mRNA_H-elongata_contig176642.4626.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig176642.4626.1
Unique NamemRNA_H-elongata_contig176642.4626.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.720e-14
Identity = 53/163 (32.52%), Postives = 80/163 (49.08%), Query Frame = 1
Query:    1 DVGGPMKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYIT---PQTLLIKCVMIDKGSKFKEETQSELDRR-SIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLRE--KLWAHAMLFACDVTNKSAMTSKDRSKSPYELW 471
            D+ G  +  SLG   Y +I  DD TR+  V F K KSD        +A+      P  +++  V  D G +F E     + R+  I  E T +  P+YNGV E ALGL+++  +A   +   +         LWA A+ ++C+  N ++ TS    KSPYE+W
Sbjct:  739 DLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMW 899          
BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.730e-14
Identity = 53/163 (32.52%), Postives = 80/163 (49.08%), Query Frame = 1
Query:    1 DVGGPMKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYIT---PQTLLIKCVMIDKGSKFKEETQSELDRR-SIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLRE--KLWAHAMLFACDVTNKSAMTSKDRSKSPYELW 471
            D+ G  +  SLG   Y +I  DD TR+  V F K KSD        +A+      P  +++  V  D G +F E     + R+  I  E T +  P+YNGV E ALGL+++  +A   +   +         LWA A+ ++C+  N ++ TS    KSPYE+W
Sbjct:  574 DLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMW 734          
BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.730e-14
Identity = 53/163 (32.52%), Postives = 80/163 (49.08%), Query Frame = 1
Query:    1 DVGGPMKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYIT---PQTLLIKCVMIDKGSKFKEETQSELDRR-SIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLRE--KLWAHAMLFACDVTNKSAMTSKDRSKSPYELW 471
            D+ G  +  SLG   Y +I  DD TR+  V F K KSD        +A+      P  +++  V  D G +F E     + R+  I  E T +  P+YNGV E ALGL+++  +A   +   +         LWA A+ ++C+  N ++ TS    KSPYE+W
Sbjct:  587 DLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMW 747          
BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.740e-14
Identity = 53/163 (32.52%), Postives = 80/163 (49.08%), Query Frame = 1
Query:    1 DVGGPMKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYIT---PQTLLIKCVMIDKGSKFKEETQSELDRR-SIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLRE--KLWAHAMLFACDVTNKSAMTSKDRSKSPYELW 471
            D+ G  +  SLG   Y +I  DD TR+  V F K KSD        +A+      P  +++  V  D G +F E     + R+  I  E T +  P+YNGV E ALGL+++  +A   +   +         LWA A+ ++C+  N ++ TS    KSPYE+W
Sbjct:  730 DLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMW 890          
BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: UPI000D0898A5 (uncharacterized protein LOC112199671 n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI000D0898A5)

HSP 1 Score: 78.6 bits (192), Expect = 5.890e-14
Identity = 49/161 (30.43%), Postives = 81/161 (50.31%), Query Frame = 1
Query:    1 DVGGPMKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYITPQTLL---IKCVMIDKGSKFKEETQSEL-DRRSIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLREKLWAHAMLFACDVTNKSAMTSKDRSKSPYELW 471
            D+ GP++  S+G   Y+++ VDD TRF  V F ++KSD   +   L    +  ++ L   I  +  D G++F+  +     D   IMHE++    PQ NG+VE      + +++  M  +    + +    WA A+  AC  TN+  + S    K+PYELW
Sbjct:  735 DLVGPIQKESIGGKKYILVLVDDFTRFTWVNFLREKSDAFTSFKGLCKRILNEKSSLNTSIVRIRTDHGTEFQNSSFDNFCDEHGIMHEYSAPITPQQNGIVE-----RKNRVLIEMARVLLCGSGIAHIFWAEAVNTACYTTNRVFLRS-GTEKTPYELW 889          
BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.070e-13
Identity = 52/164 (31.71%), Postives = 79/164 (48.17%), Query Frame = 1
Query:    1 DVGGPMKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLI----ADYITPQTLLIKCVMIDKGSKFKEETQSELDRR-SIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLRE--KLWAHAMLFACDVTNKSAMTSKDRSKSPYELW 471
            ++ G  +  SLG   Y +I  DD TR+  V F K KSD        +    AD      ++++    D G +F E     + R+  I  E T +  P+YNGV E ALGL+++  IA   +   +         LWA A+ ++C+  N ++ TS    KSPYE+W
Sbjct:  372 ELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRS---DNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMW 532          
BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A699KEK6_TANCI (Integrase, catalytic region, zinc finger, CCHC-type, peptidase aspartic, catalytic (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699KEK6_TANCI)

HSP 1 Score: 77.4 bits (189), Expect = 1.340e-13
Identity = 50/160 (31.25%), Postives = 79/160 (49.38%), Query Frame = 1
Query:    1 DVGGPMKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYITPQTLLIKCVMIDKGSKFKEETQSEL-DRRSIMHEHTTSDMPQYNGVVE---CALGLLREKIIALMKELDNVINVLREKLWAHAMLFACDVTNKSAMTSKDRSKSPYEL 468
            D+ GPM+  ++    Y+++ VDD +RF  VKF + K +T   ++  I          ++ V  + G++F   T +E  +R SI H+ T    PQ NGVVE   C L  +   ++   K L          LWA A+  AC   N+S + ++   K+PYEL
Sbjct:  394 DLCGPMRVQTINGKKYILVIVDDYSRFTWVKFLRSKDETPDVVIKFITQIQVGLNKTVRYVRTNNGTEFVNHTMTEYYERISIFHQKTVPITPQQNGVVERQNCTLVKVARTMLIFSKALMF--------LWAEAVATACYTQNRSLIHTRHH-KTPYEL 544          
BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A6L2JAN5_TANCI (Integrase catalytic domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2JAN5_TANCI)

HSP 1 Score: 75.9 bits (185), Expect = 5.280e-13
Identity = 48/157 (30.57%), Postives = 78/157 (49.68%), Query Frame = 1
Query:    1 DVGGPMKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYITPQTLLIKCVMIDKGSKFKEETQSEL-DRRSIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLREKLWAHAMLFACDVTNKSAMTSKDRSKSPYEL 468
            D+ GPM+  ++    Y+++ VDD +RF  VKF + K +T+  ++  I          ++ V  D G++F   T +E  +R  I H+ T    PQ NGVVE     L E    ++     + +     LWA A+  AC   N+S + ++   K+PYEL
Sbjct:  940 DLCGPMRVQTINGKKYILVIVDDYSRFTWVKFFRLKDETLDVVIKFITQIQVGLNKTVRYVRTDNGTEFVNHTMTEYYERIGIFHQKTMPRTPQRNGVVERQNRTLVEAARTML-----IFSKALMFLWAEAVATACYTQNRSLIHTRHH-KTPYEL 1090          
BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A6L2P4V0_TANCI (Gag-Pol polyprotein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2P4V0_TANCI)

HSP 1 Score: 75.5 bits (184), Expect = 6.860e-13
Identity = 45/157 (28.66%), Postives = 78/157 (49.68%), Query Frame = 1
Query:    1 DVGGPMKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYITPQTLLIKCVMIDKGSKFKEETQSEL-DRRSIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLREKLWAHAMLFACDVTNKSAMTSKDRSKSPYEL 468
            D+ GPM+  ++    Y+++ VDD +RF  VKF + K +T   ++ +I         +++ V  D G++F   T +E  +R  I H+ T    PQ NGVV+      R + +        + +     LWA A+  AC   N+S + ++   K+PYE+
Sbjct:  493 DLCGPMRVQTINGKKYILVIVDDYSRFTWVKFLRSKDETPEVVIKVITQIQVGLNKIVRYVRTDNGTEFVNHTMTEYYERIGIFHQKTVLRTPQQNGVVK-----RRNRTLVKAARTMLIFSKAPMFLWAEAVATACYTQNRSLIHTRHH-KTPYEM 643          
BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A6L2JAF3_TANCI (Integrase catalytic domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2JAF3_TANCI)

HSP 1 Score: 75.1 bits (183), Expect = 9.880e-13
Identity = 48/157 (30.57%), Postives = 76/157 (48.41%), Query Frame = 1
Query:    1 DVGGPMKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYITPQTLLIKCVMIDKGSKFKEETQSEL-DRRSIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLREKLWAHAMLFACDVTNKSAMTSKDRSKSPYEL 468
            D+ GPM+  S+    Y+++ VDD +RF  VKF + K +    ++  +        + ++C+  D G+KF  +T  E  +   I HE + +  PQ NGVVE     L E    ++      +      LWA AM  AC   N+S +  +   K+PYEL
Sbjct: 1480 DLCGPMRVESVNGKKYILVLVDDYSRFTWVKFLRSKDEAPDFIIKFLKMIQVRLKVTVRCIRTDNGTKFVNQTLREYYEEVGISHETSVARSPQQNGVVERRNRTLIEAAHTMLIYAQASLF-----LWAEAMATACYAQNRSIIRLR-HGKTPYEL 1630          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTI6_9PHAE1.720e-1432.52Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZQ8_9PHAE1.730e-1432.52Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.730e-1432.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.740e-1432.52Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
UPI000D0898A55.890e-1430.43uncharacterized protein LOC112199671 n=1 Tax=Rosa ... [more]
A0A6H5K1N9_9PHAE1.070e-1331.71Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A699KEK6_TANCI1.340e-1331.25Integrase, catalytic region, zinc finger, CCHC-typ... [more]
A0A6L2JAN5_TANCI5.280e-1330.57Integrase catalytic domain-containing protein n=1 ... [more]
A0A6L2P4V0_TANCI6.860e-1328.66Gag-Pol polyprotein n=1 Tax=Tanacetum cinerariifol... [more]
A0A6L2JAF3_TANCI9.880e-1330.57Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig176642contigH-elongata_contig176642:496..972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score79.0
Seed ortholog evalue2.2e-12
Seed eggNOG ortholog90675.XP_010418825.1
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGs37SNQ@33090,3GHRQ@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size477
Cds size462
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930022.3961082-UTR-H-elongata_contig176642:495..5101622930022.3961082-UTR-H-elongata_contig176642:495..510Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig176642 496..510 +
1691679249.8908603-UTR-H-elongata_contig176642:495..5101691679249.8908603-UTR-H-elongata_contig176642:495..510Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig176642 496..510 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930022.4117408-CDS-H-elongata_contig176642:510..9721622930022.4117408-CDS-H-elongata_contig176642:510..972Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176642 511..972 +
1691679249.9020689-CDS-H-elongata_contig176642:510..9721691679249.9020689-CDS-H-elongata_contig176642:510..972Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176642 511..972 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig176642.4626.1prot_H-elongata_contig176642.4626.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig176642 511..972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig176642.4626.1

>prot_H-elongata_contig176642.4626.1 ID=prot_H-elongata_contig176642.4626.1|Name=mRNA_H-elongata_contig176642.4626.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
MKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYITPQT
LLIKCVMIDKGSKFKEETQSELDRRSIMHEHTTSDMPQYNGVVECALGLL
REKIIALMKELDNVINVLREKLWAHAMLFACDVTNKSAMTSKDRSKSPYE
LWF*
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mRNA from alignment at H-elongata_contig176642:496..972+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig176642.4626.1 ID=mRNA_H-elongata_contig176642.4626.1|Name=mRNA_H-elongata_contig176642.4626.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=477bp|location=Sequence derived from alignment at H-elongata_contig176642:496..972+ (Himanthalia elongata Himel1 dioecious)
GACGTGGGCGGCCCGATGAAGCACTCGAGTCTCGGGAAACACAGCTACGT CGTCATTTTTGTGGACGACTGCACCCGTTTCAAGGTGGTAAAGTTCGCTA AAAAGAAGAGTGACACAATGGCCACGCTAGTGTCTTTGATTGCAGATTAT ATCACCCCGCAAACGCTGTTGATCAAGTGCGTAATGATAGATAAGGGTAG CAAGTTCAAGGAGGAAACTCAGAGCGAACTGGACCGGCGTAGCATCATGC ACGAGCATACCACGTCAGACATGCCGCAGTACAACGGGGTGGTCGAATGC GCGCTTGGACTTTTACGGGAAAAAATAATCGCCCTGATGAAGGAGTTAGA CAACGTCATCAACGTACTGCGAGAGAAACTGTGGGCTCATGCAATGCTTT TCGCGTGCGACGTCACCAACAAGTCAGCTATGACGTCAAAGGATAGGAGT AAGTCGCCGTACGAACTATGGTTCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig176642:496..972+

>mRNA_H-elongata_contig176642.4626.1 ID=mRNA_H-elongata_contig176642.4626.1|Name=mRNA_H-elongata_contig176642.4626.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig176642:496..972+ (Himanthalia elongata Himel1 dioecious)
ATGAAGCACTCGAGTCTCGGGAAACACAGCTACGTCGTCATTTTTGTGGA
CGACTGCACCCGTTTCAAGGTGGTAAAGTTCGCTAAAAAGAAGAGTGACA
CAATGGCCACGCTAGTGTCTTTGATTGCAGATTATATCACCCCGCAAACG
CTGTTGATCAAGTGCGTAATGATAGATAAGGGTAGCAAGTTCAAGGAGGA
AACTCAGAGCGAACTGGACCGGCGTAGCATCATGCACGAGCATACCACGT
CAGACATGCCGCAGTACAACGGGGTGGTCGAATGCGCGCTTGGACTTTTA
CGGGAAAAAATAATCGCCCTGATGAAGGAGTTAGACAACGTCATCAACGT
ACTGCGAGAGAAACTGTGGGCTCATGCAATGCTTTTCGCGTGCGACGTCA
CCAACAAGTCAGCTATGACGTCAAAGGATAGGAGTAAGTCGCCGTACGAA
CTATGGTTCTGAATGAAGCACTCGAGTCTCGGGAAACACAGCTACGTCGT
CATTTTTGTGGACGACTGCACCCGTTTCAAGGTGGTAAAGTTCGCTAAAA
AGAAGAGTGACACAATGGCCACGCTAGTGTCTTTGATTGCAGATTATATC
ACCCCGCAAACGCTGTTGATCAAGTGCGTAATGATAGATAAGGGTAGCAA
GTTCAAGGAGGAAACTCAGAGCGAACTGGACCGGCGTAGCATCATGCACG
AGCATACCACGTCAGACATGCCGCAGTACAACGGGGTGGTCGAATGCGCG
CTTGGACTTTTACGGGAAAAAATAATCGCCCTGATGAAGGAGTTAGACAA
CGTCATCAACGTACTGCGAGAGAAACTGTGGGCTCATGCAATGCTTTTCG
CGTGCGACGTCACCAACAAGTCAGCTATGACGTCAAAGGATAGGAGTAAG
TCGCCGTACGAACTATGGTTCTGA
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