mRNA_H-elongata_contig17857.4714.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17857.4714.1
Unique NamemRNA_H-elongata_contig17857.4714.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17857.4714.1 vs. uniprot
Match: A0A2Z6NZX7_TRISU (CCHC-type domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NZX7_TRISU)

HSP 1 Score: 55.8 bits (133), Expect = 4.540e-6
Identity = 43/161 (26.71%), Postives = 81/161 (50.31%), Query Frame = 1 
Query:    1 KDAWAALREKIDG---CSREALRAAYVEMESMKMRPGEDPDEFLYKKDHFRDRLNSLLTPKEGPSDRQFEDIILQCLPLEYDQIRQTHFERENCNLADIRM---MSKLYADNLARLNSNATKGIAERGVAI-----QATGRDLSTIQCYHCNKLGHFKSEC 450
            KDAW  L++   G     +  L+A   + E ++M+  E   E+  + ++  +++ +    K   S+ +  + +L+ L  ++D I  T  + ++  L++I+M    S L A  L   +    + + ++  +      Q T +D STIQCY+CNK GH+ SEC
Sbjct:   91 KDAWDILQKSYGGDAKVKKVKLQALKRQFELLEMKSDEAVAEYFTRVENLTNQMKNC---KSTLSEEETVEKVLRTLTHKFDHIVVTIEQTKD--LSEIKMEDLQSTLEAHELKHGSKKGKESVEDKSESSKKEGGQKTKKDKSTIQCYNCNKYGHYSSEC 246
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17857.4714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2Z6NZX7_TRISU4.540e-626.71CCHC-type domain-containing protein n=1 Tax=Trifol... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17857contigH-elongata_contig17857:6561..7040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size480
Cds size480
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930031.162385-CDS-H-elongata_contig17857:6560..70401622930031.162385-CDS-H-elongata_contig17857:6560..7040Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17857 6561..7040 +
1691679253.8170712-CDS-H-elongata_contig17857:6560..70401691679253.8170712-CDS-H-elongata_contig17857:6560..7040Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17857 6561..7040 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17857.4714.1prot_H-elongata_contig17857.4714.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17857 6561..7040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17857.4714.1

>prot_H-elongata_contig17857.4714.1 ID=prot_H-elongata_contig17857.4714.1|Name=mRNA_H-elongata_contig17857.4714.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp
KDAWAALREKIDGCSREALRAAYVEMESMKMRPGEDPDEFLYKKDHFRDR
LNSLLTPKEGPSDRQFEDIILQCLPLEYDQIRQTHFERENCNLADIRMMS
KLYADNLARLNSNATKGIAERGVAIQATGRDLSTIQCYHCNKLGHFKSEC
ADFKGRGGQ*
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mRNA from alignment at H-elongata_contig17857:6561..7040+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17857.4714.1 ID=mRNA_H-elongata_contig17857.4714.1|Name=mRNA_H-elongata_contig17857.4714.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=480bp|location=Sequence derived from alignment at H-elongata_contig17857:6561..7040+ (Himanthalia elongata Himel1 dioecious)
AAAGACGCTTGGGCGGCTCTACGCGAGAAGATCGACGGATGCTCGCGCGA
GGCCTTGCGGGCGGCATACGTCGAAATGGAATCCATGAAAATGCGGCCGG
GCGAGGATCCAGATGAGTTCCTTTACAAGAAAGACCACTTTCGCGACCGC
CTAAACTCTCTTCTCACCCCCAAGGAAGGCCCTTCGGACCGCCAGTTTGA
GGACATCATCCTGCAGTGCCTTCCACTAGAATACGATCAAATCCGCCAGA
CCCACTTCGAGAGGGAGAACTGCAACCTTGCAGACATTCGGATGATGTCA
AAACTTTACGCCGACAACCTCGCTCGCTTGAACTCCAACGCGACAAAGGG
CATCGCGGAACGTGGCGTCGCTATACAAGCGACGGGACGAGATCTGAGCA
CTATCCAGTGCTACCACTGCAACAAGCTTGGCCATTTCAAGAGTGAGTGT
GCCGACTTCAAGGGACGAGGCGGACAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig17857:6561..7040+

>mRNA_H-elongata_contig17857.4714.1 ID=mRNA_H-elongata_contig17857.4714.1|Name=mRNA_H-elongata_contig17857.4714.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig17857:6561..7040+ (Himanthalia elongata Himel1 dioecious)
AAAGACGCTTGGGCGGCTCTACGCGAGAAGATCGACGGATGCTCGCGCGA
GGCCTTGCGGGCGGCATACGTCGAAATGGAATCCATGAAAATGCGGCCGG
GCGAGGATCCAGATGAGTTCCTTTACAAGAAAGACCACTTTCGCGACCGC
CTAAACTCTCTTCTCACCCCCAAGGAAGGCCCTTCGGACCGCCAGTTTGA
GGACATCATCCTGCAGTGCCTTCCACTAGAATACGATCAAATCCGCCAGA
CCCACTTCGAGAGGGAGAACTGCAACCTTGCAGACATTCGGATGATGTCA
AAACTTTACGCCGACAACCTCGCTCGCTTGAACTCCAACGCGACAAAGGG
CATCGCGGAACGTGGCGTCGCTATACAAGCGACGGGACGAGATCTGAGCA
CTATCCAGTGCTACCACTGCAACAAGCTTGGCCATTTCAAGAGTGAGTGT
GCCGACTTCAAGGGACGAGGCGGACAGTGAAAAGACGCTTGGGCGGCTCT
ACGCGAGAAGATCGACGGATGCTCGCGCGAGGCCTTGCGGGCGGCATACG
TCGAAATGGAATCCATGAAAATGCGGCCGGGCGAGGATCCAGATGAGTTC
CTTTACAAGAAAGACCACTTTCGCGACCGCCTAAACTCTCTTCTCACCCC
CAAGGAAGGCCCTTCGGACCGCCAGTTTGAGGACATCATCCTGCAGTGCC
TTCCACTAGAATACGATCAAATCCGCCAGACCCACTTCGAGAGGGAGAAC
TGCAACCTTGCAGACATTCGGATGATGTCAAAACTTTACGCCGACAACCT
CGCTCGCTTGAACTCCAACGCGACAAAGGGCATCGCGGAACGTGGCGTCG
CTATACAAGCGACGGGACGAGATCTGAGCACTATCCAGTGCTACCACTGC
AACAAGCTTGGCCATTTCAAGAGTGAGTGTGCCGACTTCAAGGGACGAGG
CGGACAGTGA
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