TLPTYYTYDEAENPGQITEVWLRV-NCSTE-CESYPAEVLVVCGDGSTSGRSSPTPSPVTATSTDCGIVNVAGTSGGELDGTYYDDGSPLQGEVTQFNGYDA--SDLTSNGNTLVMNSTTGDCPSPSSTVTETDGD-CLWRQWWITPGDDNFDAFEYFTFDEADHPVDITPGGLWHTLKTIEKPYAGAINITCAPEVTPALPTPTPTTSISVVNRTDKGTSEDTS-------------YIPAIIGG-------------------VMGGVAVLGFLGFVAYRRMNIPFSPPLPPPSYNDLV 297
            AT+ASS +  A CA+S+ + C + +W I  SD + TLPTY  YDEA +P  I EVWLR+ NC T  C+S PAE+ +VCGDG+T+  S  TP+PV+ T++DC  + VAGTSG E DG YYDDGS L   VTQ+ GYD    +LTSNG  +V N     C   ++T T T  D C WRQWWI P         YFT+DEA HPVDI  G LW+T      PY G + +TCAP  TP                 D G  + T+               P + GG                   V GGVA+L  LG VAY+             SY+DLV
Sbjct:   33 ATLASSDAP-AQCADSSASDCTVNRWQITPSDADSTLPTYVVYDEALHPSTINEVWLRLDNCGTGGCQSSPAELTIVCGDGTTAAGSG-TPAPVSVTASDCEAIEVAGTSGAESDGFYYDDGSELGDGVTQYVGYDVVNGELTSNGRAVVANRVDSTC---ATTTTSTGADACSWRQWWIEPSSSG--TVSYFTYDEAGHPVDIAAGTLWYTSDDTVVPYDGDVVVTCAPATTPXXXXXXXXXXXXXXXXXDGGNDDGTATRMPVEGTHAPGTVAPVVAGGEDGDGDXXXXXXXXXXXXXVAGGVALLAILGAVAYKLKXXXXXXX----SYDDLV 357          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17877.4722.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTK7_9PHAE1.220e-6343.89F5/8 type C domain-containing protein n=1 Tax=Ecto... [more]
D7G7P1_ECTSI4.370e-5841.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 278..300
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..253
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 254..277
NoneNo IPR availableTMHMMTMhelixcoord: 253..275

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17877contigH-elongata_contig17877:2098..4339 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17877.4722.1mRNA_H-elongata_contig17877.4722.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig17877 2098..4339 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig17877.4722.1 ID=prot_H-elongata_contig17877.4722.1|Name=mRNA_H-elongata_contig17877.4722.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=301bp
ATIASSQSTSAVCAESATTTCAITQWTIASDVETLPTYYTYDEAENPGQI
TEVWLRVNCSTECESYPAEVLVVCGDGSTSGRSSPTPSPVTATSTDCGIV
NVAGTSGGELDGTYYDDGSPLQGEVTQFNGYDASDLTSNGNTLVMNSTTG
DCPSPSSTVTETDGDCLWRQWWITPGDDNFDAFEYFTFDEADHPVDITPG
GLWHTLKTIEKPYAGAINITCAPEVTPALPTPTPTTSISVVNRTDKGTSE
DTSYIPAIIGGVMGGVAVLGFLGFVAYRRMNIPFSPPLPPPSYNDLVQGS
*
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