mRNA_H-elongata_contig1774.4663.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1774.4663.1
Unique NamemRNA_H-elongata_contig1774.4663.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1774.4663.1 vs. uniprot
Match: D7FN07_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN07_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 6.770e-26
Identity = 57/87 (65.52%), Postives = 64/87 (73.56%), Query Frame = 1
Query:    1 IGTSSSQWRK--NYNDEPDQSRGIHVHDNIITTNGNEGINVKEGCVATLIENNEIYMQKDEHSGGIDSRADGSIIRNNYIQDADGAG 255
            IGTSS+QW    N++D PD  +GI VHDN I T GNEGI VKEG V TLIE NE+YMQ D  SGGI SR D SIIR N+I+D DGAG
Sbjct:   31 IGTSSTQWDDGDNWSDGPDVCQGITVHDNFIRTKGNEGIEVKEGTVETLIEGNEVYMQYDAESGGIGSRGDRSIIRYNHIEDTDGAG 117          
BLAST of mRNA_H-elongata_contig1774.4663.1 vs. uniprot
Match: D7G5Z6_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Z6_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.140e-25
Identity = 56/87 (64.37%), Postives = 63/87 (72.41%), Query Frame = 1
Query:    1 IGTSSSQWRK--NYNDEPDQSRGIHVHDNIITTNGNEGINVKEGCVATLIENNEIYMQKDEHSGGIDSRADGSIIRNNYIQDADGAG 255
            IGTSS+QW    N++D PD  +GI V DN I T GNEGI VKEG V TLIE NE+YMQ D  SGGI SR D SIIR N+I+D DGAG
Sbjct:    9 IGTSSTQWDDGDNWSDGPDVCQGITVRDNFIRTKGNEGIEVKEGTVETLIEGNEVYMQYDAESGGIGSRGDRSIIRYNHIEDTDGAG 95          
BLAST of mRNA_H-elongata_contig1774.4663.1 vs. uniprot
Match: D7FN04_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN04_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 6.620e-25
Identity = 56/87 (64.37%), Postives = 63/87 (72.41%), Query Frame = 1
Query:    1 IGTSSSQWRK--NYNDEPDQSRGIHVHDNIITTNGNEGINVKEGCVATLIENNEIYMQKDEHSGGIDSRADGSIIRNNYIQDADGAG 255
            IGTSS+QW    N++D PD  +GI V DN I T GNEGI VKEG V TLIE NE+YMQ D  SGGI SR D SIIR N+I+D DGAG
Sbjct:    9 IGTSSTQWDDGDNWSDGPDVCQGITVRDNFIRTKGNEGIEVKEGTVETLIEGNEVYMQYDAESGGIGSRGDRSIIRYNHIEDTDGAG 95          
BLAST of mRNA_H-elongata_contig1774.4663.1 vs. uniprot
Match: D7FIS5_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS5_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 4.470e-24
Identity = 55/87 (63.22%), Postives = 63/87 (72.41%), Query Frame = 1
Query:    1 IGTSSSQWRK--NYNDEPDQSRGIHVHDNIITTNGNEGINVKEGCVATLIENNEIYMQKDEHSGGIDSRADGSIIRNNYIQDADGAG 255
            +GTSSSQW    N++D PD   G  + DN I T GNEGI+VKEG V TLIE NE+YMQ D+ SGGI SR D SIIR NYI+D DGAG
Sbjct:   33 VGTSSSQWDNDNNWDDVPDVCMGNIIRDNYIRTRGNEGIDVKEGTVDTLIEYNEVYMQYDDDSGGIGSRGDRSIIRYNYIEDTDGAG 119          
BLAST of mRNA_H-elongata_contig1774.4663.1 vs. uniprot
Match: A0A6H5JYT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.660e-23
Identity = 54/87 (62.07%), Postives = 63/87 (72.41%), Query Frame = 1
Query:    1 IGTSSSQWRK--NYNDEPDQSRGIHVHDNIITTNGNEGINVKEGCVATLIENNEIYMQKDEHSGGIDSRADGSIIRNNYIQDADGAG 255
            +GTSSSQW    N++D PD   G  + DN I T GNEGI+VKEG V TLIE NE+YMQ D+ SGGI SR D SIIR N+I+D DGAG
Sbjct:  215 VGTSSSQWDNDNNWDDVPDACMGNIIRDNYIRTRGNEGIDVKEGSVDTLIEYNEVYMQYDDDSGGIGSRGDRSIIRYNHIEDTDGAG 301          
BLAST of mRNA_H-elongata_contig1774.4663.1 vs. uniprot
Match: A0A6H5L8H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8H5_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 5.750e-23
Identity = 53/87 (60.92%), Postives = 63/87 (72.41%), Query Frame = 1
Query:    1 IGTSSSQWRK--NYNDEPDQSRGIHVHDNIITTNGNEGINVKEGCVATLIENNEIYMQKDEHSGGIDSRADGSIIRNNYIQDADGAG 255
            +GTSS+QW    N++D PD   G  + DN I T GNEGI+VKEG V TLIE NE+YMQ D+ SGGI SR D SIIR N+I+D DGAG
Sbjct:  216 VGTSSNQWDSDNNWDDVPDVCMGNIIRDNYIRTRGNEGIDVKEGSVDTLIEYNEVYMQYDDDSGGIGSRGDRSIIRYNHIEDTDGAG 302          
BLAST of mRNA_H-elongata_contig1774.4663.1 vs. uniprot
Match: A0A6H5L3G3_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3G3_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 7.890e-23
Identity = 53/87 (60.92%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    1 IGTSSSQWR--KNYNDEPDQSRGIHVHDNIITTNGNEGINVKEGCVATLIENNEIYMQKDEHSGGIDSRADGSIIRNNYIQDADGAG 255
            +GTSS QW   KN++D PD   G  +  N I T GNEGI+VKEG V TLIE NE+YMQ D+ SGGI SR D SIIR N+I+D DGAG
Sbjct:  210 VGTSSKQWDSDKNWDDVPDVCMGNIIRGNYIRTRGNEGIDVKEGTVDTLIEYNEVYMQYDDDSGGIGSRGDRSIIRYNHIEDTDGAG 296          
BLAST of mRNA_H-elongata_contig1774.4663.1 vs. uniprot
Match: D7FIS4_ECTSI (Putative nosD copper-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS4_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.460e-21
Identity = 52/85 (61.18%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 IGTSSSQWRKNYNDEPDQSRGIHVHDNIITTNGNEGINVKEGCVATLIENNEIYMQKDEHSGGIDSRADGSIIRNNYIQDADGAG 255
            +GTSS QW     D PD   G  + DN I T GNEGI+VKEG V TLIE NE++MQ D+ SGGI SR D SIIR N+IQD DGAG
Sbjct:  160 VGTSSDQWE----DGPDVCMGNIIRDNYIRTRGNEGIDVKEGSVDTLIELNEVHMQYDKESGGIGSRGDRSIIRYNHIQDTDGAG 240          
BLAST of mRNA_H-elongata_contig1774.4663.1 vs. uniprot
Match: A0A6H5K4I7_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I7_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 8.760e-16
Identity = 39/53 (73.58%), Postives = 42/53 (79.25%), Query Frame = 1
Query:   97 GNEGINVKEGCVATLIENNEIYMQKDEHSGGIDSRADGSIIRNNYIQDADGAG 255
            GNEGI VKEG V TLIE NE++MQ DE SGGI SR D SIIR N+IQD DGAG
Sbjct:   15 GNEGIEVKEGSVDTLIEYNEVHMQYDEESGGIGSRGDRSIIRYNHIQDTDGAG 67          
BLAST of mRNA_H-elongata_contig1774.4663.1 vs. uniprot
Match: A0A0G0AZ49_9BACT (Secreted protein n=1 Tax=Parcubacteria group bacterium GW2011_GWC2_32_10 TaxID=1618918 RepID=A0A0G0AZ49_9BACT)

HSP 1 Score: 77.8 bits (190), Expect = 7.350e-15
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    1 IGTSSSQWRKNYNDEPDQSRGIHVHDNIITTNGNEGINVKEGCVATLIENNEIYMQKDEHSGGIDSRADGSIIRNNYIQDADGAG 255
            IGT+  Q  KN   + D+S   ++H+N I TNGNEG+++KEG    ++E N I  QKD  SGG+DSR D +I R N + ++ GAG
Sbjct:  224 IGTAPEQLSKNPTLDIDKSNNNYIHNNSIQTNGNEGVDIKEGSTGNIVEYNIIRGQKDSESGGLDSRGDSNIFRYNDVAESLGAG 308          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1774.4663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN07_ECTSI6.770e-2665.52FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7G5Z6_ECTSI1.140e-2564.37FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FN04_ECTSI6.620e-2564.37FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FIS5_ECTSI4.470e-2463.22FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5JYT7_9PHAE1.660e-2362.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8H5_9PHAE5.750e-2360.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3G3_9PHAE7.890e-2360.92Beta_helix domain-containing protein n=1 Tax=Ectoc... [more]
D7FIS4_ECTSI1.460e-2161.18Putative nosD copper-binding protein n=1 Tax=Ectoc... [more]
A0A6H5K4I7_9PHAE8.760e-1673.58Beta_helix domain-containing protein n=1 Tax=Ectoc... [more]
A0A0G0AZ49_9BACT7.350e-1545.88Secreted protein n=1 Tax=Parcubacteria group bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1774contigH-elongata_contig1774:12428..13285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score73.2
Seed ortholog evalue6.7e-11
Seed eggNOG ortholog1121935.AQXX01000140_gene1045
EggNOG free text desc.Parallel beta-helix repeats
EggNOG OGs1NHJ7@1224,1SHNB@1236,COG3420@1,COG3420@2
COG Functional cat.P
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size257
Cds size255
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1774.4663.1prot_H-elongata_contig1774.4663.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1774 12428..13285 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930026.2440271-CDS-H-elongata_contig1774:12427..125231622930026.2440271-CDS-H-elongata_contig1774:12427..12523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1774 12428..12523 +
1691679251.6701565-CDS-H-elongata_contig1774:12427..125231691679251.6701565-CDS-H-elongata_contig1774:12427..12523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1774 12428..12523 +
1622930026.264397-CDS-H-elongata_contig1774:12834..129251622930026.264397-CDS-H-elongata_contig1774:12834..12925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1774 12835..12925 +
1691679251.687085-CDS-H-elongata_contig1774:12834..129251691679251.687085-CDS-H-elongata_contig1774:12834..12925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1774 12835..12925 +
1622930026.2799816-CDS-H-elongata_contig1774:13217..132851622930026.2799816-CDS-H-elongata_contig1774:13217..13285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1774 13218..13285 +
1691679251.7040908-CDS-H-elongata_contig1774:13217..132851691679251.7040908-CDS-H-elongata_contig1774:13217..13285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1774 13218..13285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1774.4663.1

>prot_H-elongata_contig1774.4663.1 ID=prot_H-elongata_contig1774.4663.1|Name=mRNA_H-elongata_contig1774.4663.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
IGTSSSQWRKNYNDEPDQSRGIHVHDNIITTNGNEGINVKEGCVATLIEN
NEIYMQKDEHSGGIDSRADGSIIRNNYIQDADGAG
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mRNA from alignment at H-elongata_contig1774:12428..13285+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1774.4663.1 ID=mRNA_H-elongata_contig1774.4663.1|Name=mRNA_H-elongata_contig1774.4663.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=858bp|location=Sequence derived from alignment at H-elongata_contig1774:12428..13285+ (Himanthalia elongata Himel1 dioecious)
ATCGGCACATCGAGCAGCCAGTGGAGAAAAAACTATAACGACGAGCCTGA CCAAAGCAGGGGAATTCACGTTCACGACAATATCATCACAACCAATGTAA GGCAGTCTTTGCCAGGCGTTGCTCGTCAGAAAAACGCCGCTGACCACAGT TTCTGGGATAATATCTGGAAATGTTTCACTCGGTTGGTAGAAGACCAGAA GCGAGTAATTCTTTTGGTGGGACGTTTTGACAGGCGATCCGATCCGCTGC TTGGTTATATTGATGGTTTTTCAGCAGGCTACTTGGTTAGAGCGAACGGT TAGATAATCGACCATTTCCTTGGCTCTTACCTTATCATAATCCGAGTAAC TCATCGTAATATACCATTAATTTTTGCTTTCCGTTGCTTATTTTGTAATG CATACAGGGGAACGAGGGCATAAACGTCAAAGAGGGCTGCGTCGCCACCC TAATCGAGAATAACGAGATATATATGCAGAAGGATGAACATTCTGGAGGT ACGATATTTTCATAAATCTGAACCGCCGTGTGCCCAAACCCCGAGTTTTA TTTATTTATTTATGTTCATATTTGTTTTCGTACCCGATAACATACGGAAT AAATAATCATTCGCGAAGTAAGGAGCTCTGTCTGGTAGATTACGGCATAC GCCACCTTACCCCCTTCCGAAGGATTTCCGAATGTGTTGTCCACGTTTTT TCTCGATTCAAGAGCGCTTGCGAAGCACGCGCGTTCATGTCCCTTTGTCT CAATCTATACTTCACTGCCGATGGTCCACCGTTCTGCCAGGCATTGACAG CCGCGCCGACGGGAGCATCATCCGAAACAATTATATCCAGGATGCCGATG GAGCGGGA
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Coding sequence (CDS) from alignment at H-elongata_contig1774:12428..13285+

>mRNA_H-elongata_contig1774.4663.1 ID=mRNA_H-elongata_contig1774.4663.1|Name=mRNA_H-elongata_contig1774.4663.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig1774:12428..13285+ (Himanthalia elongata Himel1 dioecious)
ATCGGCACATCGAGCAGCCAGTGGAGAAAAAACTATAACGACGAGCCTGA
CCAAAGCAGGGGAATTCACGTTCACGACAATATCATCACAACCAATATCG
GCACATCGAGCAGCCAGTGGAGAAAAAACTATAACGACGAGCCTGACCAA
AGCAGGGGAATTCACGTTCACGACAATATCATCACAACCAATGGGAACGA
GGGCATAAACGTCAAAGAGGGCTGCGTCGCCACCCTAATCGAGAATAACG
AGATATATATGCAGAAGGATGAACATTCTGGAGGGGAACGAGGGCATAAA
CGTCAAAGAGGGCTGCGTCGCCACCCTAATCGAGAATAACGAGATATATA
TGCAGAAGGATGAACATTCTGGAGGCATTGACAGCCGCGCCGACGGGAGC
ATCATCCGAAACAATTATATCCAGGATGCCGATGGAGCGGGAGCATTGAC
AGCCGCGCCGACGGGAGCATCATCCGAAACAATTATATCCAGGATGCCGA
TGGAGCGGGA
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