prot_H-elongata_contig17680.4635.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig17680.4635.1
Unique Nameprot_H-elongata_contig17680.4635.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length106
Homology
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BLAST of mRNA_H-elongata_contig17680.4635.1 vs. uniprot
Match: A0A7S2S457_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S457_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.380e-8
Identity = 40/98 (40.82%), Postives = 53/98 (54.08%), Query Frame = 0 
Query:    1 VRYRPEKDEFSGLSSAYTSFTYTAIDGVTGDQSAAAGIVKIYVLPMNDPPIPVNMSATVFAGKAYTLFLAGLEVDSSDGDYIVGAFLYELPAYGALYE 98
            +RYRP KD  SGL  A  +F+Y A+DGVTG +SA    V + V P NDPP   N+S   F+    T+     +VD S    I  A++  LP  G L +
Sbjct:   43 LRYRPPKDA-SGL--ALDTFSYYAMDGVTGVRSAQTRTVTLDVRPCNDPPRAFNVSLWAFSSTRTTVEFNTSDVDDSA---IAAAYITRLPRNGVLLQ 134
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17680.4635.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2S457_9STRA1.380e-840.82Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17680contigH-elongata_contig17680:4432..4749 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17680.4635.1mRNA_H-elongata_contig17680.4635.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig17680 4432..4749 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig17680.4635.1 ID=prot_H-elongata_contig17680.4635.1|Name=mRNA_H-elongata_contig17680.4635.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
VRYRPEKDEFSGLSSAYTSFTYTAIDGVTGDQSAAAGIVKIYVLPMNDPP
IPVNMSATVFAGKAYTLFLAGLEVDSSDGDYIVGAFLYELPAYGALYEVR
FISEI*
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