mRNA_H-elongata_contig17821.4697.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17821.4697.1
Unique NamemRNA_H-elongata_contig17821.4697.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17821.4697.1 vs. uniprot
Match: A0A6H5K2P7_9PHAE (WSC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2P7_9PHAE)

HSP 1 Score: 320 bits (820), Expect = 6.230e-104
Identity = 145/205 (70.73%), Postives = 168/205 (81.95%), Query Frame = 1
Query:    1 RITFGTGTDETSEDLCDAFGPAGVYNSGPNGIGCYWDLPSEDSGNTDRLLGPGESFLYNLHETSDDVRWSGTIWASTGCDWIDGCATGVCYSPDTDYVCPAYVGPSGPTTKAEFTLSDSGKDYYDVSAIDGTNLPMMIEPNNPIYPDDTTTNIFKYECGSPGSPNSP-TDLGDCDWSYEDYVGDV--DESLSQYLRLVFPEDYEN 606
            RITFG+GTD  S+D CDA+GP+  YN+GP GIGCYWD P E+SGNTDR+L PG++F Y LHET  DVRWSGTIW STGCD I GCATGVCYSP TDY+CPAYVGP GPTTKAEFTLS++GKDYYD+SAIDGTNLPMMIEP+NP++P+ T  NI KY+CGSPG+P S  + +  C WSYE  V D+   E LSQ+LRLV PEDYEN
Sbjct:  206 RITFGSGTDPESKDNCDAWGPSATYNTGPMGIGCYWDFPEEESGNTDRMLSPGQAFRYYLHETDSDVRWSGTIWGSTGCDKIAGCATGVCYSPSTDYICPAYVGPGGPTTKAEFTLSETGKDYYDISAIDGTNLPMMIEPDNPVFPNSTEQNIMKYQCGSPGAPVSHHSKIDGCTWSYETTVPDLHGSEDLSQFLRLVLPEDYEN 410          
BLAST of mRNA_H-elongata_contig17821.4697.1 vs. uniprot
Match: D7FRB8_ECTSI (Thaumatin-domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRB8_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 6.460e-25
Identity = 67/168 (39.88%), Postives = 92/168 (54.76%), Query Frame = 1
Query:  100 CYWDLPSEDSGNTDRLLGPGESFLYNLHETS-DDVRWSGTIWASTGCDWIDGCATGVCYSPD--TDYVCPAYVGPSGPTTKAEFTLSDSGKDYYDVSAIDGTNLPMMIEPNNPIYPDDTTTNIFKYECGSPGSPNSPTD-LGDCDWSYE--DYVGDVDESLSQYLRLV 585
            C+W LP  +   T  +  PG S    L   + + VRWSG +WA+TGC    GC T  C       D  CP   GP+GP TKAEFTL D+G DYYDV+AIDG N+P+ ++P+    P +   +   Y C +PG  +S ++ L  C W ++  +  G  D  +S YLR V
Sbjct:  410 CFWGLPLPEDDKTFDIE-PGGSIEVILDNNAVNGVRWSGNMWAATGCHSKVGCETASCLRNIGYPDGYCPPSTGPTGPVTKAEFTLVDTGVDYYDVTAIDGVNVPVEMKPDPLSSPLEKLED--PYWCSNPGGVSSMSEELEGCTWEFDATEIDGFPDHDMSMYLRWV 574          
BLAST of mRNA_H-elongata_contig17821.4697.1 vs. uniprot
Match: A0A378LTF9_9GAMM (Thaumatin domain-containing protein n=1 Tax=Legionella wadsworthii TaxID=28088 RepID=A0A378LTF9_9GAMM)

HSP 1 Score: 82.0 bits (201), Expect = 1.220e-14
Identity = 54/168 (32.14%), Postives = 75/168 (44.64%), Query Frame = 1
Query:   28 ETSEDLCDAFGPAGVYNSGPNGIGCYWDLPSEDSGNTDRLLGPG-ESFLYNLHETSDDVRWSGTIWASTGCDWIDGCATGVCYSPDTDYVCPAYVGPSGPTTKAEFTLSDSGKDYYDVSAIDGTNLPMMIEP-NNPIYPDDTTTNIFKYECGSPGSPNSPTDLGDCDW 525
            ET     D +      + G  G  C+W  P   + N       G  S +    +  +   WSG     T C    GC T  C + +    CPA  G   P T+AEFT   S  D+YDVSA++G N+P+ + P N P+  +D       Y CG+PGS    T++G C W
Sbjct:  450 ETCATDADCYPNNTCVDRGAGGKHCFWTNPVPANNNFKLAPNGGVNSVVIPYTKLPNGATWSGAAAGRTNCTSA-GCETADCGNGEGG--CPAGRGFKQPATQAEFTFQTSATDFYDVSAVNGLNIPVAMTPVNTPVNSNDP------YNCGAPGSTTPNTNIGACTW 608          
BLAST of mRNA_H-elongata_contig17821.4697.1 vs. uniprot
Match: A0A453RQP2_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453RQP2_AEGTS)

HSP 1 Score: 74.3 bits (181), Expect = 1.270e-12
Identity = 44/102 (43.14%), Postives = 57/102 (55.88%), Query Frame = 1
Query:  148 LGPGESFLYNLHETSDDVRWSGTIWASTGCDWIDG---CATGVCYSPDTDYVCPAYVGPSGPTTKAEFTLS-DSGKDYYDVSAIDGTNLPMMIEPNNPIYPD 441
            L PG+S             WSG  WA +GC++  G   C TG C S + +  C    G + P T AEFTL  D GKD+YDVS +DG NLPM+++P+ P  PD
Sbjct:   62 LSPGQS-----RSIYGPTGWSGRFWARSGCNFNGGKGTCVTGDCGSGEIE--CRG-AGATPPATLAEFTLDGDGGKDFYDVSLVDGYNLPMLVQPSAPGCPD 155          
BLAST of mRNA_H-elongata_contig17821.4697.1 vs. uniprot
Match: A0A804QIP2_MAIZE (Uncharacterized protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A804QIP2_MAIZE)

HSP 1 Score: 73.6 bits (179), Expect = 2.270e-12
Identity = 47/102 (46.08%), Postives = 55/102 (53.92%), Query Frame = 1
Query:  148 LGPGESFLYNLHETSDDVRWSGTIWASTGC--DWIDG---CATGVCYSPDTDYVCPAYVGPSGPTTKAEFTLSDSGKDYYDVSAIDGTNLPMMIEPNNPIYP 438
            LGPGE+        +    WSG  WA TGC  D   G   CATG C S + +  C    G + P T AEFTL   GKDYYDVS +DG NLPM++E   P  P
Sbjct:   56 LGPGET-----RSLTAPPGWSGRFWARTGCAFDAASGKGACATGDCGSGEVE--CRGR-GATPPATLAEFTLGGGGKDYYDVSLVDGYNLPMVVEAAAPGCP 149          
BLAST of mRNA_H-elongata_contig17821.4697.1 vs. uniprot
Match: A0A3B6TQU4_WHEAT (Uncharacterized protein n=8 Tax=Triticeae TaxID=147389 RepID=A0A3B6TQU4_WHEAT)

HSP 1 Score: 74.3 bits (181), Expect = 2.600e-12
Identity = 44/102 (43.14%), Postives = 57/102 (55.88%), Query Frame = 1
Query:  148 LGPGESFLYNLHETSDDVRWSGTIWASTGCDWIDG---CATGVCYSPDTDYVCPAYVGPSGPTTKAEFTLS-DSGKDYYDVSAIDGTNLPMMIEPNNPIYPD 441
            L PG+S             WSG  WA +GC++  G   C TG C S + +  C    G + P T AEFTL  D GKD+YDVS +DG NLPM+++P+ P  PD
Sbjct:   62 LSPGQS-----RSIYGPTGWSGRFWARSGCNFNGGKGTCVTGDCGSGEIE--CRG-AGATPPATLAEFTLDGDGGKDFYDVSLVDGYNLPMLVQPSAPGCPD 155          
BLAST of mRNA_H-elongata_contig17821.4697.1 vs. uniprot
Match: B5LW99_9PHYC (Putative thaumatin/PR5-like protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LW99_9PHYC)

HSP 1 Score: 74.7 bits (182), Expect = 2.670e-12
Identity = 51/162 (31.48%), Postives = 73/162 (45.06%), Query Frame = 1
Query:  100 CYWDLPSEDSGNTDRLLGPGESFLYNLHETSDDVRWSGTIWASTGCDWIDGCATGVCYSPDTDYVCPAYVGPSGPTTKAEFTLSDSGKDYYDVSAIDGTNLPMMIEPNNPIYPDDTTTNIFKYECGSPGSPNSPTDLGDCDWSYEDYVGDVDESLSQYLRLV 585
            C+W L         ++L  G S+  ++HE  + + +SG +W      +   C  G C           + GP G  TK EFT   +G DYYD+S I+G NLP+ + P++    D    N  KY CG  G        GDC W ++      D  L +YL LV
Sbjct:   77 CFWHLEGSP-----KVLLSGASWETDIHEVKNHL-FSGNVWGVKEDQFDSHCRGGECMP---------WRGPGGSVTKVEFTFIPNGIDYYDISVIEGVNLPVTMSPDSG---DKDLEN--KYICGVAG--------GDCSWDFK-----PDHDLEKYLTLV 205          
BLAST of mRNA_H-elongata_contig17821.4697.1 vs. uniprot
Match: UPI001F5C8AB7 (thaumatin-like protein 1 n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5C8AB7)

HSP 1 Score: 74.3 bits (181), Expect = 2.690e-12
Identity = 48/105 (45.71%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  148 LGPGES-FLYNLHETSDDVRWSGTIWASTGCDWIDG-----CATGVCYSPDTDYVCPAYVGPSGPTTKAEFTLS-DSGKDYYDVSAIDGTNLPMMIEPNNPIYPD 441
            L PG+S  LY          WSG  W  +GCD+ DG     CATG C S + +  C    G + P T AEFTL  D GKD+YDVS +DG NLPM+++P+ P  PD
Sbjct:   65 LPPGQSRSLYG------PTGWSGRFWGRSGCDF-DGRGKGTCATGDCGSGEVE--CRG-AGATPPATLAEFTLDGDGGKDFYDVSLVDGYNLPMLVQPSAPGCPD 159          
BLAST of mRNA_H-elongata_contig17821.4697.1 vs. uniprot
Match: A0A139A649_GONPJ (Osmotin, thaumatin-like protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139A649_GONPJ)

HSP 1 Score: 75.1 bits (183), Expect = 2.820e-12
Identity = 52/157 (33.12%), Postives = 80/157 (50.96%), Query Frame = 1
Query:   61 PAGVYNSGPNGIGCYWDLPSEDSGNTDRLLGPGES--FLYNLHETSDDVRWSGTIWASTGCDWIDGCATGVCYSPDTDYVCPAYVGPSGPTTKAEFTLSDSGKDYYDVSAIDGTNLPMMIEPNNPIYPDDTTTNIFKYECGSPGSPNSPTDLGDCDW 525
            P G  N+  N I C+   P  D+G+T   + PG S    Y  +  + D+ +SG + A TG +   G A  V                +GP T+AEFTL++ G D+YDVS IDG N+P++++P++ +     T+N+  Y CG+PG   +    G   W
Sbjct:  297 PGGTCNTA-NKI-CFAKKPIPDTGST---IAPGASTTITYPNYGGNGDIVYSGNVLACTGPECKSG-ANSV----------------TGPATRAEFTLTNKGIDFYDVSIIDGLNMPVVMKPSSSLP---ATSNLGPYWCGNPGDTAAVNGAGASSW 428          
BLAST of mRNA_H-elongata_contig17821.4697.1 vs. uniprot
Match: A0A453RQX7_AEGTS (Uncharacterized protein n=6 Tax=Triticeae TaxID=147389 RepID=A0A453RQX7_AEGTS)

HSP 1 Score: 73.6 bits (179), Expect = 2.880e-12
Identity = 40/83 (48.19%), Postives = 52/83 (62.65%), Query Frame = 1
Query:  205 WSGTIWASTGCDWIDG---CATGVCYSPDTDYVCPAYVGPSGPTTKAEFTLS-DSGKDYYDVSAIDGTNLPMMIEPNNPIYPD 441
            WSG  WA +GC++  G   C TG C S + +  C    G + P T AEFTL  D GKD+YDVS +DG NLPM+++P+ P  PD
Sbjct:   22 WSGRFWARSGCNFNGGKGTCVTGDCGSGEIE--CRG-AGATPPATLAEFTLDGDGGKDFYDVSLVDGYNLPMLVQPSAPGCPD 101          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17821.4697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2P7_9PHAE6.230e-10470.73WSC domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7FRB8_ECTSI6.460e-2539.88Thaumatin-domain containing protein n=2 Tax=Ectoca... [more]
A0A378LTF9_9GAMM1.220e-1432.14Thaumatin domain-containing protein n=1 Tax=Legion... [more]
A0A453RQP2_AEGTS1.270e-1243.14Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A804QIP2_MAIZE2.270e-1246.08Uncharacterized protein n=1 Tax=Zea mays TaxID=457... [more]
A0A3B6TQU4_WHEAT2.600e-1243.14Uncharacterized protein n=8 Tax=Triticeae TaxID=14... [more]
B5LW99_9PHYC2.670e-1231.48Putative thaumatin/PR5-like protein n=1 Tax=Feldma... [more]
UPI001F5C8AB72.690e-1245.71thaumatin-like protein 1 n=1 Tax=Lolium rigidum Ta... [more]
A0A139A649_GONPJ2.820e-1233.12Osmotin, thaumatin-like protein n=1 Tax=Gonapodya ... [more]
A0A453RQX7_AEGTS2.880e-1248.19Uncharacterized protein n=6 Tax=Triticeae TaxID=14... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17821contigH-elongata_contig17821:2..1037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score73.2
Seed ortholog evalue1.6e-10
Seed eggNOG ortholog297246.lpp1283
EggNOG free text desc.Thaumatin family
EggNOG OGs1JGPB@118969,1P3U7@1224,1SSQM@1236,2DX7U@1,343S2@2
COG Functional cat.S
Best tax levelLegionellales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWSC and thaumatin domain protein
Ec32 orthologEc-01_005860.1
Exons2
Model size606
Cds size606
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930029.5403006-CDS-H-elongata_contig17821:1..1421622930029.5403006-CDS-H-elongata_contig17821:1..142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17821 2..142 -
1691679253.0226536-CDS-H-elongata_contig17821:1..1421691679253.0226536-CDS-H-elongata_contig17821:1..142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17821 2..142 -
1622930029.5542145-CDS-H-elongata_contig17821:572..10371622930029.5542145-CDS-H-elongata_contig17821:572..1037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17821 573..1037 -
1691679253.0382469-CDS-H-elongata_contig17821:572..10371691679253.0382469-CDS-H-elongata_contig17821:572..1037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17821 573..1037 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17821.4697.1prot_H-elongata_contig17821.4697.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17821 2..1037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17821.4697.1

>prot_H-elongata_contig17821.4697.1 ID=prot_H-elongata_contig17821.4697.1|Name=mRNA_H-elongata_contig17821.4697.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=202bp
RITFGTGTDETSEDLCDAFGPAGVYNSGPNGIGCYWDLPSEDSGNTDRLL
GPGESFLYNLHETSDDVRWSGTIWASTGCDWIDGCATGVCYSPDTDYVCP
AYVGPSGPTTKAEFTLSDSGKDYYDVSAIDGTNLPMMIEPNNPIYPDDTT
TNIFKYECGSPGSPNSPTDLGDCDWSYEDYVGDVDESLSQYLRLVFPEDY
EN
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mRNA from alignment at H-elongata_contig17821:2..1037-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17821.4697.1 ID=mRNA_H-elongata_contig17821.4697.1|Name=mRNA_H-elongata_contig17821.4697.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1036bp|location=Sequence derived from alignment at H-elongata_contig17821:2..1037- (Himanthalia elongata Himel1 dioecious)
AGGATTACGTTTGGCACCGGAACAGATGAAACTAGCGAGGACCTCTGCGA CGCATTCGGCCCCGCTGGGGTGTACAATTCGGGGCCGAACGGCATCGGCT GCTACTGGGACCTGCCCTCGGAGGATAGCGGCAACACGGACCGTCTTCTC GGCCCGGGAGAGTCGTTCCTTTACAACCTGCACGAGACCAGCGACGACGT GCGATGGAGCGGCACTATCTGGGCGAGCACCGGCTGCGACTGGATCGATG GGTGCGCAACGGGAGTCTGCTACAGCCCGGACACTGACTACGTGTGCCCG GCGTACGTTGGTCCTAGTGGACCGACCACCAAGGCCGAGTTCACTCTCAG CGACAGTGGCAAGGATTATTACGACGTGAGCGCGATCGACGGCACGAACC TGCCCATGATGATCGAGCCCAACAACCCTATCTACCCCGATGACACCACC ACTAATATATTCAAGGTGAGTGAGTATGTCTGTGCAGAGCGGGCGGCGGG AGTGAGAGTGATGTGTAGGGGCTTTGATAAGGCGGGGGGGGGGAGGGGGG GTAGAGATTCACGCAAGACCTGACAACGAAAGTGGTTTACCTTCACCAAG CATTGTCCGACGCGAGTGCCGGTTACAAGCTGCTGGTATGATCGCCGTGC GATTAGCGGATTTTGTCGTTTTTGACACAAGTTACAGGTGGAAATAGTTT GGCCTCGAGAAGTGAAATAGAAGCAAGATGCTTTGCTTCATCCCTTGGTG GCGAAAGCGCACTGTTACACGTGGACTATGACGATCCAAGCTTTGCTTGC TCACCCACTGGCTGCCGTAGACTATCCCCTAGACTCTTCGCGCACGGTAC ACATGGAGTTCCCCCCCCCCCCTGTCTCCTCATCTTCGCGAACAGTACGA ATGTGGATCGCCAGGCTCCCCGAACTCACCCACCGACCTCGGTGACTGCG ACTGGTCTTACGAAGACTACGTGGGGGACGTCGACGAAAGTCTCAGCCAG TATCTCCGTCTTGTTTTTCCTGAAGACTACGAGAAC
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Coding sequence (CDS) from alignment at H-elongata_contig17821:2..1037-

>mRNA_H-elongata_contig17821.4697.1 ID=mRNA_H-elongata_contig17821.4697.1|Name=mRNA_H-elongata_contig17821.4697.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1212bp|location=Sequence derived from alignment at H-elongata_contig17821:2..1037- (Himanthalia elongata Himel1 dioecious)
AGGATTACGTTTGGCACCGGAACAGATGAAACTAGCGAGGACCTCTGCGA
CGCATTCGGCCCCGCTGGGGTGTACAATTCGGGGCCGAACGGCATCGGCT
GCTACTGGGACCTGCCCTCGGAGGATAGCGGCAACACGGACCGTCTTCTC
GGCCCGGGAGAGTCGTTCCTTTACAACCTGCACGAGACCAGCGACGACGT
GCGATGGAGCGGCACTATCTGGGCGAGCACCGGCTGCGACTGGATCGATG
GGTGCGCAACGGGAGTCTGCTACAGCCCGGACACTGACTACGTGTGCCCG
GCGTACGTTGGTCCTAGTGGACCGACCACCAAGGCCGAGTTCACTCTCAG
CGACAGTGGCAAGGATTATTACGACGTGAGCGCGATCGACGGCACGAACC
TGCCCATGATGATCGAGCCCAACAACCCTATCTACCCCGATGACACCACC
ACTAATATATTCAAGAGGATTACGTTTGGCACCGGAACAGATGAAACTAG
CGAGGACCTCTGCGACGCATTCGGCCCCGCTGGGGTGTACAATTCGGGGC
CGAACGGCATCGGCTGCTACTGGGACCTGCCCTCGGAGGATAGCGGCAAC
ACGGACCGTCTTCTCGGCCCGGGAGAGTCGTTCCTTTACAACCTGCACGA
GACCAGCGACGACGTGCGATGGAGCGGCACTATCTGGGCGAGCACCGGCT
GCGACTGGATCGATGGGTGCGCAACGGGAGTCTGCTACAGCCCGGACACT
GACTACGTGTGCCCGGCGTACGTTGGTCCTAGTGGACCGACCACCAAGGC
CGAGTTCACTCTCAGCGACAGTGGCAAGGATTATTACGACGTGAGCGCGA
TCGACGGCACGAACCTGCCCATGATGATCGAGCCCAACAACCCTATCTAC
CCCGATGACACCACCACTAATATATTCAAGTACGAATGTGGATCGCCAGG
CTCCCCGAACTCACCCACCGACCTCGGTGACTGCGACTGGTCTTACGAAG
ACTACGTGGGGGACGTCGACGAAAGTCTCAGCCAGTATCTCCGTCTTGTT
TTTCCTGAAGACTACGAGAACTACGAATGTGGATCGCCAGGCTCCCCGAA
CTCACCCACCGACCTCGGTGACTGCGACTGGTCTTACGAAGACTACGTGG
GGGACGTCGACGAAAGTCTCAGCCAGTATCTCCGTCTTGTTTTTCCTGAA
GACTACGAGAAC
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