mRNA_H-elongata_contig17722.4650.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17722.4650.1 vs. uniprot
Match: D8LBX4_ECTSI (Lipoxygenase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX4_ECTSI) HSP 1 Score: 120 bits (301), Expect = 7.960e-30 Identity = 54/90 (60.00%), Postives = 72/90 (80.00%), Query Frame = 1
Query: 1 FHTSGDKKAFLAKVLASWIYTASTLHAAVNFPQQSLMSFTPNTPGAMYAPPPLDKNERTFEDYLACLPGMEIATTQAILGNTLGSVFHTR 270
++T+ DKKA +AKV+ASWIY+ASTLHAAVNFPQ+ MSF P+ PG++YAPPP+DK ERTF++++ LP MEIAT + LG +FHT+
Sbjct: 491 YYTTDDKKALIAKVIASWIYSASTLHAAVNFPQKPSMSFVPSCPGSVYAPPPIDKRERTFDEFMNYLPPMEIATIHVAMLTLLGDIFHTK 580
BLAST of mRNA_H-elongata_contig17722.4650.1 vs. uniprot
Match: A0A6H5KD72_9PHAE (Lipoxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD72_9PHAE) HSP 1 Score: 119 bits (298), Expect = 1.800e-29 Identity = 57/87 (65.52%), Postives = 69/87 (79.31%), Query Frame = 1
Query: 10 SGDKKAFLAKVLASWIYTASTLHAAVNFPQQSLMSFTPNTPGAMYAPPPLDKNERTFEDYLACLPGMEIATTQAILGNTLGSVFHTR 270
S D+K FLAKVLAS IY+AS LHAAVNFPQQ +MSF P+ P ++Y PPP DK ER+FE+YLA LP +EIA Q + GN LG+VFHT+
Sbjct: 446 STDQKVFLAKVLASLIYSASVLHAAVNFPQQPIMSFVPSNPPSIYVPPPTDKTERSFEEYLAYLPPLEIAAEQVVTGNILGTVFHTK 532
BLAST of mRNA_H-elongata_contig17722.4650.1 vs. uniprot
Match: A0A6H5K920_9PHAE (Lipoxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K920_9PHAE) HSP 1 Score: 114 bits (285), Expect = 1.250e-27 Identity = 58/86 (67.44%), Postives = 67/86 (77.91%), Query Frame = 1
Query: 10 SGDKKAFLAKVLASWIYTASTLHAAVNFPQQSLMSFTPNTPGAMYAPPPLDKNERTFEDYLACLPGMEIATTQAILGNTLGSVFHT 267
S DKK LAKVLAS IY+ASTLHAAVNFPQ++ MSF P+ P ++Y PP DK ERTFEDYLA LP +EIAT Q IL LG+VF+T
Sbjct: 518 STDKKGLLAKVLASLIYSASTLHAAVNFPQKTTMSFAPSNPASVYVTPPTDKTERTFEDYLAYLPPLEIATRQVILFTFLGNVFYT 603
BLAST of mRNA_H-elongata_contig17722.4650.1 vs. uniprot
Match: A0A6H5JW78_9PHAE (Lipoxygenase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW78_9PHAE) HSP 1 Score: 103 bits (258), Expect = 2.570e-26 Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = 1
Query: 37 KVLASWIYTASTLHAAVNFPQQSLMSFTPNTPGAMYAPPPLDKNERTFEDYLACLPGMEIATTQAILGNTLGSVFHTR 270
KVLAS IY+AS LHAAVNFPQQ +MSF P+ P ++Y PP DK +R+FE+YLA LP +EIA Q + GN LG+VFHT+
Sbjct: 17 KVLASLIYSASVLHAAVNFPQQPIMSFVPSNPPSIYVQPPTDKTKRSFEEYLAYLPPLEIAAEQVVTGNILGTVFHTK 94
BLAST of mRNA_H-elongata_contig17722.4650.1 vs. uniprot
Match: A0A6H5JK40_9PHAE (Lipoxygenase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK40_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 4.460e-21 Identity = 39/55 (70.91%), Postives = 50/55 (90.91%), Query Frame = 1
Query: 1 FHTSGDKKAFLAKVLASWIYTASTLHAAVNFPQQSLMSFTPNTPGAMYAPPPLDK 165
++T+ DKKAF+AKV+ASWIY+ASTLHAAVNFPQ+ MSF P+ PG++YAPPP+DK
Sbjct: 50 YYTTDDKKAFIAKVIASWIYSASTLHAAVNFPQKPSMSFVPSCPGSVYAPPPIDK 104
BLAST of mRNA_H-elongata_contig17722.4650.1 vs. uniprot
Match: A0A836C6W3_9STRA (Lipoxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6W3_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 8.030e-14 Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 1
Query: 31 LAKVLASWIYTASTLHAAVNFPQQSLMSFTPNTPGAMYAPPPLDKNERTFEDYLACLPGMEIATTQAILGNTLGSVFHTR 270
L K+LA+ I+T S HAAVNFPQ S+M+FTP P A++APPP D + +T ++L L M +A Q + LGSV+HTR
Sbjct: 559 LKKLLATIIFTGSAQHAAVNFPQPSIMAFTPAYPLALWAPPPDDPSPKTELEHLDMLAPMGVAKLQRSVALLLGSVYHTR 638
BLAST of mRNA_H-elongata_contig17722.4650.1 vs. uniprot
Match: A0A0N8KNK1_9CYAN (Lipoxygenase n=1 Tax=Phormidesmis priestleyi Ana TaxID=1666911 RepID=A0A0N8KNK1_9CYAN) HSP 1 Score: 68.9 bits (167), Expect = 1.180e-11 Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 1
Query: 28 FLAKVLASWIYTASTLHAAVNFPQQSLMSFTPNTPGAMYAPPPLDKNERTFEDYLACLPGMEIATTQAILGNTLGSVFHTR 270
+L L I+T+S HAAVNFPQ +LM+++PN P A Y P P + T +DYL LP ++ A Q + LGS+++TR
Sbjct: 595 YLTDALTLVIFTSSAQHAAVNFPQSALMTYSPNMPLAGYGPAPETATDATVQDYLNLLPPLDQAEVQMNMTYPLGSLYYTR 675
BLAST of mRNA_H-elongata_contig17722.4650.1 vs. uniprot
Match: A0A6H5JQS1_9PHAE (Lipoxygenase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQS1_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 2.890e-11 Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query: 31 LAKVLASWIYTASTLHAAVNFPQQSLMSFTPNTPGAMYAPPPLDKNERTF 180
+++ LAS IY+ASTLHAAVNFPQ + +SF P+ P ++Y PPP DK T+
Sbjct: 1 MSQALASLIYSASTLHAAVNFPQTTTISFAPSNPASVYVPPPTDKGVNTY 50
BLAST of mRNA_H-elongata_contig17722.4650.1 vs. uniprot
Match: A0A1Y5GPP4_9GAMM (Lipoxygenase domain-containing protein n=1 Tax=Gammaproteobacteria bacterium 45_16_T64 TaxID=1856297 RepID=A0A1Y5GPP4_9GAMM) HSP 1 Score: 67.0 bits (162), Expect = 5.580e-11 Identity = 36/81 (44.44%), Postives = 50/81 (61.73%), Query Frame = 1
Query: 28 FLAKVLASWIYTASTLHAAVNFPQQSLMSFTPNTPGAMYAPPPLDKNERTFEDYLACLPGMEIATTQAILGNTLGSVFHTR 270
+L VL ++TAS HAAVNFPQ ++MS+TP A YAP P ++ + +D LA LP +E + Q +L LG V+ TR
Sbjct: 544 YLTDVLTMAVFTASAQHAAVNFPQLTVMSYTPAMQMASYAPLPTSEHCSSSQDILATLPPLEQSLKQMLLTQLLGGVYFTR 624
BLAST of mRNA_H-elongata_contig17722.4650.1 vs. uniprot
Match: B1WT74_CROS5 (Probable lipoxygenase n=2 Tax=Crocosphaera TaxID=263510 RepID=B1WT74_CROS5) HSP 1 Score: 66.6 bits (161), Expect = 7.640e-11 Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = 1
Query: 16 DKKAFLAKVLASWIYTASTLHAAVNFPQQSLMSFTPNTPGAMYAPPPLDKNERTFEDYLACLPGMEIATTQAILGNTLGSVFHTR 270
+ K +L++VL++ I+TAS HAAVNFPQ++LM++ P P A Y+PPP E + +L LP + A +Q + LGSV++T+
Sbjct: 584 NTKDYLSQVLSTLIFTASAQHAAVNFPQKTLMTYVPGFPLARYSPPPTHVKET--QSFLDGLPSLSQAQSQINILYLLGSVYYTQ 666 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17722.4650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17722.4650.1 >prot_H-elongata_contig17722.4650.1 ID=prot_H-elongata_contig17722.4650.1|Name=mRNA_H-elongata_contig17722.4650.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp FHTSGDKKAFLAKVLASWIYTASTLHAAVNFPQQSLMSFTPNTPGAMYAPback to top mRNA from alignment at H-elongata_contig17722:2065..2745+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17722.4650.1 ID=mRNA_H-elongata_contig17722.4650.1|Name=mRNA_H-elongata_contig17722.4650.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=681bp|location=Sequence derived from alignment at H-elongata_contig17722:2065..2745+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17722:2065..2745+ >mRNA_H-elongata_contig17722.4650.1 ID=mRNA_H-elongata_contig17722.4650.1|Name=mRNA_H-elongata_contig17722.4650.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig17722:2065..2745+ (Himanthalia elongata Himel1 dioecious)back to top |