mRNA_H-elongata_contig17722.4651.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17722.4651.1
Unique NamemRNA_H-elongata_contig17722.4651.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17722.4651.1 vs. uniprot
Match: A0A6H5JW78_9PHAE (Lipoxygenase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW78_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.550e-18
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 3 
Query:    3 DYEMHHFGDKRVQGPLNTFRRHLEGIEDDIINESFQVVDAWRERGKNEKNAQNFAYYTLIPDCVPQSINI 212
            DY+ + F DKRVQ PL  F++ +E IE D+INE+  V  +WR+RGK +K A NF Y TL+PD VPQSINI
Sbjct:   97 DYDANQFSDKRVQAPLTKFQQAIEDIETDMINENAFVASSWRKRGKGKKAAANFGYTTLLPDKVPQSINI 166
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BLAST of mRNA_H-elongata_contig17722.4651.1 vs. uniprot
Match: A0A6H5KD72_9PHAE (Lipoxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD72_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 5.580e-17
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 3 
Query:    3 DYEMHHFGDKRVQGPLNTFRRHLEGIEDDIINESFQVVDAWRERGKNEKNAQNFAYYTLIPDCVPQSINI 212
            DY+ + F DKRVQ PL  F++ +E IE D++NE+  VV +WR+RGK +K A NF Y TL+PD VPQSINI
Sbjct:  535 DYDANQFSDKRVQAPLAKFQQAIEDIETDMVNENAFVVSSWRKRGKGKKAAANFGYTTLLPDKVPQSINI 604
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BLAST of mRNA_H-elongata_contig17722.4651.1 vs. uniprot
Match: D8LBX4_ECTSI (Lipoxygenase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX4_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.470e-14
Identity = 35/69 (50.72%), Postives = 49/69 (71.01%), Query Frame = 3 
Query:    6 YEMHHFGDKRVQGPLNTFRRHLEGIEDDIINESFQVVDAWRERGKNEKNAQNFAYYTLIPDCVPQSINI 212
            YE H+F D R+  PL  F++ +E IEDD++ ++  VV  WR+RGK ++ A N AY TL+PD +PQSINI
Sbjct:  584 YETHNFDDDRIAEPLAKFQQAIEDIEDDLVADNADVVSGWRQRGKAKRAANNMAYTTLLPDNIPQSINI 652
[Close]
BLAST of mRNA_H-elongata_contig17722.4651.1 vs. uniprot
Match: A0A6H5K920_9PHAE (Lipoxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K920_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.480e-14
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 3 
Query:    3 DYEMHHFGDKRVQGPLNTFRRHLEGIEDDIINESFQVVDAWRERGKNEKNAQNFAYYTLIPDCVPQSINI 212
            DYE + F D+RV  PL  F++ LE IE D+++E+  VV +WR+RGK ++ A NF Y TL+P+ VPQSINI
Sbjct:  607 DYEANQFSDQRVLAPLAKFQQALEDIETDMVDENAFVVSSWRKRGKEKRAAANFGYTTLLPEKVPQSINI 676
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17722.4651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JW78_9PHAE1.550e-1857.14Lipoxygenase domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KD72_9PHAE5.580e-1757.14Lipoxygenase domain-containing protein n=2 Tax=Ect... [more]
D8LBX4_ECTSI1.470e-1450.72Lipoxygenase n=2 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5K920_9PHAE1.480e-1452.86Lipoxygenase domain-containing protein n=2 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17722contigH-elongata_contig17722:3036..3977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue6.8e-14
Seed eggNOG ortholog2880.D7G113
KEGG rclassRC00561,RC00839,RC02139
KEGG koko:K00461
KEGG ReactionR01595,R03058,R08527
KEGG Pathwayko00590,ko01100,ko04664,ko04726,ko04913,ko05145,map00590,map01100,map04664,map04726,map04913,map05145
EggNOG free text desc.oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
EggNOG OGs28IFU@1,2QQSP@2759
EC1.13.11.34
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size505
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17722.4651.1prot_H-elongata_contig17722.4651.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17722 3047..3687 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930025.286206-UTR-H-elongata_contig17722:3035..30461622930025.286206-UTR-H-elongata_contig17722:3035..3046Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17722 3036..3046 +
1691679251.2782662-UTR-H-elongata_contig17722:3035..30461691679251.2782662-UTR-H-elongata_contig17722:3035..3046Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17722 3036..3046 +
1622930025.3344579-UTR-H-elongata_contig17722:3687..39771622930025.3344579-UTR-H-elongata_contig17722:3687..3977Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17722 3688..3977 +
1691679251.3110065-UTR-H-elongata_contig17722:3687..39771691679251.3110065-UTR-H-elongata_contig17722:3687..3977Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17722 3688..3977 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930025.2976146-CDS-H-elongata_contig17722:3046..31351622930025.2976146-CDS-H-elongata_contig17722:3046..3135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17722 3047..3135 +
1691679251.2887595-CDS-H-elongata_contig17722:3046..31351691679251.2887595-CDS-H-elongata_contig17722:3046..3135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17722 3047..3135 +
1622930025.3186953-CDS-H-elongata_contig17722:3572..36871622930025.3186953-CDS-H-elongata_contig17722:3572..3687Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17722 3573..3687 +
1691679251.2992954-CDS-H-elongata_contig17722:3572..36871691679251.2992954-CDS-H-elongata_contig17722:3572..3687Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17722 3573..3687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17722.4651.1

>prot_H-elongata_contig17722.4651.1 ID=prot_H-elongata_contig17722.4651.1|Name=mRNA_H-elongata_contig17722.4651.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
MHHFGDKRVQGPLNTFRRHLEGIEDDIINESFQVVDAWRERGKNEKNAQN
FAYYTLIPDCVPQSINI*
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mRNA from alignment at H-elongata_contig17722:3036..3977+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17722.4651.1 ID=mRNA_H-elongata_contig17722.4651.1|Name=mRNA_H-elongata_contig17722.4651.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=942bp|location=Sequence derived from alignment at H-elongata_contig17722:3036..3977+ (Himanthalia elongata Himel1 dioecious)
GAGACTACGAAATGCATCATTTCGGCGACAAGCGCGTGCAGGGGCCTCTT
AACACCTTCCGACGCCATTTGGAAGGTATCGAGGACGACATCATCAACGA
GTGAGTATCTTCGGTCGAGTCATACATTATGGAATTCTTTCCCTTAGATA
TATATATATATATTTGTGGAATAATGGGTGCAAAACCTCTGGGGAACGCA
TATATATGTCACTGTGTCCCGGTGGTTTAACTGGAAACCTGCCCGATCAG
TTGTACTGTACATCAGTCTTAAGTTCGAAACTCGCGGGGAAAAAAACGTG
GCAGAAGGCGTCTGCAAAAAAGTAAGGTTAAAAACCTATATAATATACCT
CCCCCCTCCTAAAAAAACAATGATTTTTCTGCTTTCTTGAATGTAGCGCA
GTATCATGTTTGAGCTAGATGTCATTTGCAGATGATTCTAAATTAGAGCC
CCGTTTCCTGCTTTGATTTTTTTACCATATATGTCGCATTTTCTGATCGG
CACGTGTCCTCGCTAATGCTTTAAACGTGATTGACAGGAGCTTCCAAGTT
GTCGATGCATGGCGCGAGAGGGGCAAGAACGAGAAGAATGCCCAAAATTT
TGCCTACTACACCCTGATTCCCGACTGTGTTCCCCAGTCCATCAATATCT
AGATTGCCGAGATATATTTTCCTTCACTACCTGAAACAAATGTCAAACGA
AGGCCCGGAAGGCACAAGAAGGGAGGATGTGTACCAATACCTGTCACGGT
AAAGTGTCAAACAGCATGTGGAGTGTTACGAAGCTTAATATGTCGTGTGC
ACGAGGAATACAGCTAGTAGTGGTCTATCTACTACCAGTCCTCAAAACTG
ATAGATTGTAAATACTCGTGGAAGAAATATGTAATGTGAGATGTAATTTA
GCAATCGATTTAGCGATCCTTGACGCGGAACTGACATAATCA
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Coding sequence (CDS) from alignment at H-elongata_contig17722:3036..3977+

>mRNA_H-elongata_contig17722.4651.1 ID=mRNA_H-elongata_contig17722.4651.1|Name=mRNA_H-elongata_contig17722.4651.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig17722:3036..3977+ (Himanthalia elongata Himel1 dioecious)
ATGCATCATTTCGGCGACAAGCGCGTGCAGGGGCCTCTTAACACCTTCCG
ACGCCATTTGGAAGGTATCGAGGACGACATCATCAACGAATGCATCATTT
CGGCGACAAGCGCGTGCAGGGGCCTCTTAACACCTTCCGACGCCATTTGG
AAGGTATCGAGGACGACATCATCAACGAGAGCTTCCAAGTTGTCGATGCA
TGGCGCGAGAGGGGCAAGAACGAGAAGAATGCCCAAAATTTTGCCTACTA
CACCCTGATTCCCGACTGTGTTCCCCAGTCCATCAATATCTAGGAGCTTC
CAAGTTGTCGATGCATGGCGCGAGAGGGGCAAGAACGAGAAGAATGCCCA
AAATTTTGCCTACTACACCCTGATTCCCGACTGTGTTCCCCAGTCCATCA
ATATCTAG
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