mRNA_H-elongata_contig17870.4719.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17870.4719.1
Unique NamemRNA_H-elongata_contig17870.4719.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17870.4719.1 vs. uniprot
Match: D7FVS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS0_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 3.480e-19
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 RGWEKFHTPRNICLALSGEVGELCELFQWKDEAVCSVGLPDWTSQARDKLAQV 159
            R W+KFHTPRNICLAL GE GEL ELFQ+KDE  C  GLP W+   RDKL+QV
Sbjct:  147 RNWQKFHTPRNICLALMGETGELSELFQFKDEDTCCQGLPAWSRDDRDKLSQV 199
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BLAST of mRNA_H-elongata_contig17870.4719.1 vs. uniprot
Match: A0A6H5KIJ4_9PHAE (MazG domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ4_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.660e-18
Identity = 37/54 (68.52%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 RGWEKFHTPRNICLALSGEVGELCELFQWKDEAVCSVGLPDWTSQARDKLAQVM 162
            R W+KFHTPRNICLAL GE GEL ELFQ+KDE  C  GLP W+   RDKL+Q M
Sbjct:  191 RNWQKFHTPRNICLALMGEAGELSELFQFKDEDTCCQGLPSWSRDDRDKLSQEM 244
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BLAST of mRNA_H-elongata_contig17870.4719.1 vs. uniprot
Match: R1ECV0_EMIHU (Uncharacterized protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ECV0_EMIHU)

HSP 1 Score: 78.2 bits (191), Expect = 1.810e-17
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 RGWEKFHTPRNICLALSGEVGELCELFQWKDEAVCSVGLPDWTSQARDKLAQVM 162
            R W++FHTPR++ LAL+GEVGELCE FQW+ +A C+ GLP WT   R  L + M
Sbjct:   16 RDWDQFHTPRSLALALTGEVGELCECFQWRGDAACAPGLPGWTDADRTHLGEEM 69
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BLAST of mRNA_H-elongata_contig17870.4719.1 vs. uniprot
Match: A0A7S0X5W6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X5W6_9CHLO)

HSP 1 Score: 77.8 bits (190), Expect = 5.810e-17
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 RGWEKFHTPRNICLALSGEVGELCELFQWKDEAVCSVGLPDWTSQARDKLAQVM 162
            R W++FHTPRN+ LA+ GEVGEL E+FQW+ +  C+ GLPDWT Q +  L + M
Sbjct:   66 RNWDQFHTPRNLLLAMVGEVGELSEIFQWRGDGACTPGLPDWTDQDKTHLGEEM 119
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BLAST of mRNA_H-elongata_contig17870.4719.1 vs. uniprot
Match: A0A5J4YZL8_PORPP (dCTP pyrophosphatase 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZL8_PORPP)

HSP 1 Score: 77.8 bits (190), Expect = 6.880e-17
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 RGWEKFHTPRNICLALSGEVGELCELFQWKDEAVCSVGLPDWTSQARDKLAQVMEN 168
            R WE+FHTPRN+ LAL GEVGEL ELFQWK +A C  GLP W+   R+ L + M +
Sbjct:   32 REWEQFHTPRNLLLALVGEVGELAELFQWKGDAGCGPGLPGWSDAEREHLGEEMSD 87
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BLAST of mRNA_H-elongata_contig17870.4719.1 vs. uniprot
Match: C1FD76_MICCC (dCTP pyrophosphatase 1 n=2 Tax=Micromonas TaxID=38832 RepID=C1FD76_MICCC)

HSP 1 Score: 75.5 bits (184), Expect = 4.050e-16
Identity = 35/58 (60.34%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    1 RGWEKFHTPRNICLALSGEVGELCELFQWKDEAVCSVGLPDWTSQAR----DKLAQVM 162
            RGWEKFHTPRN+ LAL GEVGEL ELFQW+ +     GLPDW   A+    D+LA V+
Sbjct:   27 RGWEKFHTPRNLLLALVGEVGELSELFQWRGDEDARPGLPDWDDVAKTRVGDELADVL 84
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BLAST of mRNA_H-elongata_contig17870.4719.1 vs. uniprot
Match: A0A7S1CSF4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CSF4_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 6.140e-16
Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 RGWEKFHTPRNICLALSGEVGELCELFQWKDEAVCSVGLPDWTSQARDKLAQVMEN 168
            R W++FHTPRN+ LA++GEVGEL ELFQW+ +  C  GLP WT+  R  L + + +
Sbjct:   35 RDWDQFHTPRNLVLAMTGEVGELAELFQWRHDGGCEPGLPTWTAAERTHLGEELSD 90
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BLAST of mRNA_H-elongata_contig17870.4719.1 vs. uniprot
Match: A0A7S3RKS5_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RKS5_9SPIT)

HSP 1 Score: 75.1 bits (183), Expect = 1.920e-15
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 RGWEKFHTPRNICLALSGEVGELCELFQWKDEAVCSVGLPDWTSQAR----DKLAQVM 162
            R W++FHTPRN+ LAL+GEVGEL E FQWK +A C+ GLP+W+   R    +++A VM
Sbjct:   81 RDWDQFHTPRNLTLALTGEVGELSECFQWKSDASCAPGLPEWSEAERLHLGEEIADVM 138
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BLAST of mRNA_H-elongata_contig17870.4719.1 vs. uniprot
Match: A0A7S2FGT9_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2FGT9_9EUKA)

HSP 1 Score: 76.3 bits (186), Expect = 3.110e-15
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    1 RGWEKFHTPRNICLALSGEVGELCELFQWKDEAVCSVGLPDWTSQARDKLAQVM 162
            RGW++FH PRN+CLAL GEVGEL E FQWK +A  + GL DW  Q R  L + M
Sbjct:  163 RGWDQFHQPRNLCLALVGEVGELAECFQWKGDAGATTGLSDWPEQKRAHLGEEM 216
[Close]
BLAST of mRNA_H-elongata_contig17870.4719.1 vs. uniprot
Match: A0A132A5K1_SARSC (dCTP pyrophosphatase 1 n=1 Tax=Sarcoptes scabiei TaxID=52283 RepID=A0A132A5K1_SARSC)

HSP 1 Score: 72.8 bits (177), Expect = 3.810e-15
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 RGWEKFHTPRNICLALSGEVGELCELFQWKDEAVCSVGLPDWTSQARDKLAQVMEN 168
            R WE+FH PRNI LAL GE+GE+ E FQWK ++ C  GLP WT   R+ L + + +
Sbjct:   35 RNWEQFHQPRNILLALIGEIGEVAEHFQWKPDSECEQGLPKWTDDEREALGEELSD 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17870.4719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVS0_ECTSI3.480e-1969.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIJ4_9PHAE1.660e-1868.52MazG domain-containing protein n=1 Tax=Ectocarpus ... [more]
R1ECV0_EMIHU1.810e-1757.41Uncharacterized protein (Fragment) n=1 Tax=Emilian... [more]
A0A7S0X5W6_9CHLO5.810e-1755.56Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A5J4YZL8_PORPP6.880e-1758.93dCTP pyrophosphatase 1 n=1 Tax=Porphyridium purpur... [more]
C1FD76_MICCC4.050e-1660.34dCTP pyrophosphatase 1 n=2 Tax=Micromonas TaxID=38... [more]
A0A7S1CSF4_9STRA6.140e-1651.79Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S3RKS5_9SPIT1.920e-1555.17Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A7S2FGT9_9EUKA3.110e-1559.26Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A132A5K1_SARSC3.810e-1551.79dCTP pyrophosphatase 1 n=1 Tax=Sarcoptes scabiei T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17870contigH-elongata_contig17870:3237..3407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue1.8e-12
Seed eggNOG ortholog2903.EOD18729
Preferred nameDCTPP1
KEGG rclassRC00002
KEGG koko:K16904
KEGG ReactionR01667,R01668
KEGG Pathwayko00240,ko01100,map00240,map01100
GOsGO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006220,GO:0006244,GO:0006253,GO:0006259,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009166,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009223,GO:0009262,GO:0009264,GO:0009394,GO:0009605,GO:0009987,GO:0009991,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019103,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0022607,GO:0031668,GO:0032552,GO:0032556,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0036094,GO:0042262,GO:0042802,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046065,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0047840,GO:0050896,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051716,GO:0055086,GO:0065003,GO:0071496,GO:0071704,GO:0071840,GO:0072527,GO:0072529,GO:0090304,GO:0097159,GO:0097367,GO:1901135,GO:1901136,GO:1901265,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576
EggNOG free text desc.dCTP metabolic process
EggNOG OGs2S210@2759,COG1694@1
EC3.6.1.12
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930031.5395372-CDS-H-elongata_contig17870:3236..34071622930031.5395372-CDS-H-elongata_contig17870:3236..3407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17870 3237..3407 -
1691679253.9569366-CDS-H-elongata_contig17870:3236..34071691679253.9569366-CDS-H-elongata_contig17870:3236..3407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17870 3237..3407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17870.4719.1prot_H-elongata_contig17870.4719.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17870 3237..3407 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17870.4719.1

>prot_H-elongata_contig17870.4719.1 ID=prot_H-elongata_contig17870.4719.1|Name=mRNA_H-elongata_contig17870.4719.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
RGWEKFHTPRNICLALSGEVGELCELFQWKDEAVCSVGLPDWTSQARDKL
AQVMEN*
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mRNA from alignment at H-elongata_contig17870:3237..3407-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17870.4719.1 ID=mRNA_H-elongata_contig17870.4719.1|Name=mRNA_H-elongata_contig17870.4719.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig17870:3237..3407- (Himanthalia elongata Himel1 dioecious)
AGGGGTTGGGAGAAGTTCCACACGCCGCGAAACATCTGCCTGGCTCTGAG
TGGTGAGGTGGGCGAGTTGTGTGAGCTCTTTCAGTGGAAGGACGAAGCCG
TCTGCTCTGTGGGGTTGCCTGACTGGACCAGCCAGGCACGAGACAAGCTT
GCACAGGTGATGGAAAATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig17870:3237..3407-

>mRNA_H-elongata_contig17870.4719.1 ID=mRNA_H-elongata_contig17870.4719.1|Name=mRNA_H-elongata_contig17870.4719.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig17870:3237..3407- (Himanthalia elongata Himel1 dioecious)
AGGGGTTGGGAGAAGTTCCACACGCCGCGAAACATCTGCCTGGCTCTGAG
TGGTGAGGTGGGCGAGTTGTGTGAGCTCTTTCAGTGGAAGGACGAAGCCG
TCTGCTCTGTGGGGTTGCCTGACTGGACCAGCCAGGCACGAGACAAGCTT
GCACAGGTGATGGAAAATTAAAGGGGTTGGGAGAAGTTCCACACGCCGCG
AAACATCTGCCTGGCTCTGAGTGGTGAGGTGGGCGAGTTGTGTGAGCTCT
TTCAGTGGAAGGACGAAGCCGTCTGCTCTGTGGGGTTGCCTGACTGGACC
AGCCAGGCACGAGACAAGCTTGCACAGGTGATGGAAAATTAA
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